Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

23766663 .. 23777949

Gene Structure 11287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30020.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGTCGAGGAGAGTAGCGGACGACGATGAGGAGGTGGATGAGGTTGGGGAGGAGGAGGAGTACGAGGTGCAGGATCTGAGGGACCAGATCAAGTCGTCTCGCGGAAGCAGATTCAATCTGATAACCAACGAGTTGGGACTGGATCAAGGATCGTCGACGGCGAATAGTCGGAGAAGGAGAATGAGGTACTACCTGAGCAAGGAGAGCGTCATCAATGGCGTCAGAGGCCTCTCCAAGGGAATCGGAGTTATTCATCCAGATAACAGGTGGTATCGGGCATGGACGAAAGTGATACTGGTATGGGCAATCTACTCGTCCTTCTTCACACCTTTCGAGTTCGGGTTCTTCAGGGGTCTGCAAGAGAAGCTCTTCATACTAGACATCGTAGGCCAGGTAGCTTTCCTCGTCGACATTATTCTGCAATTCTTCGTTGCCTACAGAGACAGTCAGACCTATCGAATGGTCTATAAGCGCACTCCCATTGCTCTCCGGTACTTGAAATCTGGTTTCATCCTTGACTTGCTTGGCTGCATGCCTTGGGATAATATCTACAAGGCTTGTGGAAGAAGAGAGGAAGTGAGGTACCTTCTATGGCTTAGGTTGTGTCGGGTGCGCAAAGTCACCAAGTTTTTCCAGGATCTAGAGAAGGATATTCGGATTAGTTACGAGTTTACCAGGATCGTAAAGCTTCTGGTTGTTGAACTCTATTGCACACATACAGCAGCTTGCATCTTTTACTATTTGGCCACCACCTTGCCTCCTGTAGAAGAGGGGTACACATGGATTGGAAGTCTGAAGTTGGGTGACTATAGTTATTCTAGCTTCAGAGAGATTGATCTATGGAAGCGCTACACAACATCGCTATATTTTGCCATTGTAACCATGGCTACTGTTGGATATGGAGATATACATGCAGTAAACATGAGGGAGATGATCTTCATTATGGTTTATGTCTCTTTTGACATGGTTCTTGGTGCGTATTTGATTGGTAACATGACAGCGTTAATAGTAAAAGGATCAAAGACAGAAAAGTTCAGGGACAAAATGACAGATCTTACCAAGTATATGAACAGAAATAGACTTGGTAGGGATATCCGTAATCAGATCAAAGGCCACTTGCGTTTGCAGTATGAGAGTAGCTACACAGAGGCTGCTGTTCTCCAGGAGATCCCTGCTTCAATTCGCGCTAAGATTTCACAAACCTTATATTTTCCATACATTGTAAGTGTTCCTCTCTTCAAGGGATGCTCGACGGAATTCATCAATCAGATAGTTATTAAGTTACACGAAGAATTTTTCCTCCCAGGAGAAGTGATCATGGAACCTGGAAATGTTGTAGATCAACTTTATTTTGTCTGTCATGGTATACTGGAGGAGGTCGGTTTAGGGGAAGATGGATCTGAAGAAACAGTTTCGCTTTTGCAACCTAGCAGCTCATTTGGGGAAGTCTCCATTCTTTGTAACATTCCACAACCTTATACAGTTAGGGTGTGTGAACTGTGTAGGCTTCTGCGACTTGATAAAGAATCATTTACAAGTATCCTTGACATATACTTTTACGACGGGCGTAAAATCTTGAACAACCTTCTGGAGGCCAAAGGACCTCATGTCAAGCAACTAGAGTCGGACATCAGTTTTCACATTGGAAAGCAAGAAGCTGAACTTTCTTTAAAGGTGAATAGTGCTGCGTATCATGGAGATCTGTATCAGCTAAAAGGTTTGATCCGAGCTGGGGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGCATCTTGCTGCACTACGAGGACATGAAGATATTACACTTTTCCTTATTCAGCAAGGAGTAGACATCAACATCAAAGACAATTTTGGGAATACACCCTTACTCGAAGCCATCAAGAATGCACATGATCGAGTTTCTTCTCTACTTATAAAAGAAGGGGCCTCCTTGAATATAGATAATGCTGGTAGTTTTTTATGTACAGCAATTGCAAAGGGGGATTCAGATTTCCTTAAAAAGTTATTGTCAAATGGCATTGATCCTAATTCCAAAGGTTATGATCAACGGACGCCACTTCATATAGCTGCCTCTGAGGGACTATATTTAATGGCGAAGTTGCTGTTAGAAGCTGGAGCAAGTGTTTTCTCGAAGGACAGGTGGGGAAACACCCCATTAGATGAAGGTCGGATGTGTGGAAACAAGAATTTGATCAAATTGCTGGAAGAAGCAAAGGCTGCTCAGTTGTCGGAATTTCCATACCGTGCTCAAGAAATTTTGCAGATAAAATGCATCCAAAGAAATGTACAGTGTTTCCGTTCCACCCCTGGGATAGCAAAGAACACAGAAGATCTGGAATTGTGTTATGGGTGCCTCCCACTATTGAAGAGCTTATCAACACGGCGTCTGAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

802

Amino Acids

91.47

Weight (kDa)

7.48

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	9 - 188	2.4e-21	Ion transport protein
Ion_trans_2	PF07885	128 - 184	2.7e-08	Ion channel
cNMP_binding	PF00027	278 - 363	7.6e-18	Cyclic nucleotide-binding domain
Ank_2	PF12796	409 - 497	2.9e-15	Ankyrin repeats (3 copies)
Ank_4	PF13637	409 - 455	6.9e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	421 - 472	5.1e-09	Ankyrin repeats (many copies)
Ank	PF00023	434 - 466	3e-08	Ankyrin repeat
Ank_2	PF12796	503 - 585	3.4e-10	Ankyrin repeats (3 copies)
Ank_5	PF13857	518 - 570	1.4e-08	Ankyrin repeats (many copies)
Ank	PF00023	532 - 562	3.5e-06	Ankyrin repeat
KHA	PF11834	609 - 678	1.2e-23	KHA, dimerisation domain of potassium ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1922
Acc16I	TGCGCA	1 cut(s)	614
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	2 cut(s)	582, 2358
AccI	GTMKAC	4 cut(s)	155, 408, 1366, 1836
AccII	CGCG	2 cut(s)	102, 1185
AciI	CCGC	2 cut(s)	17, 102
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	5 cut(s)	1256, 1292, 2194, 2240, 2262
AcuI	CTGAAG	4 cut(s)	331, 808, 815, 1422
AcyI	GRCGYC	3 cut(s)	219, 2060, 2392
AfaI	GTAC	7 cut(s)	62, 188, 494, 584, 776, 1972, 2295
AfeI	AGCGCT	1 cut(s)	848
AfiI	CCNNNNNNNGG	5 cut(s)	199, 235, 1591, 1732, 2316
AgsI	TTSAA	8 cut(s)	115, 499, 701, 1179, 1240, 1579, 1942, 2374
AhdI	GACNNNNNGTC	1 cut(s)	1607
AjnI	CCWGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
Alw21I	GWGCWC	1 cut(s)	2257
Alw26I	GTCTC	4 cut(s)	102, 435, 958, 1453
AlwNI	CAGNNNCTG	2 cut(s)	76, 1151
Aor51HI	AGCGCT	1 cut(s)	848
AoxI	GGCC	6 cut(s)	226, 388, 744, 1111, 1593, 1932
ApeKI	GCWGC	8 cut(s)	528, 722, 1151, 1431, 1685, 1784, 2075, 2225
ApoI	RAATTY	5 cut(s)	1256, 1292, 2194, 2240, 2262
Asp700I	GAANNNNTTC	1 cut(s)	368
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	4 cut(s)	474, 615, 849, 1187
AspS9I	GGNCC	3 cut(s)	82, 1601, 1932
AsuHPI	GGTGA	4 cut(s)	613, 815, 1687, 1761
AvaII	GGWCC	2 cut(s)	82, 1601
BalI	TGGCCA	1 cut(s)	746
BanI	GGYRCC	2 cut(s)	582, 2358
Bbv12I	GWGCWC	1 cut(s)	2257
BbvI	GCAGC	8 cut(s)	515, 734, 1138, 1443, 1672, 1771, 2062, 2212
BccI	CCATC	3 cut(s)	1388, 1754, 1892
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
BciVI	GTATCC	1 cut(s)	1550
BclI	TGATCA	3 cut(s)	1314, 2050, 2199
BcoDI	GTCTC	4 cut(s)	102, 435, 958, 1453
BfaI	CTAG	6 cut(s)	377, 641, 819, 1428, 1619, 2404
BfmI	CTRYAG	3 cut(s)	436, 762, 808
BfoI	RGCGCY	1 cut(s)	850
BfuI	GTATCC	1 cut(s)	1550
BglII	AGATCT	3 cut(s)	1051, 1699, 2338
BisI	GCNGC	8 cut(s)	529, 723, 1152, 1432, 1686, 1785, 2076, 2226
BlsI	GCNGC	8 cut(s)	530, 724, 1153, 1433, 1687, 1786, 2077, 2227
Bme1390I	CCNGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
Bme18I	GGWCC	2 cut(s)	82, 1601
BmeRI	GACNNNNNGTC	1 cut(s)	1607
BmgT120I	GGNCC	3 cut(s)	82, 1601, 1932
BmiI	GGNNCC	5 cut(s)	83, 584, 1323, 1933, 2360
BmrFI	CCNGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
BmsI	GCATC	4 cut(s)	738, 1235, 1786, 2289
BpmI	CTGGAG	4 cut(s)	1145, 1391, 1610, 2142
Bpu10I	CCTNAGC	2 cut(s)	194, 596
BpuEI	CTTGAG	1 cut(s)	2241
BsaBI	GATNNNNATC	1 cut(s)	1704
BsaHI	GRCGYC	3 cut(s)	219, 2060, 2392
BsaJI	CCNNGG	6 cut(s)	234, 536, 882, 1303, 2314, 2315
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 742, 772, 2115, 2145
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 235, 1591, 1732, 2316
Bse1I	ACTGG	3 cut(s)	144, 300, 1374
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	1704
BseBI	CCWGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
BseDI	CCNNGG	6 cut(s)	234, 536, 882, 1303, 2314, 2315
BseGI	GGATG	6 cut(s)	43, 253, 510, 1250, 2184, 2280
BseJI	GATNNNNATC	1 cut(s)	1704
BseLI	CCNNNNNNNGG	5 cut(s)	199, 235, 1591, 1732, 2316
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	5 cut(s)	68, 185, 2073, 2243, 2387
BseNI	ACTGG	3 cut(s)	144, 300, 1374
BseRI	GAGGAG	6 cut(s)	22, 44, 65, 68, 71, 1388
BseXI	GCAGC	8 cut(s)	515, 734, 1138, 1443, 1672, 1771, 2062, 2212
BseYI	CCCAGC	1 cut(s)	1730
BsgI	GTGCAG	2 cut(s)	89, 1770
Bsh1236I	CGCG	2 cut(s)	102, 1185
BshFI	GGCC	6 cut(s)	228, 390, 746, 1113, 1595, 1934
BshNI	GGYRCC	2 cut(s)	582, 2358
BsiHKAI	GWGCWC	1 cut(s)	2257
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	4 cut(s)	95, 150, 1052, 2100
BslI	CCNNNNNNNGG	5 cut(s)	199, 235, 1591, 1732, 2316
BsmAI	GTCTC	4 cut(s)	102, 435, 958, 1453
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	4 cut(s)	95, 150, 1052, 2100
BsmI	GAATGC	1 cut(s)	1897
BsnI	GGCC	6 cut(s)	228, 390, 746, 1113, 1595, 1934
Bsp1286I	GDGCHC	1 cut(s)	2257
Bsp1407I	TGTACA	2 cut(s)	1970, 2293
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	2 cut(s)	17, 102
BspANI	GGCC	6 cut(s)	228, 390, 746, 1113, 1595, 1934
BspCNI	CTCAG	5 cut(s)	69, 186, 2074, 2242, 2388
BspFNI	CGCG	2 cut(s)	102, 1185
BspLI	GGNNCC	5 cut(s)	83, 584, 1323, 1933, 2360
BspQI	GCTCTTC	2 cut(s)	374, 2369
BspT107I	GGYRCC	2 cut(s)	582, 2358
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	2 cut(s)	1970, 2293
BsrI	ACTGG	3 cut(s)	144, 300, 1374
BssECI	CCNNGG	6 cut(s)	234, 536, 882, 1303, 2314, 2315
BssNAI	GTATAC	1 cut(s)	1367
BssNI	GRCGYC	3 cut(s)	219, 2060, 2392
BssT1I	CCWWGG	3 cut(s)	234, 536, 882
Bst1107I	GTATAC	1 cut(s)	1367
Bst2UI	CCWGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
Bst4CI	ACNGT	7 cut(s)	446, 892, 1411, 1483, 1500, 2252, 2298
Bst6I	CTCTTC	5 cut(s)	374, 562, 762, 1241, 2369
BstACI	GRCGYC	3 cut(s)	219, 2060, 2392
BstAPI	GCANNNNNTGC	1 cut(s)	2225
BstAUI	TGTACA	2 cut(s)	1970, 2293
BstC8I	GCNNGC	2 cut(s)	533, 727
BstDEI	CTNAG	7 cut(s)	77, 194, 596, 1188, 2082, 2229, 2396
BstDSI	CCRYGG	1 cut(s)	882
BstEII	GGTNACC	1 cut(s)	1767
BstENI	CCTNNNNNAGG	3 cut(s)	197, 233, 1589
BstF5I	GGATG	6 cut(s)	43, 253, 510, 1250, 2184, 2280
BstFNI	CGCG	2 cut(s)	102, 1185
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	4 cut(s)	474, 615, 849, 1187
BstMAI	GTCTC	4 cut(s)	102, 435, 958, 1453
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 225, 364, 2225
BstNI	CCWGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
BstNSI	RCATGY	2 cut(s)	535, 914
BstPI	GGTNACC	1 cut(s)	1767
BstSCI	CCNGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
BstSFI	CTRYAG	3 cut(s)	436, 762, 808
BstUI	CGCG	2 cut(s)	102, 1185
BstV1I	GCAGC	8 cut(s)	515, 734, 1138, 1443, 1672, 1771, 2062, 2212
BstX2I	RGATCY	7 cut(s)	73, 637, 1051, 1167, 1397, 1699, 2338
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	7 cut(s)	73, 637, 1051, 1167, 1397, 1699, 2338
BstZ17I	GTATAC	1 cut(s)	1367
BsuI	GTATCC	1 cut(s)	1550
BsuRI	GGCC	6 cut(s)	228, 390, 746, 1113, 1595, 1934
BtgI	CCRYGG	1 cut(s)	882
BtgZI	GCGATG	1 cut(s)	843
BtsCI	GGATG	6 cut(s)	43, 253, 510, 1250, 2184, 2280
BtsIMutI	CAGTG	1 cut(s)	2303
Cac8I	GCNNGC	2 cut(s)	533, 727
CaiI	CAGNNNCTG	2 cut(s)	76, 1151
CfoI	GCGC	4 cut(s)	474, 615, 849, 1187
Cfr13I	GGNCC	3 cut(s)	82, 1601, 1932
CseI	GACGC	4 cut(s)	196, 208, 2068, 2381
Csp6I	GTAC	7 cut(s)	61, 187, 493, 583, 775, 1971, 2294
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	7 cut(s)	61, 187, 493, 583, 775, 1971, 2294
DdeI	CTNAG	7 cut(s)	77, 194, 596, 1188, 2082, 2229, 2396
DraI	TTTAAA	1 cut(s)	1671
DriI	GACNNNNNGTC	1 cut(s)	1607
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	5 cut(s)	374, 562, 762, 1241, 2369
Eam1105I	GACNNNNNGTC	1 cut(s)	1607
EarI	CTCTTC	5 cut(s)	374, 562, 762, 1241, 2369
Eco130I	CCWWGG	3 cut(s)	234, 536, 882
Eco147I	AGGCCT	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	1093
Eco47I	GGWCC	2 cut(s)	82, 1601
Eco47III	AGCGCT	1 cut(s)	848
Eco57I	CTGAAG	4 cut(s)	331, 808, 815, 1422
Eco91I	GGTNACC	1 cut(s)	1767
EcoNI	CCTNNNNNAGG	3 cut(s)	197, 233, 1589
EcoO109I	RGGNCCY	2 cut(s)	1601, 1932
EcoO65I	GGTNACC	1 cut(s)	1767
EcoRI	GAATTC	1 cut(s)	1256
EcoRII	CCWGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
EcoRV	GATATC	1 cut(s)	1093
EcoT14I	CCWWGG	3 cut(s)	234, 536, 882
EcoT22I	ATGCAT	1 cut(s)	2282
ErhI	CCWWGG	3 cut(s)	234, 536, 882
Esp3I	CGTCTC	1 cut(s)	102
FalI	AAGNNNNNCTT	2 cut(s)	1647, 1679
FaqI	GGGAC	4 cut(s)	95, 150, 1052, 2100
FbaI	TGATCA	3 cut(s)	1314, 2050, 2199
FblI	GTMKAC	4 cut(s)	155, 408, 1366, 1836
Fnu4HI	GCNGC	8 cut(s)	529, 723, 1152, 1432, 1686, 1785, 2076, 2226
FokI	GGATG	6 cut(s)	50, 240, 497, 1257, 2191, 2267
Fsp4HI	GCNGC	8 cut(s)	529, 723, 1152, 1432, 1686, 1785, 2076, 2226
FspBI	CTAG	6 cut(s)	377, 641, 819, 1428, 1619, 2404
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	4 cut(s)	473, 614, 848, 1186
GluI	GCNGC	8 cut(s)	529, 723, 1152, 1432, 1686, 1785, 2076, 2226
GsaI	CCCAGC	1 cut(s)	1734
GsuI	CTGGAG	4 cut(s)	1145, 1391, 1610, 2142
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	6 cut(s)	228, 390, 746, 1113, 1595, 1934
HapII	CCGG	1 cut(s)	490
HgaI	GACGC	4 cut(s)	196, 208, 2068, 2381
HhaI	GCGC	4 cut(s)	474, 615, 849, 1187
Hin1I	GRCGYC	3 cut(s)	219, 2060, 2392
Hin6I	GCGC	4 cut(s)	472, 613, 847, 1185
HinP1I	GCGC	4 cut(s)	472, 613, 847, 1185
HincII	GTYRAC	2 cut(s)	156, 409
HindII	GTYRAC	2 cut(s)	156, 409
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	111, 240, 1526, 1622, 1991
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	4 cut(s)	613, 815, 1687, 1761
Hpy166II	GTNNAC	8 cut(s)	156, 409, 672, 777, 919, 1367, 1496, 1837
Hpy188III	TCNNGA	8 cut(s)	257, 641, 1576, 1589, 1888, 2137, 2258, 2342
Hpy8I	GTNNAC	8 cut(s)	156, 409, 672, 777, 919, 1367, 1496, 1837
Hpy99I	CGWCG	6 cut(s)	26, 157, 160, 410, 1255, 1565
HpyAV	CCTTC	9 cut(s)	168, 328, 596, 640, 1595, 1758, 1922, 2134, 2165
HpyCH4III	ACNGT	7 cut(s)	446, 892, 1411, 1483, 1500, 2252, 2298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 225, 364, 2225
HpyF3I	CTNAG	7 cut(s)	77, 194, 596, 1188, 2082, 2229, 2396
Hsp92I	GRCGYC	3 cut(s)	219, 2060, 2392
HspAI	GCGC	4 cut(s)	472, 613, 847, 1185
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	3 cut(s)	1314, 2050, 2199
LguI	GCTCTTC	2 cut(s)	374, 2369
LmnI	GCTCC	1 cut(s)	2123
Lsp1109I	GCAGC	8 cut(s)	515, 734, 1138, 1443, 1672, 1771, 2062, 2212
LweI	GCATC	4 cut(s)	738, 1235, 1786, 2289
MaeI	CTAG	6 cut(s)	377, 641, 819, 1428, 1619, 2404
MaeIII	GTNAC	8 cut(s)	619, 662, 803, 877, 989, 1281, 1460, 1767
MfeI	CAATTG	1 cut(s)	1977
MflI	RGATCY	7 cut(s)	73, 637, 1051, 1167, 1397, 1699, 2338
MhlI	GDGCHC	1 cut(s)	2257
MlsI	TGGCCA	1 cut(s)	746
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	1 cut(s)	1631
MmeI	TCCRAC	5 cut(s)	149, 874, 1605, 2156, 2217
Mox20I	TGGCCA	1 cut(s)	746
Mph1103I	ATGCAT	1 cut(s)	2282
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	5 cut(s)	1004, 1278, 1670, 2004, 2096
Msp20I	TGGCCA	1 cut(s)	746
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
MunI	CAATTG	1 cut(s)	1977
Mva1269I	GAATGC	1 cut(s)	1897
MvaI	CCWGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
MvnI	CGCG	2 cut(s)	102, 1185
MwoI	GCNNNNNNNGC	4 cut(s)	204, 225, 364, 2225
NcoI	CCATGG	1 cut(s)	882
NlaIV	GGNNCC	5 cut(s)	83, 584, 1323, 1933, 2360
NmuCI	GTSAC	3 cut(s)	619, 803, 1767
NsbI	TGCGCA	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	2282
NspI	RCATGY	2 cut(s)	535, 914
PaeI	GCATGC	1 cut(s)	535
PasI	CCCWGGG	1 cut(s)	2315
PceI	AGGCCT	1 cut(s)	228
PciSI	GCTCTTC	2 cut(s)	374, 2369
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	1897
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	111, 240, 1526, 1991
PfoI	TCCNGGA	2 cut(s)	633, 1161
PkrI	GCNGC	8 cut(s)	530, 724, 1153, 1433, 1687, 1786, 2077, 2227
PleI	GAGTC	1 cut(s)	1630
PpsI	GAGTC	1 cut(s)	1630
PpuMI	RGGWCCY	1 cut(s)	1601
PsiI	TTATAA	1 cut(s)	1922
Psp5II	RGGWCCY	1 cut(s)	1601
Psp6I	CCWGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
PspEI	GGTNACC	1 cut(s)	1767
PspFI	CCCAGC	1 cut(s)	1730
PspGI	CCWGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
PspN4I	GGNNCC	5 cut(s)	83, 584, 1323, 1933, 2360
PspPI	GGNCC	3 cut(s)	82, 1601, 1932
PspPPI	RGGWCCY	1 cut(s)	1601
PstNI	CAGNNNCTG	2 cut(s)	76, 1151
PsuI	RGATCY	7 cut(s)	73, 637, 1051, 1167, 1397, 1699, 2338
RsaI	GTAC	7 cut(s)	62, 188, 494, 584, 776, 1972, 2295
RsaNI	GTAC	7 cut(s)	61, 187, 493, 583, 775, 1971, 2294
SalI	GTCGAC	2 cut(s)	154, 407
SapI	GCTCTTC	2 cut(s)	374, 2369
SaqAI	TTAA	5 cut(s)	1004, 1278, 1670, 2004, 2096
SatI	GCNGC	8 cut(s)	529, 723, 1152, 1432, 1686, 1785, 2076, 2226
Sau96I	GGNCC	3 cut(s)	82, 1601, 1932
SchI	GAGTC	1 cut(s)	1631
ScrFI	CCNGG	7 cut(s)	392, 635, 676, 1163, 1305, 1326, 2316
SduI	GDGCHC	1 cut(s)	2257
SfaNI	GCATC	4 cut(s)	738, 1235, 1786, 2289
SfcI	CTRYAG	3 cut(s)	436, 762, 808
SgrDI	CGTCGACG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	82, 1601
SmlI	CTYRAG	1 cut(s)	2256
SmoI	CTYRAG	1 cut(s)	2256
SphI	GCATGC	1 cut(s)	535
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	17, 102
SspMI	CTAG	6 cut(s)	377, 641, 819, 1428, 1619, 2404
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	7 cut(s)	390, 633, 674, 1161, 1303, 1324, 2314
StyI	CCWWGG	3 cut(s)	234, 536, 882
TaaI	ACNGT	7 cut(s)	446, 892, 1411, 1483, 1500, 2252, 2298
TaqI	TCGA	9 cut(s)	5, 155, 333, 408, 457, 1250, 1878, 1903, 2138
TatI	WGTACW	2 cut(s)	1970, 2293
TfiI	GAWTC	4 cut(s)	111, 240, 1526, 1991
Tru1I	TTAA	5 cut(s)	1004, 1278, 1670, 2004, 2096
Tru9I	TTAA	5 cut(s)	1004, 1278, 1670, 2004, 2096
TscAI	CASTG	1 cut(s)	2303
TseFI	GTSAC	3 cut(s)	619, 803, 1767
TseI	GCWGC	8 cut(s)	528, 722, 1151, 1431, 1685, 1784, 2075, 2225
Tsp45I	GTSAC	3 cut(s)	619, 803, 1767
TspDTI	ATGAA	9 cut(s)	242, 361, 499, 928, 1082, 1249, 1815, 2057, 2184
TspGWI	ACGGA	4 cut(s)	1085, 1268, 2071, 2294
TspRI	CASTG	1 cut(s)	2303
VpaK11BI	GGWCC	2 cut(s)	82, 1601
XagI	CCTNNNNNAGG	3 cut(s)	197, 233, 1589
XapI	RAATTY	5 cut(s)	1256, 1292, 2194, 2240, 2262
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	2 cut(s)	535, 914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	264, 880
XmiI	GTMKAC	4 cut(s)	155, 408, 1366, 1836
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	6 cut(s)	377, 641, 819, 1428, 1619, 2404
Zsp2I	ATGCAT	1 cut(s)	2282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.