Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

758192 .. 763190

Gene Structure 4999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGCATGGAGCTCAAGAAAGACGAAGATCGTCAGGAGGAGCTGAGGGTCACCGCCACGACTCCTCTGACGATGAAGGATTCGAGGTCGAGGACGACGAGCTCATCACCGATTCGAGGTCGTCGTCGAGACAGTTCTGGTGGAAAAGGCGTTTCTCTTTGAAGAGAAGTGAGTCTGCAGGCACTAATGCCACCACTGTTGAGACTACTGCGGCCAATGCAAGCAGAACATCATCATCATCGGCTTCTAATTCGCTTTTCAGTAGAATGGTCATTCATCCCGATAACTGGTGGTACGTGGGGTGGACGCATTTCATTCTGTTATGGGCAGTCTACTCCTCCTTCTTCACACCTCTGGAGTTCGGCTTCTTCAGAGGCCTGCCGGAGAACCTGTTCATGCTCGACAGCTGCGGCCAGATAGCCTTTCTCATCGATATCATCGTCCGCTTCTTCGTCGCCTATCGCGACTTCCACTCCCACCGCATTGTCTACGATCGCCACCTCATCGCTCTCCGATACCTCAAGTCTCGTTTCCTCGTCGATTTTCTCGGCTGTCTTCCCTGGGATGCCATCTATAAGGCTTCTGGGAGAGAAGAGGCGGTGAGGTACTTACTGTGGATACGGCTAAGCCGGGCACGGAGAGTAACGGAGTTTTTTGAGAAATTGGAGAAAGATATCAGAATCAATTACCTGTTTACAAGAATTGCCAAGCTATTTGTTGTTGAACTTTATAGCACACACACAGCTGCTTGCATATTTTATTATCTGGCTACTACCATGCCTCCATCACAGGAAGGTTACACATGGATTGGGAGTTTGAAGATGGGTGACTATAGCTATGCACATTTCAGGGAGATTGATCTTTGGAAGCGTTACATAACTTCGCTCTATTTTGCAGTTGTTACCATGGCCACCGTTGGTTATGGAGAGATACATGCAGTGAATGTGAGGGAGATGATATTCATCATGTTTTATGTGTCTTTCGATATGATTCTTGGTGCTTATCTGCTTGGTAACATTGCGGCATTGATAGTGAAAGGATCAAAAACAGAGAAGTTTAGGGACAAGATGGCGGACCTTATCAAATACATGAATAGAAACCGTATTGATAGAGGGATAAGTAAGGAAATTAAAAACCATTTGAGATTACAGTATGACCGTAGCTACACCGAAGCTGCTGTTCTTCAGGATATCCCTGCCTCTATTCGCAGTAAGATTTCACAGAAATTGTATGAGCCATACATCAAAGAAGTTCATCTTTTTAAAGGGTGCTCTACGGGATTCATAAAACAGATAGCAACGAGAATTCATGAGGAGTTTTTCCTTCCAGCAGAAGTGATTATAGAGCAGGGGGATGTAGTAGATCACCTATATATAGTATGCCATGGTGAACTGGAAAAGCTGGGAAGGGGTGAAGATGATGACAGTGAAGAGCTGCTTGAGCGTTTGCAAACCTATAGCTCATTTGGAGAGGTTTCTTTTCTTTGCAACACTCCCCAGCCGTATGCTGTTCGGGTTTGTCAACTGTGTAGGGTCTTACGACTTGATAGACAGTCCTTTAGAGAAATACTGGAGATATATTTCTTAGATGGCCGGCTTATCTTGGATAACCTGCTTGAGGGAAAAGACTTGTATACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATATATCGGAAAGCATGAAATGGAGTTAGTTATGAAAGTAAATTGTGCTGTCTATGATGGAGATTTTTATCGAGTAAAACGTTTGATTGGAGCTGGTGTAGATCCAAACAAGGTGGATTATGCTGGAAGGTCCCCTCTGCATGTTGCTGCATCAAAAGGGTACGAGGATATTGCTCGTTTTCTTATTGAAAAAGGGGGAGACGTCAAGATGTCAGATAAGTTTGGGAAGACTCCATTGCTTGAAGCCATAAAAAATGGGCATGATCAAGTTGCTTCTTTACTTGTTCAGGCAGGGGCATCACTTACTATTGAAGATGCTGGTGATTTTCTCTGTGCTACTGTAGCAAAGAGGGATTTGGACCTCGTGAAAAGGCTTTTAGCCAATGACATGAATCCAAATGCGAAAAATTATGATCAGAGATCACCACTACATGTAGCTGCTTCAGAAGGGTTATATCCAATGGCAGAGTTCCTATTAGAAGCAGGAGCAAGTGTTCTATCAAAGGACAGATGGGGGAAAACTCCACTTGATGAAGCCCGCATAGGTGGAAGTAACAAGCTAATGCAATTGCTCGAATCTACAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAAGTAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

766

Amino Acids

87.76

Weight (kDa)

6.5

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	101 - 348	1.2e-25	Ion transport protein
Ion_trans_2	PF07885	288 - 344	3.8e-08	Ion channel
cNMP_binding	PF00027	439 - 524	1.8e-16	Cyclic nucleotide-binding domain
Ank_4	PF13637	571 - 618	1.7e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	572 - 661	1.4e-16	Ankyrin repeats (3 copies)
Ank_5	PF13857	588 - 635	3.4e-08	Ankyrin repeats (many copies)
Ank	PF00023	598 - 628	6.3e-06	Ankyrin repeat
Ank_4	PF13637	602 - 650	1.3e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	670 - 747	2.8e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	671 - 715	2.6e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	681 - 735	4.6e-10	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1872
Acc36I	ACCTGC	1 cut(s)	1617
AccI	GTMKAC	3 cut(s)	330, 486, 1631
AccII	CGCG	1 cut(s)	462
AciI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2206
AclI	AACGTT	1 cut(s)	1747
AclWI	GGATC	2 cut(s)	1045, 1763
AcoI	YGGCCR	4 cut(s)	210, 409, 906, 1588
AcsI	RAATTY	1 cut(s)	1302
AcuI	CTGAAG	3 cut(s)	352, 1166, 2094
AcyI	GRCGYC	1 cut(s)	1869
AfaI	GTAC	3 cut(s)	293, 605, 1829
AfiI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
AflIII	ACRYGT	1 cut(s)	2098
AgsI	TTSAA	6 cut(s)	160, 722, 817, 1856, 1910, 1979
AjnI	CCWGG	1 cut(s)	557
AjuI	GAANNNNNNNTTGG	2 cut(s)	1631, 1663
AloI	GAACNNNNNNTCC	4 cut(s)	374, 406, 2145, 2177
Alw21I	GWGCWC	3 cut(s)	13, 102, 1271
Alw26I	GTCTC	4 cut(s)	121, 194, 528, 1860
AlwI	GGATC	2 cut(s)	1045, 1763
AoxI	GGCC	5 cut(s)	210, 373, 409, 906, 1588
ApeKI	GCWGC	6 cut(s)	405, 743, 1172, 1432, 1814, 2105
ApoI	RAATTY	1 cut(s)	1302
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	1072, 1797, 2026
AsuC2I	CCSGG	2 cut(s)	629, 1636
AsuHPI	GGTGA	9 cut(s)	41, 97, 610, 836, 1355, 1397, 1421, 2000, 2082
AvaII	GGWCC	3 cut(s)	1072, 1797, 2026
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	13, 102
BauI	CACGAG	1 cut(s)	2030
BbsI	GAAGAC	2 cut(s)	545, 1901
Bbv12I	GWGCWC	3 cut(s)	13, 102, 1271
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	392, 730, 1159, 1419, 1801, 2092
BccI	CCATC	8 cut(s)	575, 790, 814, 1060, 1580, 1718, 2172, 2273
BceAI	ACGGC	2 cut(s)	635, 1483
BcgI	CGANNNNNNTGC	2 cut(s)	1820, 1854
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	2 cut(s)	1930, 2080
BcnI	CCSGG	2 cut(s)	629, 1636
BcoDI	GTCTC	4 cut(s)	121, 194, 528, 1860
BfmI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
BfuAI	ACCTGC	1 cut(s)	1617
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1433, 1815, 2106
BlpI	GCTNAGC	1 cut(s)	623
BlsI	GCNGC	9 cut(s)	211, 407, 410, 745, 1021, 1174, 1434, 1816, 2107
Bme1390I	CCNGG	3 cut(s)	559, 629, 1636
Bme18I	GGWCC	3 cut(s)	1072, 1797, 2026
BmgT120I	GGNCC	3 cut(s)	1072, 1797, 2026
BmiI	GGNNCC	1 cut(s)	1799
BmrFI	CCNGG	3 cut(s)	559, 629, 1636
BmsI	GCATC	4 cut(s)	553, 1826, 1972, 1973
BpiI	GAAGAC	2 cut(s)	545, 1901
BpmI	CTGGAG	2 cut(s)	374, 1589
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	4 cut(s)	503, 1457, 1634, 2271
BpuMI	CCSGG	2 cut(s)	629, 1636
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	2 cut(s)	959, 1734
BsaHI	GRCGYC	1 cut(s)	1869
BsaJI	CCNNGG	4 cut(s)	557, 558, 903, 1381
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
Bse118I	RCCGGY	1 cut(s)	1590
Bse1I	ACTGG	3 cut(s)	290, 1395, 1572
Bse3DI	GCAATG	2 cut(s)	1014, 1901
Bse8I	GATNNNNATC	2 cut(s)	959, 1734
BseBI	CCWGG	1 cut(s)	559
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	557, 558, 903, 1381
BseGI	GGATG	3 cut(s)	274, 568, 1357
BseJI	GATNNNNATC	2 cut(s)	959, 1734
BseLI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
BseMI	GCAATG	2 cut(s)	1014, 1901
BseMII	CTCAG	2 cut(s)	33, 2273
BseNI	ACTGG	3 cut(s)	290, 1395, 1572
BseRI	GAGGAG	4 cut(s)	51, 52, 325, 1325
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	6 cut(s)	392, 730, 1159, 1419, 1801, 2092
BseYI	CCCAGC	2 cut(s)	1399, 1494
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	3 cut(s)	13, 102, 1271
BsiSI	CCGG	4 cut(s)	380, 628, 1591, 1636
BslFI	GGGAC	2 cut(s)	1073, 1783
BslI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
BsmAI	GTCTC	4 cut(s)	121, 194, 528, 1860
BsmBI	CGTCTC	1 cut(s)	1860
BsmFI	GGGAC	2 cut(s)	1073, 1783
BsnI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
Bsp1286I	GDGCHC	4 cut(s)	13, 102, 634, 1271
Bsp143I	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
Bsp1720I	GCTNAGC	1 cut(s)	623
Bsp19I	CCATGG	2 cut(s)	903, 1381
Bsp68I	TCGCGA	1 cut(s)	462
BspACI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2206
BspANI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BspCNI	CTCAG	2 cut(s)	34, 2272
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	1306
BspLI	GGNNCC	1 cut(s)	1799
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	1617
BspPI	GGATC	2 cut(s)	1045, 1763
BspQI	GCTCTTC	1 cut(s)	1422
BsrDI	GCAATG	2 cut(s)	1014, 1901
BsrFI	RCCGGY	1 cut(s)	1590
BsrI	ACTGG	3 cut(s)	290, 1395, 1572
BssAI	RCCGGY	1 cut(s)	1590
BssECI	CCNNGG	4 cut(s)	557, 558, 903, 1381
BssMI	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
BssNAI	GTATAC	1 cut(s)	1632
BssNI	GRCGYC	1 cut(s)	1869
BssSI	CACGAG	1 cut(s)	2030
BssT1I	CCWWGG	2 cut(s)	903, 1381
Bst1107I	GTATAC	1 cut(s)	1632
Bst2BI	CACGAG	1 cut(s)	2030
Bst2UI	CCWGG	1 cut(s)	559
Bst6I	CTCTTC	3 cut(s)	155, 585, 1422
BstACI	GRCGYC	1 cut(s)	1869
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1592, 2206
BstDEI	CTNAG	4 cut(s)	42, 623, 1582, 2259
BstDSI	CCRYGG	2 cut(s)	903, 1381
BstEII	GGTNACC	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	1613
BstF5I	GGATG	3 cut(s)	274, 568, 1357
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	9 cut(s)	29, 493, 859, 1040, 1363, 1771, 1933, 2083, 2090
BstMAI	GTCTC	4 cut(s)	121, 194, 528, 1860
BstMBI	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 1438, 2009
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	3 cut(s)	935, 1811, 2102
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	557, 627, 1634
BstSFI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	6 cut(s)	392, 730, 1159, 1419, 1801, 2092
BstV2I	GAAGAC	2 cut(s)	545, 1901
BstX2I	RGATCY	1 cut(s)	1768
BstYI	RGATCY	1 cut(s)	1768
BstZ17I	GTATAC	1 cut(s)	1632
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	903, 1381
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	274, 568, 1357
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	3 cut(s)	192, 942, 1429
BtuMI	TCGCGA	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	1617
Cac8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1592, 2206
CciI	TCATGA	1 cut(s)	1306
Cfr10I	RCCGGY	1 cut(s)	1590
Cfr13I	GGNCC	3 cut(s)	1072, 1797, 2026
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	292, 604, 1828
CspCI	CAANNNNNGTGG	4 cut(s)	178, 213, 1761, 1796
CviQI	GTAC	3 cut(s)	292, 604, 1828
DdeI	CTNAG	4 cut(s)	42, 623, 1582, 2259
DpnI	GATC	9 cut(s)	28, 492, 858, 1039, 1362, 1770, 1932, 2082, 2089
DpnII	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
DraI	TTTAAA	1 cut(s)	1261
EaeI	YGGCCR	4 cut(s)	210, 409, 906, 1588
Eam1104I	CTCTTC	3 cut(s)	155, 585, 1422
EarI	CTCTTC	3 cut(s)	155, 585, 1422
EciI	GGCGGA	1 cut(s)	1085
Ecl136II	GAGCTC	2 cut(s)	11, 100
Eco130I	CCWWGG	2 cut(s)	903, 1381
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	13, 102
Eco32I	GATATC	4 cut(s)	433, 673, 1189, 1660
Eco47I	GGWCC	3 cut(s)	1072, 1797, 2026
Eco53kI	GAGCTC	2 cut(s)	11, 100
Eco57I	CTGAAG	3 cut(s)	352, 1166, 2094
Eco91I	GGTNACC	1 cut(s)	47
EcoICRI	GAGCTC	2 cut(s)	11, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	1613
EcoO109I	RGGNCCY	1 cut(s)	1797
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	1302
EcoRII	CCWGG	1 cut(s)	557
EcoRV	GATATC	4 cut(s)	433, 673, 1189, 1660
EcoT14I	CCWWGG	2 cut(s)	903, 1381
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	13, 102
ErhI	CCWWGG	2 cut(s)	903, 1381
Esp3I	CGTCTC	1 cut(s)	1860
FalI	AAGNNNNNCTT	4 cut(s)	1239, 1271, 1419, 1451
FaqI	GGGAC	2 cut(s)	1073, 1783
FauI	CCCGC	1 cut(s)	2213
FbaI	TGATCA	2 cut(s)	1930, 2080
FblI	GTMKAC	3 cut(s)	330, 486, 1631
Fnu4HI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1433, 1815, 2106
FokI	GGATG	3 cut(s)	261, 575, 1364
FriOI	GRGCYC	2 cut(s)	13, 102
Fsp4HI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1433, 1815, 2106
GluI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1433, 1815, 2106
GsaI	CCCAGC	2 cut(s)	1403, 1498
GsuI	CTGGAG	2 cut(s)	374, 1589
HaeIII	GGCC	5 cut(s)	212, 375, 411, 908, 1590
HapII	CCGG	4 cut(s)	380, 628, 1591, 1636
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	1869
HincII	GTYRAC	1 cut(s)	1520
HindII	GTYRAC	1 cut(s)	1520
HindIII	AAGCTT	1 cut(s)	1643
HpaII	CCGG	4 cut(s)	380, 628, 1591, 1636
HphI	GGTGA	9 cut(s)	41, 97, 610, 836, 1355, 1397, 1421, 2000, 2082
Hpy166II	GTNNAC	7 cut(s)	303, 331, 487, 693, 1388, 1520, 1632
Hpy8I	GTNNAC	7 cut(s)	303, 331, 487, 693, 1388, 1520, 1632
Hpy99I	CGWCG	5 cut(s)	98, 124, 127, 455, 539
HpyAV	CCTTC	7 cut(s)	68, 349, 785, 1331, 1398, 1788, 2108
HpyCH4IV	ACGT	3 cut(s)	294, 1747, 1869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 1438, 2009
HpyF3I	CTNAG	4 cut(s)	42, 623, 1582, 2259
HpySE526I	ACGT	3 cut(s)	294, 1747, 1869
Hsp92I	GRCGYC	1 cut(s)	1869
KroI	GCCGGC	1 cut(s)	1590
KroNI	GCCGGC	1 cut(s)	1592
Ksp22I	TGATCA	2 cut(s)	1930, 2080
Kzo9I	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
LguI	GCTCTTC	1 cut(s)	1422
LmnI	GCTCC	4 cut(s)	8, 38, 1757, 2153
Lsp1109I	GCAGC	6 cut(s)	392, 730, 1159, 1419, 1801, 2092
LweI	GCATC	4 cut(s)	553, 1826, 1972, 1973
MaeII	ACGT	3 cut(s)	294, 1747, 1869
MaeIII	GTNAC	8 cut(s)	47, 640, 794, 824, 869, 898, 1010, 2219
MalI	GATC	9 cut(s)	28, 492, 858, 1039, 1362, 1770, 1932, 2082, 2089
MboI	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
MfeI	CAATTG	1 cut(s)	2234
MflI	RGATCY	1 cut(s)	1768
MhlI	GDGCHC	4 cut(s)	13, 102, 634, 1271
MlsI	TGGCCA	1 cut(s)	908
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	3 cut(s)	53, 179, 1891
Mox20I	TGGCCA	1 cut(s)	908
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	1590
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	2 cut(s)	1128, 1260
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	405, 743
MspI	CCGG	4 cut(s)	380, 628, 1591, 1636
MspR9I	CCNGG	3 cut(s)	559, 629, 1636
MunI	CAATTG	1 cut(s)	2234
MvaI	CCWGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	215, 1438, 2009
NaeI	GCCGGC	1 cut(s)	1592
NciI	CCSGG	2 cut(s)	629, 1636
NcoI	CCATGG	2 cut(s)	903, 1381
NdeII	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
NgoMIV	GCCGGC	1 cut(s)	1590
NlaIV	GGNNCC	1 cut(s)	1799
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	47, 824
NruI	TCGCGA	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	935, 1811, 2102
PagI	TCATGA	1 cut(s)	1306
PasI	CCCWGGG	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	375
PciI	ACATGT	1 cut(s)	2098
PciSI	GCTCTTC	1 cut(s)	1422
PcsI	WCGNNNNNNNCGW	5 cut(s)	93, 119, 435, 459, 1744
PdiI	GCCGGC	1 cut(s)	1592
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	8 cut(s)	78, 110, 678, 988, 1278, 1652, 2059, 2243
PkrI	GCNGC	9 cut(s)	211, 407, 410, 745, 1021, 1174, 1434, 1816, 2107
Ple19I	CGATCG	1 cut(s)	493
PleI	GAGTC	3 cut(s)	53, 178, 1891
PpsI	GAGTC	3 cut(s)	53, 178, 1891
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	1797
PscI	ACATGT	1 cut(s)	2098
Psp124BI	GAGCTC	2 cut(s)	13, 102
Psp1406I	AACGTT	1 cut(s)	1747
Psp5II	RGGWCCY	1 cut(s)	1797
Psp6I	CCWGG	1 cut(s)	557
PspEI	GGTNACC	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	1399, 1494
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	1799
PspPI	GGNCC	3 cut(s)	1072, 1797, 2026
PspPPI	RGGWCCY	1 cut(s)	1797
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	1768
PvuI	CGATCG	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	405, 743
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	3 cut(s)	293, 605, 1829
RsaNI	GTAC	3 cut(s)	292, 604, 1828
SacI	GAGCTC	2 cut(s)	13, 102
SapI	GCTCTTC	1 cut(s)	1422
SaqAI	TTAA	2 cut(s)	1128, 1260
SatI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1433, 1815, 2106
Sau3AI	GATC	9 cut(s)	26, 490, 856, 1037, 1360, 1768, 1930, 2080, 2087
Sau96I	GGNCC	3 cut(s)	1072, 1797, 2026
SchI	GAGTC	3 cut(s)	53, 179, 1891
ScrFI	CCNGG	3 cut(s)	559, 629, 1636
SduI	GDGCHC	4 cut(s)	13, 102, 634, 1271
SfaNI	GCATC	4 cut(s)	553, 1826, 1972, 1973
SfcI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
SinI	GGWCC	3 cut(s)	1072, 1797, 2026
SmlI	CTYRAG	5 cut(s)	12, 518, 1436, 1613, 2286
SmoI	CTYRAG	5 cut(s)	12, 518, 1436, 1613, 2286
SseBI	AGGCCT	1 cut(s)	375
SsiI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2206
SstI	GAGCTC	2 cut(s)	13, 102
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	557, 627, 1634
StyI	CCWWGG	2 cut(s)	903, 1381
TaiI	ACGT	3 cut(s)	297, 1750, 1872
TauI	GCSGC	3 cut(s)	212, 411, 1022
TfiI	GAWTC	8 cut(s)	78, 110, 678, 988, 1278, 1652, 2059, 2243
Tru1I	TTAA	2 cut(s)	1128, 1260
Tru9I	TTAA	2 cut(s)	1128, 1260
TscAI	CASTG	3 cut(s)	199, 942, 1429
TseFI	GTSAC	2 cut(s)	47, 824
TseI	GCWGC	6 cut(s)	405, 743, 1172, 1432, 1814, 2105
Tsp45I	GTSAC	2 cut(s)	47, 824
TspGWI	ACGGA	2 cut(s)	649, 659
TspRI	CASTG	3 cut(s)	199, 942, 1429
VpaK11BI	GGWCC	3 cut(s)	1072, 1797, 2026
XagI	CCTNNNNNAGG	1 cut(s)	1613
XapI	RAATTY	1 cut(s)	1302
XceI	RCATGY	3 cut(s)	935, 1811, 2102
XmiI	GTMKAC	3 cut(s)	330, 486, 1631
XmnI	GAANNNNTTC	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	1870
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.