Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Forward (+)

23918832 .. 23919491

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCAATAAAAGAGGTCGTCGTGGTCGGGGTCGAGGCAAGAACAATATCAGCAACAACAACAAGAATAACAATGAAGACGTACAGGCTCTAGTTGATTATTTACCCCAAAATGTAATTCGAAAGCGAAGGACTACTACCCCGAAGAAAAACCTTGGTATCCGGAAGAAAAGAACATTTGACAACATCACTGAACTGGAAGCAGATTTCTTCAAAGATGTGGAAGAGGCAGATGATTTGCCTGAGAATTATGAAATTCCTGGGCCAATTCCTGACTTGGTGGGCTTGTATACATACCCATTAGATGTGGCTTATCATCGTTTGTACAAGAGAAGGAGATCAGATGATGGTACAAGGAGGAGTGTTAGTAGAAAAGAAAATGAAGTGATATCTGCAGCCAAGGAGAGAGAGACCACCCCCAACTCCAAGATGGGCATTACAGTCAGTGATCACTTGTCAATGGGTTCTGCTCATGTTCAGAATAATGGTACTGGTACTTCTGGTGAAAAGATTCAAGAATCCAACTCTAAGCCTTGGATTCTAAAATATGAAACTCCAGGACCAATTTCATATAATCTTGATGAAATAATGAGCAATCAAAGTCTTTTTGTGAATTTCTGGGTAGATATTGATGATTGTAATGATTCAGATAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

219

Amino Acids

25.09

Weight (kDa)

6.86

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	255, 613
AfaI	GTAC	5 cut(s)	84, 326, 352, 490, 496
AgsI	TTSAA	3 cut(s)	7, 214, 515
AjnI	CCWGG	2 cut(s)	259, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
Alw26I	GTCTC	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	255, 613
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	263, 560
AsuHPI	GGTGA	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BarI	GAAGNNNNNNTAC	4 cut(s)	121, 153, 481, 513
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	341, 424
BciT130I	CCWGG	2 cut(s)	261, 558
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	261, 558
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	263, 560
BmrFI	CCNGG	2 cut(s)	261, 558
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	154, 260, 399, 533
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bse1I	ACTGG	2 cut(s)	201, 496
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	261, 558
BseDI	CCNNGG	4 cut(s)	154, 260, 399, 533
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	201, 496
BseRI	GAGGAG	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	338, 448
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	235
BspEI	TCCGGA	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	404
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	201, 496
BssECI	CCNNGG	4 cut(s)	154, 260, 399, 533
BssMI	GATC	2 cut(s)	338, 448
BssNAI	GTATAC	1 cut(s)	291
BssT1I	CCWWGG	3 cut(s)	154, 399, 533
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	261, 558
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	243, 528
BstKTI	GATC	2 cut(s)	341, 451
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	338, 448
BstNI	CCWGG	2 cut(s)	261, 558
BstSCI	CCNGG	2 cut(s)	259, 556
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	84
BstZ17I	GTATAC	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	189, 451
Cfr13I	GGNCC	2 cut(s)	263, 560
Csp6I	GTAC	5 cut(s)	83, 325, 351, 489, 495
CviAII	CATG	1 cut(s)	473
CviJI	RGCY	6 cut(s)	89, 265, 285, 311, 398, 532
CviKI_1	RGCY	6 cut(s)	89, 265, 285, 311, 398, 532
CviQI	GTAC	5 cut(s)	83, 325, 351, 489, 495
DdeI	CTNAG	2 cut(s)	243, 528
DpnI	GATC	2 cut(s)	340, 450
DpnII	GATC	2 cut(s)	338, 448
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	154, 399, 533
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	259, 556
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	3 cut(s)	154, 399, 533
ErhI	CCWWGG	3 cut(s)	154, 399, 533
FaeI	CATG	1 cut(s)	476
FaiI	YATR	7 cut(s)	252, 291, 295, 474, 549, 571, 573
FatI	CATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	1 cut(s)	476
HinfI	GANTC	4 cut(s)	511, 518, 538, 644
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	343, 480, 649
Hpy188III	TCNNGA	4 cut(s)	163, 272, 515, 578
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	123, 327
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	243, 528
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	338, 448
Lsp1109I	GCAGC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	81
MalI	GATC	2 cut(s)	340, 450
MboI	GATC	2 cut(s)	338, 448
MboII	GAAGA	5 cut(s)	89, 157, 178, 202, 236
MluCI	AATT	6 cut(s)	117, 247, 255, 267, 564, 613
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	4 cut(s)	8, 29, 220, 351
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	510
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	261, 558
MvaI	CCWGG	2 cut(s)	261, 558
NdeII	GATC	2 cut(s)	338, 448
NlaIII	CATG	1 cut(s)	476
NspV	TTCGAA	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	511, 518, 538, 644
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	259, 556
PspGI	CCWGG	2 cut(s)	259, 556
PspPI	GGNCC	2 cut(s)	263, 560
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	5 cut(s)	84, 326, 352, 490, 496
RsaNI	GTAC	5 cut(s)	83, 325, 351, 489, 495
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	338, 448
Sau96I	GGNCC	2 cut(s)	263, 560
ScrFI	CCNGG	2 cut(s)	261, 558
SetI	ASST	3 cut(s)	19, 84, 156
SfcI	CTRYAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	1 cut(s)	560
Sse9I	AATT	6 cut(s)	117, 247, 255, 267, 564, 613
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	259, 556
StyI	CCWWGG	3 cut(s)	154, 399, 533
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	34, 121
TasI	AATT	6 cut(s)	117, 247, 255, 267, 564, 613
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	4 cut(s)	511, 518, 538, 644
TscAI	CASTG	2 cut(s)	196, 451
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	6 cut(s)	90, 267, 396, 558, 564, 597
TspRI	CASTG	2 cut(s)	196, 451
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	255, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.