Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

913387 .. 918833

Gene Structure 5447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGCATGGAGCTCAAGAAAGACGAAGATCGTCAGGAGGAGCTGAGGGTCACCGCCACGACTCCTCTGACGATGAAGGATTCGAGGTCGAGGACGACGAGCTCATCACCGATTCGAGGTCGTCGTCGAGACAGTTCTGGTGGAAAAGGCGTTTCTCTTTGAAGAGAAGTGAGTCTGCAGGCACTAATGCCACCACTGTTGAGACTACTGCGGCCAATGCAAGCAGAACATCATCATCATCGGCTTCTAATTCGCTTTTCAGTAGAATGGTCATTCATCCCGATAACTGGTGGTACGTGGGGTGGACGCATTTCATTCTGTTATGGGCAGTCTACTCCTCCTTCTTCACACCTCTGGAGTTCGGCTTCTTCAGAGGCCTGCCGGAGAACCTGTTCATGCTCGACAGCTGCGGCCAGATAGCCTTTCTCATCGATATCATCGTCCGCTTCTTCGTCGCCTATCGCGACTTCCACTCCCACCGCATTGTCTACGATCGCCACCTCATCGCTCTCCGATACCTCAAGTCTCGTTTCCTCGTCGATTTTCTCGGCTGTCTTCCCTGGGATGCCATCTATAAGGCTTCTGGGAGAGAAGAGGCGGTGAGGTACTTATTGTGGATACGGCTAAGCCGGGCACGGAGAGTAACGGAGTTTTTTGAGAAATTGGAGAAAGATATCAGAATCAATTACCTGTTTACAAGAATTGCCAAGCTATTTGTTGTTGAACTTTATAGCACACACACAGCTGCTTGCATATTTTATTATCTGGCTACTACCATGCCTCCATCACAGGAAGGTTACACATGGATTGGGAGTTTGAAGATGGGTGACTATAGCTATGCACATTTCAGGGAGATTGATCTTTGGAAGCGTTACATAACTTCGCTCTATTTTGCAGTTGTTACCATGGCCACCGTTGGTTATGGAGAGATACATGCAGTGAATGTGAGGGAGATGATATTCATCATGTTTTATGTGTCTTTTGATATGATCCTTGGTGCTTATCTGCTTGGTAACATTGCGGCATTGATAGTGAAAGGATCAAAAACAGAGAAGTTTAGGGACAAGATGGCGGACCTTATCAAATACATGAATAGAAACCGTATTGATAGAGGGATAAGTAAGGAAATTAAAAACCATTTGAGATTACAGTATGACCGTAGCTACACCGAAGCTGCTGTTCTTCAGGATATCCCTGCCTCTATTCGCAGTAAGGAAAAGCTGGGAAGGGGTGAAGATGATGACAGTGAAGAGCTGCTTGAGCGTTTGCAAACCTATAGCTCATTTGGAGAGGTTTCTTTTCTTTGCAACACTCCCCAGCCGTATGCTGTTCGGGTTTGTCAACTGTGTAGGGTCTTACGACTTGATAGACAGTCCTTTAGAGAAATACTGGAGATATATTTCTTAGATGGCCGGCTAATCTTGGATAACCTGCTTGAGGGAAAAGACTTGTATACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATATATCGGAAAGCATGAAATGGAGTTAGTTATGAAAGTAAATTGTGCTGTCTATGATGGAGATTTTTATCGAGTAAAACGTTTGATTGGAGCTGGTGTAGATCCAAACAAGGTGGATTATGCTGGAAGGTCCCCTTTGCATGTTGCTGCATCAAAAGGGTACGAGGATATTGCTCGTTTTCTTATTGAAAAAGGGGGAGACGTCAAGATGTCAGATAAGTTTGGGAAGACTCCATTGCTTGAAGCCATAAAAAATGGGCATGATCAAGTTGCTTCTTTACTTGTTCAGGCAGGGGCATCACTTACTATTGAAGATGCTGGTGATTTTCTCTGTGCTACTGTAGCAAAGAGGGATTTGGACCTCGTAAAAAGGCTTTTAGCCAATGACATGAATCCAAATGCGAAAAATTATGATCAGAGATCACCACTACATGTAGCTGCTTCAGAAGGGTTATATCCAATGGCAGAGTTCCTATTAGAAGCAGGAGCAAGTGTTCTATCAAAGGACAGATGGGGGAAAACTCCACTTGATGAAGCCCGCATAGGTGGAAGTAACAAGCTAATGCAATTGCTCGAATCTACAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAAGTAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

706

Amino Acids

80.84

Weight (kDa)

6.98

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	101 - 348	1e-25	Ion transport protein
Ion_trans_2	PF07885	288 - 344	3.4e-08	Ion channel
cNMP_binding	PF00027	412 - 464	1.6e-07	Cyclic nucleotide-binding domain
Ank_4	PF13637	511 - 558	1.5e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	512 - 601	1.3e-16	Ankyrin repeats (3 copies)
Ank_5	PF13857	528 - 575	3.1e-08	Ankyrin repeats (many copies)
Ank	PF00023	538 - 568	5.8e-06	Ankyrin repeat
Ank_4	PF13637	542 - 590	1.2e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	610 - 687	2.5e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	611 - 655	2.4e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	621 - 675	4.1e-10	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1692
Acc36I	ACCTGC	1 cut(s)	1437
AccI	GTMKAC	3 cut(s)	330, 486, 1451
AccII	CGCG	1 cut(s)	462
AciI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2026
AclI	AACGTT	1 cut(s)	1567
AclWI	GGATC	3 cut(s)	982, 1045, 1583
AcoI	YGGCCR	4 cut(s)	210, 409, 906, 1408
AcuI	CTGAAG	3 cut(s)	352, 1166, 1914
AcyI	GRCGYC	1 cut(s)	1689
AfaI	GTAC	3 cut(s)	293, 605, 1649
AfiI	CCNNNNNNNGG	3 cut(s)	114, 285, 1435
AflIII	ACRYGT	1 cut(s)	1918
AgsI	TTSAA	6 cut(s)	160, 722, 817, 1676, 1730, 1799
AjnI	CCWGG	1 cut(s)	557
AjuI	GAANNNNNNNTTGG	2 cut(s)	1451, 1483
AloI	GAACNNNNNNTCC	4 cut(s)	374, 406, 1965, 1997
Alw21I	GWGCWC	2 cut(s)	13, 102
Alw26I	GTCTC	4 cut(s)	121, 194, 528, 1680
AlwI	GGATC	3 cut(s)	982, 1045, 1583
AoxI	GGCC	5 cut(s)	210, 373, 409, 906, 1408
ApeKI	GCWGC	6 cut(s)	405, 743, 1172, 1252, 1634, 1925
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	1072, 1617, 1846
AsuC2I	CCSGG	2 cut(s)	629, 1456
AsuHPI	GGTGA	7 cut(s)	41, 97, 610, 836, 1241, 1820, 1902
AvaII	GGWCC	3 cut(s)	1072, 1617, 1846
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	13, 102
BbsI	GAAGAC	2 cut(s)	545, 1721
Bbv12I	GWGCWC	2 cut(s)	13, 102
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	392, 730, 1159, 1239, 1621, 1912
BccI	CCATC	8 cut(s)	575, 790, 814, 1060, 1400, 1538, 1992, 2093
BceAI	ACGGC	2 cut(s)	635, 1303
BcgI	CGANNNNNNTGC	2 cut(s)	1640, 1674
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	2 cut(s)	1750, 1900
BcnI	CCSGG	2 cut(s)	629, 1456
BcoDI	GTCTC	4 cut(s)	121, 194, 528, 1680
BfmI	CTRYAG	4 cut(s)	174, 829, 1273, 1827
BfuAI	ACCTGC	1 cut(s)	1437
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1253, 1635, 1926
BlpI	GCTNAGC	1 cut(s)	623
BlsI	GCNGC	9 cut(s)	211, 407, 410, 745, 1021, 1174, 1254, 1636, 1927
Bme1390I	CCNGG	3 cut(s)	559, 629, 1456
Bme18I	GGWCC	3 cut(s)	1072, 1617, 1846
BmgT120I	GGNCC	3 cut(s)	1072, 1617, 1846
BmiI	GGNNCC	1 cut(s)	1619
BmrFI	CCNGG	3 cut(s)	559, 629, 1456
BmsI	GCATC	4 cut(s)	553, 1646, 1792, 1793
BpiI	GAAGAC	2 cut(s)	545, 1721
BpmI	CTGGAG	2 cut(s)	374, 1409
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	4 cut(s)	503, 1277, 1454, 2091
BpuMI	CCSGG	2 cut(s)	629, 1456
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	2 cut(s)	959, 1554
BsaHI	GRCGYC	1 cut(s)	1689
BsaJI	CCNNGG	4 cut(s)	557, 558, 903, 991
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 285, 1435
Bse118I	RCCGGY	1 cut(s)	1410
Bse1I	ACTGG	2 cut(s)	290, 1392
Bse3DI	GCAATG	2 cut(s)	1014, 1721
Bse8I	GATNNNNATC	2 cut(s)	959, 1554
BseBI	CCWGG	1 cut(s)	559
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	557, 558, 903, 991
BseGI	GGATG	2 cut(s)	274, 568
BseJI	GATNNNNATC	2 cut(s)	959, 1554
BseLI	CCNNNNNNNGG	3 cut(s)	114, 285, 1435
BseMI	GCAATG	2 cut(s)	1014, 1721
BseMII	CTCAG	2 cut(s)	33, 2093
BseNI	ACTGG	2 cut(s)	290, 1392
BseRI	GAGGAG	3 cut(s)	51, 52, 325
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	6 cut(s)	392, 730, 1159, 1239, 1621, 1912
BseYI	CCCAGC	2 cut(s)	1219, 1314
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	5 cut(s)	212, 375, 411, 908, 1410
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	13, 102
BsiSI	CCGG	4 cut(s)	380, 628, 1411, 1456
BslFI	GGGAC	2 cut(s)	1073, 1603
BslI	CCNNNNNNNGG	3 cut(s)	114, 285, 1435
BsmAI	GTCTC	4 cut(s)	121, 194, 528, 1680
BsmBI	CGTCTC	1 cut(s)	1680
BsmFI	GGGAC	2 cut(s)	1073, 1603
BsnI	GGCC	5 cut(s)	212, 375, 411, 908, 1410
Bsp1286I	GDGCHC	3 cut(s)	13, 102, 634
Bsp143I	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
Bsp1720I	GCTNAGC	1 cut(s)	623
Bsp19I	CCATGG	1 cut(s)	903
Bsp68I	TCGCGA	1 cut(s)	462
BspACI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2026
BspANI	GGCC	5 cut(s)	212, 375, 411, 908, 1410
BspCNI	CTCAG	2 cut(s)	34, 2092
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	1619
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	1437
BspPI	GGATC	3 cut(s)	982, 1045, 1583
BspQI	GCTCTTC	1 cut(s)	1242
BsrDI	GCAATG	2 cut(s)	1014, 1721
BsrFI	RCCGGY	1 cut(s)	1410
BsrI	ACTGG	2 cut(s)	290, 1392
BssAI	RCCGGY	1 cut(s)	1410
BssECI	CCNNGG	4 cut(s)	557, 558, 903, 991
BssMI	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
BssNAI	GTATAC	1 cut(s)	1452
BssNI	GRCGYC	1 cut(s)	1689
BssT1I	CCWWGG	2 cut(s)	903, 991
Bst1107I	GTATAC	1 cut(s)	1452
Bst2UI	CCWGG	1 cut(s)	559
Bst6I	CTCTTC	3 cut(s)	155, 585, 1242
BstACI	GRCGYC	1 cut(s)	1689
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1412, 2026
BstDEI	CTNAG	4 cut(s)	42, 623, 1402, 2079
BstDSI	CCRYGG	1 cut(s)	903
BstEII	GGTNACC	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	1433
BstF5I	GGATG	2 cut(s)	274, 568
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	9 cut(s)	29, 493, 859, 990, 1040, 1591, 1753, 1903, 1910
BstMAI	GTCTC	4 cut(s)	121, 194, 528, 1680
BstMBI	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 1258, 1829
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	3 cut(s)	935, 1631, 1922
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	557, 627, 1454
BstSFI	CTRYAG	4 cut(s)	174, 829, 1273, 1827
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	6 cut(s)	392, 730, 1159, 1239, 1621, 1912
BstV2I	GAAGAC	2 cut(s)	545, 1721
BstX2I	RGATCY	1 cut(s)	1588
BstYI	RGATCY	1 cut(s)	1588
BstZ17I	GTATAC	1 cut(s)	1452
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	212, 375, 411, 908, 1410
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	903
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	274, 568
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	3 cut(s)	192, 942, 1249
BtuMI	TCGCGA	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	1437
Cac8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1412, 2026
Cfr10I	RCCGGY	1 cut(s)	1410
Cfr13I	GGNCC	3 cut(s)	1072, 1617, 1846
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	292, 604, 1648
CspCI	CAANNNNNGTGG	4 cut(s)	178, 213, 1581, 1616
CviQI	GTAC	3 cut(s)	292, 604, 1648
DdeI	CTNAG	4 cut(s)	42, 623, 1402, 2079
DpnI	GATC	9 cut(s)	28, 492, 858, 989, 1039, 1590, 1752, 1902, 1909
DpnII	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
EaeI	YGGCCR	4 cut(s)	210, 409, 906, 1408
Eam1104I	CTCTTC	3 cut(s)	155, 585, 1242
EarI	CTCTTC	3 cut(s)	155, 585, 1242
EciI	GGCGGA	1 cut(s)	1085
Ecl136II	GAGCTC	2 cut(s)	11, 100
Eco130I	CCWWGG	2 cut(s)	903, 991
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	13, 102
Eco32I	GATATC	4 cut(s)	433, 673, 1189, 1480
Eco47I	GGWCC	3 cut(s)	1072, 1617, 1846
Eco53kI	GAGCTC	2 cut(s)	11, 100
Eco57I	CTGAAG	3 cut(s)	352, 1166, 1914
Eco91I	GGTNACC	1 cut(s)	47
EcoICRI	GAGCTC	2 cut(s)	11, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	1433
EcoO109I	RGGNCCY	1 cut(s)	1617
EcoO65I	GGTNACC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	557
EcoRV	GATATC	4 cut(s)	433, 673, 1189, 1480
EcoT14I	CCWWGG	2 cut(s)	903, 991
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	13, 102
ErhI	CCWWGG	2 cut(s)	903, 991
Esp3I	CGTCTC	1 cut(s)	1680
FalI	AAGNNNNNCTT	4 cut(s)	1239, 1271, 1606, 1638
FaqI	GGGAC	2 cut(s)	1073, 1603
FauI	CCCGC	1 cut(s)	2033
FbaI	TGATCA	2 cut(s)	1750, 1900
FblI	GTMKAC	3 cut(s)	330, 486, 1451
Fnu4HI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1253, 1635, 1926
FokI	GGATG	2 cut(s)	261, 575
FriOI	GRGCYC	2 cut(s)	13, 102
Fsp4HI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1253, 1635, 1926
GluI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1253, 1635, 1926
GsaI	CCCAGC	2 cut(s)	1223, 1318
GsuI	CTGGAG	2 cut(s)	374, 1409
HaeIII	GGCC	5 cut(s)	212, 375, 411, 908, 1410
HapII	CCGG	4 cut(s)	380, 628, 1411, 1456
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	1689
HincII	GTYRAC	1 cut(s)	1340
HindII	GTYRAC	1 cut(s)	1340
HindIII	AAGCTT	1 cut(s)	1463
HinfI	GANTC	9 cut(s)	59, 78, 110, 170, 678, 1472, 1717, 1879, 2063
HpaII	CCGG	4 cut(s)	380, 628, 1411, 1456
HphI	GGTGA	7 cut(s)	41, 97, 610, 836, 1241, 1820, 1902
Hpy166II	GTNNAC	6 cut(s)	303, 331, 487, 693, 1340, 1452
Hpy188III	TCNNGA	8 cut(s)	14, 33, 126, 278, 353, 461, 1184, 1693
Hpy8I	GTNNAC	6 cut(s)	303, 331, 487, 693, 1340, 1452
Hpy99I	CGWCG	5 cut(s)	98, 124, 127, 455, 539
HpyAV	CCTTC	6 cut(s)	68, 349, 785, 1218, 1608, 1928
HpyCH4IV	ACGT	3 cut(s)	294, 1567, 1689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 1258, 1829
HpyF3I	CTNAG	4 cut(s)	42, 623, 1402, 2079
HpySE526I	ACGT	3 cut(s)	294, 1567, 1689
Hsp92I	GRCGYC	1 cut(s)	1689
KroI	GCCGGC	1 cut(s)	1410
KroNI	GCCGGC	1 cut(s)	1412
Ksp22I	TGATCA	2 cut(s)	1750, 1900
Kzo9I	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
LguI	GCTCTTC	1 cut(s)	1242
LmnI	GCTCC	4 cut(s)	8, 38, 1577, 1973
Lsp1109I	GCAGC	6 cut(s)	392, 730, 1159, 1239, 1621, 1912
LweI	GCATC	4 cut(s)	553, 1646, 1792, 1793
MaeII	ACGT	3 cut(s)	294, 1567, 1689
MaeIII	GTNAC	8 cut(s)	47, 640, 794, 824, 869, 898, 1010, 2039
MalI	GATC	9 cut(s)	28, 492, 858, 989, 1039, 1590, 1752, 1902, 1909
MboI	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
MfeI	CAATTG	1 cut(s)	2054
MflI	RGATCY	1 cut(s)	1588
MhlI	GDGCHC	3 cut(s)	13, 102, 634
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	9 cut(s)	247, 659, 682, 699, 1125, 1528, 1894, 2054, 2116
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	3 cut(s)	53, 179, 1711
Mox20I	TGGCCA	1 cut(s)	908
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	1410
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	1 cut(s)	1128
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	405, 743
MspI	CCGG	4 cut(s)	380, 628, 1411, 1456
MspR9I	CCNGG	3 cut(s)	559, 629, 1456
MunI	CAATTG	1 cut(s)	2054
MvaI	CCWGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	215, 1258, 1829
NaeI	GCCGGC	1 cut(s)	1412
NciI	CCSGG	2 cut(s)	629, 1456
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
NgoMIV	GCCGGC	1 cut(s)	1410
NlaIV	GGNNCC	1 cut(s)	1619
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	47, 824
NruI	TCGCGA	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	935, 1631, 1922
PasI	CCCWGGG	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	375
PciI	ACATGT	1 cut(s)	1918
PciSI	GCTCTTC	1 cut(s)	1242
PcsI	WCGNNNNNNNCGW	5 cut(s)	93, 119, 435, 459, 1564
PdiI	GCCGGC	1 cut(s)	1412
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	6 cut(s)	78, 110, 678, 1472, 1879, 2063
PkrI	GCNGC	9 cut(s)	211, 407, 410, 745, 1021, 1174, 1254, 1636, 1927
Ple19I	CGATCG	1 cut(s)	493
PleI	GAGTC	3 cut(s)	53, 178, 1711
PpsI	GAGTC	3 cut(s)	53, 178, 1711
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	1617
PscI	ACATGT	1 cut(s)	1918
Psp124BI	GAGCTC	2 cut(s)	13, 102
Psp1406I	AACGTT	1 cut(s)	1567
Psp5II	RGGWCCY	1 cut(s)	1617
Psp6I	CCWGG	1 cut(s)	557
PspEI	GGTNACC	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	1219, 1314
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	1619
PspPI	GGNCC	3 cut(s)	1072, 1617, 1846
PspPPI	RGGWCCY	1 cut(s)	1617
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	1588
PvuI	CGATCG	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	405, 743
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	3 cut(s)	293, 605, 1649
RsaNI	GTAC	3 cut(s)	292, 604, 1648
SacI	GAGCTC	2 cut(s)	13, 102
SapI	GCTCTTC	1 cut(s)	1242
SaqAI	TTAA	1 cut(s)	1128
SatI	GCNGC	9 cut(s)	210, 406, 409, 744, 1020, 1173, 1253, 1635, 1926
Sau3AI	GATC	9 cut(s)	26, 490, 856, 987, 1037, 1588, 1750, 1900, 1907
Sau96I	GGNCC	3 cut(s)	1072, 1617, 1846
SchI	GAGTC	3 cut(s)	53, 179, 1711
ScrFI	CCNGG	3 cut(s)	559, 629, 1456
SduI	GDGCHC	3 cut(s)	13, 102, 634
SfaNI	GCATC	4 cut(s)	553, 1646, 1792, 1793
SfcI	CTRYAG	4 cut(s)	174, 829, 1273, 1827
SinI	GGWCC	3 cut(s)	1072, 1617, 1846
SmlI	CTYRAG	5 cut(s)	12, 518, 1256, 1433, 2106
SmoI	CTYRAG	5 cut(s)	12, 518, 1256, 1433, 2106
Sse9I	AATT	9 cut(s)	247, 659, 682, 699, 1125, 1528, 1894, 2054, 2116
SseBI	AGGCCT	1 cut(s)	375
SsiI	CCGC	9 cut(s)	52, 209, 408, 442, 478, 596, 1019, 1070, 2026
SstI	GAGCTC	2 cut(s)	13, 102
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	557, 627, 1454
StyI	CCWWGG	2 cut(s)	903, 991
TaiI	ACGT	3 cut(s)	297, 1570, 1692
TaqI	TCGA	9 cut(s)	81, 87, 113, 125, 399, 429, 537, 1558, 2061
TasI	AATT	9 cut(s)	247, 659, 682, 699, 1125, 1528, 1894, 2054, 2116
TauI	GCSGC	3 cut(s)	212, 411, 1022
TfiI	GAWTC	6 cut(s)	78, 110, 678, 1472, 1879, 2063
Tru1I	TTAA	1 cut(s)	1128
Tru9I	TTAA	1 cut(s)	1128
TscAI	CASTG	3 cut(s)	199, 942, 1249
TseFI	GTSAC	2 cut(s)	47, 824
TseI	GCWGC	6 cut(s)	405, 743, 1172, 1252, 1634, 1925
Tsp45I	GTSAC	2 cut(s)	47, 824
TspGWI	ACGGA	2 cut(s)	649, 659
TspRI	CASTG	3 cut(s)	199, 942, 1249
VpaK11BI	GGWCC	3 cut(s)	1072, 1617, 1846
XagI	CCTNNNNNAGG	1 cut(s)	1433
XceI	RCATGY	3 cut(s)	935, 1631, 1922
XmiI	GTMKAC	3 cut(s)	330, 486, 1451
XmnI	GAANNNNTTC	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	1690
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.