Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Forward (+)

21199337 .. 21202113

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCATGGAGCTGAAAGGAGAAAGTCGTCAGGAGGAGGTGCTCATGATCAGTACGAAGATGAGGGGTCGACGTTTGAGGATGATGATGATTATGAGGAGGAGCATATTAATGATGATTCTAAGAAACAGTGGCTGTGGAAATTAGGGCGTTTTATCGCTTGTACGACTGCCGGCGACTCCACCACTCTTACTACTACTCCTGGCAGTACAAGTACTGGAAGCAGATCATCGTCTGCATCTTCATTTCTTGATCGACTCGTTATTCATCCTGAAAACTGGTTGTACGTGGGGTGGACGCATTTCATTCTGCTATGGGCAGTCTATTCGTCCTTCTTCACGCCTTTGGAGTTCGGCTTCTTCCGGGGTCTGCCCCAGAATCTGTTCCTGCTCGACATCGCCGGCCAGTTGGCCTTCCTTGTCGACATCGTTGTACGCTTCTTCGTGGCCTACCGAGACTTTCACTCGCACCGTATTGTCTACAACCGCAACCTCATCGCTCTCCGCTACTTGAAGTCTCGATTTCTCGTTGATTTGCTCGGTTGTCTGCCTTGGGACGCCATCTACAAGGCTTCTGGGAAAGAAGAGGGAGTGAGGTACCTGTTATGGATAAGACTAAGTCGAGCACGTAGAGTAACAGAGTTTTTTGAGAAGTTGGAGAAAGATATAAGGATCAACTACCTTTTTACAAGAATTGCCAAACTTTTTGTTGTGGAACTTTATAGCACACACACGGCTGCCTGCATCTTTTATTACCTTGCTACTACCATGCCTCCGTCACGGGAAGGATACACATGGATTGGAAGTTTGAAGATGGGTGACTATAGCTATTCCCATTTTAGAGAAATTGACCTTTGGAAGCGTTACATTACCTCACTCTATTTCGCCGTTGTTACCATGGCAACCGTTGTGTGGATATGGAGAGATACATGCAGTGAATGTGAGGGAAATGATATTCATCATGATTTATGTGTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

326

Amino Acids

37.89

Weight (kDa)

6.13

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	594
AccI	GTMKAC	3 cut(s)	68, 420, 477
AciI	CCGC	2 cut(s)	484, 502
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	7 cut(s)	53, 163, 208, 214, 284, 432, 596
AfiI	CCNNNNNNNGG	1 cut(s)	909
AgsI	TTSAA	2 cut(s)	511, 808
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	11, 825
AluI	AGCT	2 cut(s)	11, 825
Alw21I	GWGCWC	2 cut(s)	43, 625
Alw26I	GTCTC	2 cut(s)	447, 519
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	2 cut(s)	133, 379
AoxI	GGCC	3 cut(s)	400, 408, 444
ApeKI	GCWGC	1 cut(s)	734
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	827
BanI	GGYRCC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	43, 625
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	2 cut(s)	566, 805
BceAI	ACGGC	2 cut(s)	747, 869
BcgI	CGANNNNNNTGC	4 cut(s)	306, 340, 475, 509
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	779
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	447, 519
BfmI	CTRYAG	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	779
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	201, 362
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	201, 362
BmsI	GCATC	2 cut(s)	245, 750
BpuMI	CCSGG	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	286, 626
BsaBI	GATNNNNATC	1 cut(s)	954
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	361, 548, 894
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 754, 784
Bsc4I	CCNNNNNNNGG	1 cut(s)	909
Bse118I	RCCGGY	2 cut(s)	170, 398
Bse1I	ACTGG	3 cut(s)	220, 281, 403
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	361, 548, 894
BseGI	GGATG	2 cut(s)	85, 265
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	220, 281, 403
BseRI	GAGGAG	3 cut(s)	48, 110, 113
BseXI	GCAGC	1 cut(s)	721
BshFI	GGCC	3 cut(s)	402, 410, 446
BshNI	GGYRCC	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	43, 625
BsiSI	CCGG	3 cut(s)	171, 361, 399
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	909
BsmAI	GTCTC	2 cut(s)	447, 519
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	3 cut(s)	402, 410, 446
Bsp1286I	GDGCHC	2 cut(s)	43, 625
Bsp143I	GATC	4 cut(s)	46, 224, 250, 669
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	2 cut(s)	484, 502
BspANI	GGCC	3 cut(s)	402, 410, 446
BspHI	TCATGA	2 cut(s)	43, 958
BspLI	GGNNCC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	594
BsrFI	RCCGGY	2 cut(s)	170, 398
BsrI	ACTGG	3 cut(s)	220, 281, 403
BssAI	RCCGGY	2 cut(s)	170, 398
BssECI	CCNNGG	3 cut(s)	361, 548, 894
BssMI	GATC	4 cut(s)	46, 224, 250, 669
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	548, 894
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	129, 470, 904
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	1 cut(s)	555
BstBAI	YACGTR	2 cut(s)	286, 626
BstC8I	GCNNGC	3 cut(s)	172, 400, 739
BstDEI	CTNAG	2 cut(s)	120, 614
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	2 cut(s)	85, 265
BstKTI	GATC	4 cut(s)	49, 227, 253, 672
BstMAI	GTCTC	2 cut(s)	447, 519
BstMBI	GATC	4 cut(s)	46, 224, 250, 669
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	2 cut(s)	199, 360
BstSFI	CTRYAG	1 cut(s)	820
BstV1I	GCAGC	1 cut(s)	721
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	402, 410, 446
BtgI	CCRYGG	1 cut(s)	894
BtgZI	GCGATG	2 cut(s)	379, 478
BtsCI	GGATG	2 cut(s)	85, 265
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	2 cut(s)	134, 937
Cac8I	GCNNGC	3 cut(s)	172, 400, 739
CaiI	CAGNNNCTG	2 cut(s)	133, 379
CciI	TCATGA	2 cut(s)	43, 958
Cfr10I	RCCGGY	2 cut(s)	170, 398
CseI	GACGC	2 cut(s)	304, 563
Csp6I	GTAC	7 cut(s)	52, 162, 207, 213, 283, 431, 595
CviAII	CATG	7 cut(s)	5, 44, 766, 792, 895, 927, 959
CviJI	RGCY	9 cut(s)	11, 133, 354, 402, 410, 446, 569, 734, 825
CviKI_1	RGCY	9 cut(s)	11, 133, 354, 402, 410, 446, 569, 734, 825
CviQI	GTAC	7 cut(s)	52, 162, 207, 213, 283, 431, 595
DdeI	CTNAG	2 cut(s)	120, 614
DpnI	GATC	4 cut(s)	48, 226, 252, 671
DpnII	GATC	4 cut(s)	46, 224, 250, 669
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	548, 894
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	548, 894
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	548, 894
FaeI	CATG	7 cut(s)	8, 47, 769, 795, 898, 930, 962
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	7 cut(s)	4, 43, 765, 791, 894, 926, 958
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	3 cut(s)	68, 420, 477
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	2 cut(s)	92, 252
Fsp4HI	GCNGC	1 cut(s)	735
GluI	GCNGC	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	402, 410, 446
HapII	CCGG	3 cut(s)	171, 361, 399
HgaI	GACGC	2 cut(s)	304, 563
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	7 cut(s)	8, 47, 769, 795, 898, 930, 962
HincII	GTYRAC	2 cut(s)	69, 421
HindII	GTYRAC	2 cut(s)	69, 421
HinfI	GANTC	4 cut(s)	116, 176, 255, 376
HpaII	CCGG	3 cut(s)	171, 361, 399
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	4 cut(s)	69, 294, 421, 478
Hpy188III	TCNNGA	6 cut(s)	30, 44, 248, 269, 516, 959
Hpy8I	GTNNAC	4 cut(s)	69, 294, 421, 478
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	340, 421, 776
HpyCH4III	ACNGT	3 cut(s)	129, 470, 904
HpyCH4IV	ACGT	3 cut(s)	71, 285, 625
HpyCH4V	TGCA	4 cut(s)	4, 236, 741, 930
HpyF3I	CTNAG	2 cut(s)	120, 614
HpySE526I	ACGT	3 cut(s)	71, 285, 625
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	7 cut(s)	8, 47, 769, 795, 898, 930, 962
KpnI	GGTACC	1 cut(s)	598
KroI	GCCGGC	2 cut(s)	170, 398
KroNI	GCCGGC	2 cut(s)	172, 400
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	46, 224, 250, 669
LmnI	GCTCC	2 cut(s)	8, 100
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	2 cut(s)	245, 750
MaeII	ACGT	3 cut(s)	71, 285, 625
MaeIII	GTNAC	5 cut(s)	631, 774, 815, 860, 889
MalI	GATC	4 cut(s)	48, 226, 252, 671
MboI	GATC	4 cut(s)	46, 224, 250, 669
MboII	GAAGA	7 cut(s)	68, 231, 325, 349, 430, 593, 820
MhlI	GDGCHC	2 cut(s)	43, 625
MluCI	AATT	3 cut(s)	140, 690, 843
MlyI	GAGTC	2 cut(s)	170, 249
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	2 cut(s)	170, 398
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	171, 361, 399
MspR9I	CCNGG	2 cut(s)	201, 362
MvaI	CCWGG	1 cut(s)	201
NaeI	GCCGGC	2 cut(s)	172, 400
NciI	CCSGG	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	894
NdeII	GATC	4 cut(s)	46, 224, 250, 669
NgoMIV	GCCGGC	2 cut(s)	170, 398
NlaIII	CATG	7 cut(s)	8, 47, 769, 795, 898, 930, 962
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	2 cut(s)	774, 815
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	930
PagI	TCATGA	2 cut(s)	43, 958
PdiI	GCCGGC	2 cut(s)	172, 400
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	116, 376
PflFI	GACNNNGTC	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	736
PleI	GAGTC	2 cut(s)	170, 249
PpsI	GAGTC	2 cut(s)	170, 249
Ppu21I	YACGTR	2 cut(s)	286, 626
PshBI	ATTAAT	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	596
PstNI	CAGNNNCTG	2 cut(s)	133, 379
PsyI	GACNNNGTC	1 cut(s)	615
RsaI	GTAC	7 cut(s)	53, 163, 208, 214, 284, 432, 596
RsaNI	GTAC	7 cut(s)	52, 162, 207, 213, 283, 431, 595
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	2 cut(s)	67, 419
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	4 cut(s)	46, 224, 250, 669
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	2 cut(s)	170, 249
ScrFI	CCNGG	2 cut(s)	201, 362
SduI	GDGCHC	2 cut(s)	43, 625
SfaNI	GCATC	2 cut(s)	245, 750
SfcI	CTRYAG	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	140, 690, 843
SsiI	CCGC	2 cut(s)	484, 502
StyD4I	CCNGG	2 cut(s)	199, 360
StyI	CCWWGG	2 cut(s)	548, 894
TaaI	ACNGT	3 cut(s)	129, 470, 904
TaiI	ACGT	3 cut(s)	74, 288, 628
TaqI	TCGA	6 cut(s)	68, 253, 390, 420, 517, 619
TasI	AATT	3 cut(s)	140, 690, 843
TatI	WGTACW	2 cut(s)	206, 212
TfiI	GAWTC	2 cut(s)	116, 376
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	134, 937
TseFI	GTSAC	2 cut(s)	774, 815
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	2 cut(s)	774, 815
TspDTI	ATGAA	4 cut(s)	231, 254, 292, 944
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	2 cut(s)	134, 937
Tth111I	GACNNNGTC	1 cut(s)	615
VspI	ATTAAT	1 cut(s)	108
XceI	RCATGY	1 cut(s)	930
XmiI	GTMKAC	3 cut(s)	68, 420, 477
XmnI	GAANNNNTTC	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.