Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

677797 .. 682776

Gene Structure 4980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG010600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGCATGGAGCTCAAGAAAGGCGAAGATCGTCTGGAGGAGCTGACGATCACCGCCGCGACTCCTCTGACGATGAAGGATTCGATGTCGAGGACGACGAGCTCATCACCGATTCGAGGTCGTCGTCGAGACAGTTCTGGTGGAAAAGGCGTTTCTATTTGAAGAGAAGTGAGTCCAGCACTAATGCCACCACTGTTGGGACTACTGCGGCCAATGCAAGCAGAACATCATCATCATCGGCTTCTAATTCGCTTTTCAATAGAATGGTCATTCATCCCGATAACTGGTGGTACGTGGGGTGGACGCATTTCATTCTGTTATGGGCAGTCTACTCCTCCTTCTTCACACCTCTGGAGTTCGGCTTCTTCAGAGGTCTGCCGGAGAACCTGTTCATGCTCGACAGCTGCGGCCAGATAGCCTTTCTCATCGATATCATCGTCCGCTTCTTCGTCGCCTATCGCGACTTCCACTCCCACCGCATTGTCTACGATCGCCACCTCATCGCTCTCCGATACCTCAAGTCCCGTTTCCTCGTCGATTTTCTAGGCTGTCTTCCCTGGGATGCCATCTACAAGGCTTCTGGGAGAGAAGAGGCGGTGAGGTACTTATTGTGGATACGGCTAAGCCGGGCACGGAGAGTAACGGAGTTTTTTGAGAAATTGGAGAAAGATATCAGAATCAATTACCTGTTTACAAGAATTGCCAAGCTATTTGTTGTTGAACTTTATAGCACACACACAGCTGCTTGCATATTTTATTATCTGGCTACTACTATGCCTTCATCACAGGAAGGTTACACATGGATTGGGAGTTTGAAGATGGGTGACTATAGCTATGCGCATTTCAGGGAGATTGATCTTTGGAAGCGTTACATAACTTCGCTCTATTTTGCAGTTGTTACCATGGCCACCGTCGGTTATGGAGAGATACATGCAGTGAATGTGAGGGAGATGATATTCATCATGTTTTATGTGTCTTTTGATATGATTCTCGGTGCTTATCTGCTTGGTAACATTGCGGCATTGATAGTGAAAGGATCAAAAACAGAGAAGTTTAGGGACAAGATGGCGGACCTTATCAAATACATGAATAGAAACCGTATTGATAGAGGGATAAGTAAGGAAATTAAAAACCATTTGAGATTACAGTATGACCGTAGCTACACCGAAGCTGCTGTTCTTCAGGATATTCCTGCCTCTATTCGCAGTAAGGCAACCAGAATTCATGAGGAGTTTTTCCTTCCAGCAGAAGTGATTATAGAGCAGGGGGATGTAGTAGATCACCTATATATAGTATGCCATGGTGAACTGGAAAAGCTGGGAAGGGGTGAAGATGATGACAGTGACGAGCTCCTTGAGCGTTTGCAAACCTATAGCTCATTTGGAGAGGTTTCTTTTCTTTGCAACACTCCCCAGCCGTATGCTGTTCGGGTTTGTCAACTGTGTAGGGTCTTACGACTTGATAGACAGTCCTTTAGAGAAATACTGGAGATATATTTCTTAGATGGCCGGCTTATCTTGGATAACCTGCTTGAGGGAAAAGACTTGTATACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATATATCGGAAAGCATGAAATGGAGTTAGTTATGAAAGTAAATTGTGCTGCCTATGATGGAGATTTTTATCGAGTAAAACGTTTGATTGGAGCTGGTGTAGATCCAAACAAGGTGGATTATGCTGGAAGGTCCCCTTTGCATGTTGCTGCATCAAAAGGGTACGAGGATATTGCTCGTTTTCTTATTGAAAAAGGGGGAGACGTCAAGATGCCAGATAAGTTTGGGAACACTCCATTGCTTGAAGCCATAAAAAATGGGCATGATCAAGTTGCTTCTTTACTTGTTCAGGCAGGGGCATCACTTACTATTGAAGATGCTGGTGATTTTCTCTGTGCTACTGTAGCAAAGAGGGATTTGGACCTCGTGAAAAGGCTTTTAGCCAATGACATGAATCCAAATGCGAAAAATTATGATCAGAGATCACCACTACATGTAGCTGCTTCAGAAGGGTTATATCCAATGGCAGAGTTCCTATTAGAAGCAGGAGCAAGTGTTCTATCAAAGGACAGATGGGGGAAAACTCCGCTTGATGAAGCCCGCATAGGTGGAAGTAACAAGCTAATGCAATTGCTCGAATCTACAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAAGTAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

738

Amino Acids

84.59

Weight (kDa)

6.26

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	100 - 347	1.2e-25	Ion transport protein
Ion_trans_2	PF07885	287 - 343	5.4e-08	Ion channel
cNMP_binding	PF00027	411 - 496	3.5e-16	Cyclic nucleotide-binding domain
Ank_4	PF13637	543 - 590	5e-10	Ankyrin repeats (many copies)
Ank_2	PF12796	544 - 633	9e-17	Ankyrin repeats (3 copies)
Ank_5	PF13857	560 - 607	2.8e-08	Ankyrin repeats (many copies)
Ank	PF00023	570 - 601	5e-06	Ankyrin repeat
Ank_4	PF13637	574 - 622	2.7e-08	Ankyrin repeats (many copies)
Ank_2	PF12796	642 - 719	2.6e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	643 - 687	2.5e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	653 - 707	4.4e-10	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1788
Acc16I	TGCGCA	1 cut(s)	837
Acc36I	ACCTGC	1 cut(s)	1533
AccI	GTMKAC	3 cut(s)	327, 483, 1547
AccII	CGCG	2 cut(s)	57, 459
AclI	AACGTT	1 cut(s)	1663
AclWI	GGATC	2 cut(s)	1042, 1679
AcoI	YGGCCR	4 cut(s)	207, 406, 903, 1504
AcsI	RAATTY	1 cut(s)	1218
AcuI	CTGAAG	3 cut(s)	349, 1163, 2010
AcyI	GRCGYC	1 cut(s)	1785
AfaI	GTAC	3 cut(s)	290, 602, 1745
AfiI	CCNNNNNNNGG	4 cut(s)	114, 195, 282, 1531
AflIII	ACRYGT	1 cut(s)	2014
AgsI	TTSAA	7 cut(s)	160, 256, 719, 814, 1772, 1826, 1895
AjnI	CCWGG	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	2 cut(s)	1547, 1579
AloI	GAACNNNNNNTCC	4 cut(s)	371, 403, 2061, 2093
Alw21I	GWGCWC	3 cut(s)	13, 102, 1350
Alw26I	GTCTC	2 cut(s)	121, 1776
AlwI	GGATC	2 cut(s)	1042, 1679
AoxI	GGCC	4 cut(s)	207, 406, 903, 1504
ApeKI	GCWGC	6 cut(s)	402, 740, 1169, 1631, 1730, 2021
ApoI	RAATTY	1 cut(s)	1218
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	3 cut(s)	1069, 1713, 1942
AsuC2I	CCSGG	2 cut(s)	626, 1552
AsuHPI	GGTGA	9 cut(s)	41, 97, 607, 833, 1271, 1313, 1337, 1916, 1998
AvaII	GGWCC	3 cut(s)	1069, 1713, 1942
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	905
BanII	GRGCYC	3 cut(s)	13, 102, 1350
BauI	CACGAG	1 cut(s)	1946
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	3 cut(s)	13, 102, 1350
BbvI	GCAGC	6 cut(s)	389, 727, 1156, 1618, 1717, 2008
BccI	CCATC	7 cut(s)	572, 811, 1057, 1496, 1634, 2088, 2189
BceAI	ACGGC	2 cut(s)	632, 1399
BcgI	CGANNNNNNTGC	2 cut(s)	1736, 1770
BciT130I	CCWGG	1 cut(s)	556
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	2 cut(s)	1846, 1996
BcnI	CCSGG	2 cut(s)	626, 1552
BcoDI	GTCTC	2 cut(s)	121, 1776
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	3 cut(s)	826, 1369, 1923
BfuAI	ACCTGC	1 cut(s)	1533
BfuI	GTATCC	1 cut(s)	606
BlpI	GCTNAGC	1 cut(s)	620
Bme1390I	CCNGG	3 cut(s)	556, 626, 1552
Bme18I	GGWCC	3 cut(s)	1069, 1713, 1942
BmgT120I	GGNCC	3 cut(s)	1069, 1713, 1942
BmiI	GGNNCC	1 cut(s)	1715
BmrFI	CCNGG	3 cut(s)	556, 626, 1552
BmsI	GCATC	5 cut(s)	550, 1742, 1782, 1888, 1889
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	3 cut(s)	54, 371, 1505
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	4 cut(s)	500, 1373, 1550, 2187
BpuMI	CCSGG	2 cut(s)	626, 1552
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	2 cut(s)	956, 1650
BsaHI	GRCGYC	1 cut(s)	1785
BsaJI	CCNNGG	4 cut(s)	554, 555, 900, 1297
BsaXI	ACNNNNNCTCC	8 cut(s)	371, 401, 452, 482, 1665, 1695, 2061, 2091
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 195, 282, 1531
Bse118I	RCCGGY	1 cut(s)	1506
Bse1I	ACTGG	3 cut(s)	287, 1311, 1488
Bse3DI	GCAATG	2 cut(s)	1011, 1817
Bse8I	GATNNNNATC	2 cut(s)	956, 1650
BseBI	CCWGG	1 cut(s)	556
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	554, 555, 900, 1297
BseGI	GGATG	3 cut(s)	271, 565, 1273
BseJI	GATNNNNATC	2 cut(s)	956, 1650
BseLI	CCNNNNNNNGG	4 cut(s)	114, 195, 282, 1531
BseMI	GCAATG	2 cut(s)	1011, 1817
BseMII	CTCAG	1 cut(s)	2189
BseNI	ACTGG	3 cut(s)	287, 1311, 1488
BseRI	GAGGAG	4 cut(s)	51, 52, 322, 1241
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	6 cut(s)	389, 727, 1156, 1618, 1717, 2008
BseYI	CCCAGC	2 cut(s)	1315, 1410
Bsh1236I	CGCG	2 cut(s)	57, 459
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	4 cut(s)	209, 408, 905, 1506
BshVI	ATCGAT	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	13, 102, 1350
BsiSI	CCGG	4 cut(s)	377, 625, 1507, 1552
BslFI	GGGAC	4 cut(s)	211, 505, 1070, 1699
BslI	CCNNNNNNNGG	4 cut(s)	114, 195, 282, 1531
BsmAI	GTCTC	2 cut(s)	121, 1776
BsmBI	CGTCTC	1 cut(s)	1776
BsmFI	GGGAC	4 cut(s)	211, 505, 1070, 1699
BsnI	GGCC	4 cut(s)	209, 408, 905, 1506
Bsp1286I	GDGCHC	4 cut(s)	13, 102, 631, 1350
Bsp1720I	GCTNAGC	1 cut(s)	620
Bsp19I	CCATGG	2 cut(s)	900, 1297
Bsp68I	TCGCGA	1 cut(s)	459
BspANI	GGCC	4 cut(s)	209, 408, 905, 1506
BspCNI	CTCAG	1 cut(s)	2188
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	57, 459
BspHI	TCATGA	1 cut(s)	1222
BspLI	GGNNCC	1 cut(s)	1715
BspMI	ACCTGC	1 cut(s)	1533
BspPI	GGATC	2 cut(s)	1042, 1679
BsrDI	GCAATG	2 cut(s)	1011, 1817
BsrFI	RCCGGY	1 cut(s)	1506
BsrI	ACTGG	3 cut(s)	287, 1311, 1488
BssAI	RCCGGY	1 cut(s)	1506
BssECI	CCNNGG	4 cut(s)	554, 555, 900, 1297
BssNAI	GTATAC	1 cut(s)	1548
BssNI	GRCGYC	1 cut(s)	1785
BssSI	CACGAG	1 cut(s)	1946
BssT1I	CCWWGG	2 cut(s)	900, 1297
Bst1107I	GTATAC	1 cut(s)	1548
Bst2BI	CACGAG	1 cut(s)	1946
Bst2UI	CCWGG	1 cut(s)	556
Bst6I	CTCTTC	2 cut(s)	155, 582
BstACI	GRCGYC	1 cut(s)	1785
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	217, 745, 1508, 2122
BstDEI	CTNAG	3 cut(s)	620, 1498, 2175
BstDSI	CCRYGG	2 cut(s)	900, 1297
BstENI	CCTNNNNNAGG	1 cut(s)	1529
BstF5I	GGATG	3 cut(s)	271, 565, 1273
BstFNI	CGCG	2 cut(s)	57, 459
BstHHI	GCGC	1 cut(s)	838
BstMAI	GTCTC	2 cut(s)	121, 1776
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 1354, 1925
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	3 cut(s)	932, 1727, 2018
BstSCI	CCNGG	3 cut(s)	554, 624, 1550
BstSFI	CTRYAG	3 cut(s)	826, 1369, 1923
BstSLI	GKGCMC	1 cut(s)	631
BstUI	CGCG	2 cut(s)	57, 459
BstV1I	GCAGC	6 cut(s)	389, 727, 1156, 1618, 1717, 2008
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	1684
BstYI	RGATCY	1 cut(s)	1684
BstZ17I	GTATAC	1 cut(s)	1548
Bsu15I	ATCGAT	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	4 cut(s)	209, 408, 905, 1506
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	900, 1297
BtgZI	GCGATG	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	271, 565, 1273
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	3 cut(s)	189, 939, 1345
BtuMI	TCGCGA	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	1533
Cac8I	GCNNGC	4 cut(s)	217, 745, 1508, 2122
CciI	TCATGA	1 cut(s)	1222
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	1506
Cfr13I	GGNCC	3 cut(s)	1069, 1713, 1942
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	289, 601, 1744
CspCI	CAANNNNNGTGG	4 cut(s)	175, 210, 1677, 1712
CviQI	GTAC	3 cut(s)	289, 601, 1744
DdeI	CTNAG	3 cut(s)	620, 1498, 2175
EaeI	YGGCCR	4 cut(s)	207, 406, 903, 1504
Eam1104I	CTCTTC	2 cut(s)	155, 582
EarI	CTCTTC	2 cut(s)	155, 582
EciI	GGCGGA	1 cut(s)	1082
Ecl136II	GAGCTC	3 cut(s)	11, 100, 1348
Eco130I	CCWWGG	2 cut(s)	900, 1297
Eco24I	GRGCYC	3 cut(s)	13, 102, 1350
Eco32I	GATATC	3 cut(s)	430, 670, 1576
Eco47I	GGWCC	3 cut(s)	1069, 1713, 1942
Eco53kI	GAGCTC	3 cut(s)	11, 100, 1348
Eco57I	CTGAAG	3 cut(s)	349, 1163, 2010
EcoICRI	GAGCTC	3 cut(s)	11, 100, 1348
EcoNI	CCTNNNNNAGG	1 cut(s)	1529
EcoO109I	RGGNCCY	1 cut(s)	1713
EcoRI	GAATTC	1 cut(s)	1218
EcoRII	CCWGG	1 cut(s)	554
EcoRV	GATATC	3 cut(s)	430, 670, 1576
EcoT14I	CCWWGG	2 cut(s)	900, 1297
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	13, 102, 1350
ErhI	CCWWGG	2 cut(s)	900, 1297
Esp3I	CGTCTC	1 cut(s)	1776
FalI	AAGNNNNNCTT	2 cut(s)	1702, 1734
FaqI	GGGAC	4 cut(s)	211, 505, 1070, 1699
FauI	CCCGC	1 cut(s)	2129
FbaI	TGATCA	2 cut(s)	1846, 1996
FblI	GTMKAC	3 cut(s)	327, 483, 1547
FokI	GGATG	3 cut(s)	258, 572, 1280
FriOI	GRGCYC	3 cut(s)	13, 102, 1350
FspAI	RTGCGCAY	1 cut(s)	837
FspBI	CTAG	1 cut(s)	542
FspI	TGCGCA	1 cut(s)	837
GlaI	GCGC	1 cut(s)	837
GsaI	CCCAGC	2 cut(s)	1319, 1414
GsuI	CTGGAG	3 cut(s)	54, 371, 1505
HaeIII	GGCC	4 cut(s)	209, 408, 905, 1506
HapII	CCGG	4 cut(s)	377, 625, 1507, 1552
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	838
Hin1I	GRCGYC	1 cut(s)	1785
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	1436
HindII	GTYRAC	1 cut(s)	1436
HindIII	AAGCTT	1 cut(s)	1559
HinfI	GANTC	9 cut(s)	59, 78, 110, 170, 675, 985, 1568, 1975, 2159
HpaII	CCGG	4 cut(s)	377, 625, 1507, 1552
HphI	GGTGA	9 cut(s)	41, 97, 607, 833, 1271, 1313, 1337, 1916, 1998
Hpy166II	GTNNAC	7 cut(s)	300, 328, 484, 690, 1304, 1436, 1548
Hpy8I	GTNNAC	7 cut(s)	300, 328, 484, 690, 1304, 1436, 1548
Hpy99I	CGWCG	6 cut(s)	98, 124, 127, 452, 536, 914
HpyAV	CCTTC	8 cut(s)	68, 346, 782, 786, 1247, 1314, 1704, 2024
HpyCH4IV	ACGT	3 cut(s)	291, 1663, 1785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 1354, 1925
HpyF3I	CTNAG	3 cut(s)	620, 1498, 2175
HpySE526I	ACGT	3 cut(s)	291, 1663, 1785
Hsp92I	GRCGYC	1 cut(s)	1785
HspAI	GCGC	1 cut(s)	836
KroI	GCCGGC	1 cut(s)	1506
KroNI	GCCGGC	1 cut(s)	1508
Ksp22I	TGATCA	2 cut(s)	1846, 1996
LmnI	GCTCC	5 cut(s)	8, 38, 1353, 1673, 2069
Lsp1109I	GCAGC	6 cut(s)	389, 727, 1156, 1618, 1717, 2008
LweI	GCATC	5 cut(s)	550, 1742, 1782, 1888, 1889
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	3 cut(s)	291, 1663, 1785
MaeIII	GTNAC	8 cut(s)	637, 791, 821, 866, 895, 1007, 1340, 2135
MfeI	CAATTG	1 cut(s)	2150
MflI	RGATCY	1 cut(s)	1684
MhlI	GDGCHC	4 cut(s)	13, 102, 631, 1350
MlsI	TGGCCA	1 cut(s)	905
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	2 cut(s)	53, 179
Mox20I	TGGCCA	1 cut(s)	905
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	1506
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	1 cut(s)	1125
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	2 cut(s)	402, 740
MspI	CCGG	4 cut(s)	377, 625, 1507, 1552
MspR9I	CCNGG	3 cut(s)	556, 626, 1552
MunI	CAATTG	1 cut(s)	2150
MvaI	CCWGG	1 cut(s)	556
MvnI	CGCG	2 cut(s)	57, 459
MwoI	GCNNNNNNNGC	3 cut(s)	212, 1354, 1925
NaeI	GCCGGC	1 cut(s)	1508
NciI	CCSGG	2 cut(s)	626, 1552
NcoI	CCATGG	2 cut(s)	900, 1297
NgoMIV	GCCGGC	1 cut(s)	1506
NlaIV	GGNNCC	1 cut(s)	1715
NmuCI	GTSAC	2 cut(s)	821, 1340
NruI	TCGCGA	1 cut(s)	459
NsbI	TGCGCA	1 cut(s)	837
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	932, 1727, 2018
PagI	TCATGA	1 cut(s)	1222
PasI	CCCWGGG	1 cut(s)	555
PciI	ACATGT	1 cut(s)	2014
PcsI	WCGNNNNNNNCGW	5 cut(s)	93, 119, 432, 456, 1660
PdiI	GCCGGC	1 cut(s)	1508
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	7 cut(s)	78, 110, 675, 985, 1568, 1975, 2159
Ple19I	CGATCG	1 cut(s)	490
PleI	GAGTC	2 cut(s)	53, 178
PpsI	GAGTC	2 cut(s)	53, 178
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	1713
PscI	ACATGT	1 cut(s)	2014
Psp124BI	GAGCTC	3 cut(s)	13, 102, 1350
Psp1406I	AACGTT	1 cut(s)	1663
Psp5II	RGGWCCY	1 cut(s)	1713
Psp6I	CCWGG	1 cut(s)	554
PspFI	CCCAGC	2 cut(s)	1315, 1410
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	1715
PspPI	GGNCC	3 cut(s)	1069, 1713, 1942
PspPPI	RGGWCCY	1 cut(s)	1713
PsuI	RGATCY	1 cut(s)	1684
PvuI	CGATCG	1 cut(s)	490
PvuII	CAGCTG	2 cut(s)	402, 740
RruI	TCGCGA	1 cut(s)	459
RsaI	GTAC	3 cut(s)	290, 602, 1745
RsaNI	GTAC	3 cut(s)	289, 601, 1744
SacI	GAGCTC	3 cut(s)	13, 102, 1350
SaqAI	TTAA	1 cut(s)	1125
Sau96I	GGNCC	3 cut(s)	1069, 1713, 1942
SchI	GAGTC	2 cut(s)	53, 179
ScrFI	CCNGG	3 cut(s)	556, 626, 1552
SduI	GDGCHC	4 cut(s)	13, 102, 631, 1350
SfaNI	GCATC	5 cut(s)	550, 1742, 1782, 1888, 1889
SfcI	CTRYAG	3 cut(s)	826, 1369, 1923
SinI	GGWCC	3 cut(s)	1069, 1713, 1942
SmlI	CTYRAG	5 cut(s)	12, 515, 1352, 1529, 2202
SmoI	CTYRAG	5 cut(s)	12, 515, 1352, 1529, 2202
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	3 cut(s)	13, 102, 1350
StyD4I	CCNGG	3 cut(s)	554, 624, 1550
StyI	CCWWGG	2 cut(s)	900, 1297
TaiI	ACGT	3 cut(s)	294, 1666, 1788
TaqI	TCGA	9 cut(s)	81, 87, 113, 125, 396, 426, 534, 1654, 2157
TauI	GCSGC	4 cut(s)	57, 209, 408, 1019
TfiI	GAWTC	7 cut(s)	78, 110, 675, 985, 1568, 1975, 2159
Tru1I	TTAA	1 cut(s)	1125
Tru9I	TTAA	1 cut(s)	1125
TscAI	CASTG	3 cut(s)	196, 939, 1345
TseFI	GTSAC	2 cut(s)	821, 1340
TseI	GCWGC	6 cut(s)	402, 740, 1169, 1631, 1730, 2021
Tsp45I	GTSAC	2 cut(s)	821, 1340
TspGWI	ACGGA	2 cut(s)	646, 656
TspRI	CASTG	3 cut(s)	196, 939, 1345
VpaK11BI	GGWCC	3 cut(s)	1069, 1713, 1942
XagI	CCTNNNNNAGG	1 cut(s)	1529
XapI	RAATTY	1 cut(s)	1218
XceI	RCATGY	3 cut(s)	932, 1727, 2018
XmiI	GTMKAC	3 cut(s)	327, 483, 1547
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	542
ZraI	GACGTC	1 cut(s)	1786
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.