Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

707770 .. 715074

Gene Structure 7305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGCATGGAGCTCAAGAAAGACGAAGATCGTCAGGAGGAGCTGAGGGTCACCGCCACGACTCCTCTGATGATGAAGGATTCGAGGTCGAGGACGACGAGCTCATCACCGATTCGAGGTCGTTGTCGAGACAGTTCTGGTGGAAAAGGCGTTTCTCTTTGAAGAGAAGTGAGTCTGCAGGCACTAATGCCACCACTGTTGAGACTACTGCGGCCAATGCAAGCAGAACATCATCATCATCGGCTTCTAATTCTCTTTTCAGTAGAATGGTCATTCATCCCGATAACTGGTGGTATGTGGGGTGGACGCATTTCATTCTGTTATGGGCAGTCTACTCCTCCTTCTTCACACCTCTGGAGTTCGGCTTCTTCAGAGGCCTGCCGGAGAACCTGTTCATGCTCGACAGCTGCGGCCAGATAGCCTTTCTCATCGATATCATCGTCCGCTTCTTCGTCGCCTATCGCGACTTCCACTCCCACCGCATTGTCTACGATCGCCACCTCATCGCTCTCCGATACCTCAAGTCTCGTTTCCTCGTCGATTTTCTCGGCTGTCTTCCCTGGGATGCCATCTATAAGGCTTCTGGGAGAGAAGAGGCGGTGAGGTACTTATTGTGGATACGGCTAAGCCGGGCACGGAGAGTAACGGAGTTTTTTGAGAAATTGGAGAAAGATATCAGAATCAATTACCTGTTTACAAGAATTGCCAAGCTATTTGTTGTTGAACTTTATAGCACACACACAGCTGCTTGCATATTTTATTATCTGGCTACTACCATGCCTCCAACACAGGAAGGTTACACATGGATTGGGAGTTTGAAGATGGGTGACTATAGCTATGCACATTTCAGGGAGATTGATCTTTGGAAGCGTTACATAACTTCGCTCTATTTTGCAGTTGTTACCATGGCCACCGTTGGTTATGGAGAGATACATGCAGTGAATGTGAGGGAGATGATATTCATCATGTTTTATGTGTCTTTTGATATGATTCTTGGTGCTTATCTGCTTGGTAACATTGCGGCATTGATAGTGAAAGGATCAAAAACAGAGAAGTTTAGGGACAAGATGGCGGACCTTATCAAATACATGAATAGAAACCGTATTGATAGAGGGATAAGTAAGGAAATTAAAAACCATTTGAGATTACAGTATGACCGTAGCTACACCGAAGCTGCTGTTCTTCAGGATATCCCCGCCTCTATTCGCAGTAAGATTTCACAGAAATTGTATGAGCCATACATCAAAGAAGTTCATCTTTTTAAAGGGTGCTCTACGGGATTCATAAAACAGATAGCAACCAGAATTCATGAGGAGTTTTTCCTTCCAGCAGAAGTGATTATAGAGCAGGGGGATGTAGTAGATCACCTATATATAGTATGCCATGGTGAACTGGAAAGGCTGGGAAGGGGTGAAGATGACGACAGTGAAGAGCTGCTTGAGCGTTTGCAAACCTATAGCTCATTTGGAGAGGTTTCTTTTCTTTGCAACACTCCCCAGCCGTATGCTGTTCGGGTTTGTCAACTGTGTAGGGTCTTACGACTTGATAGACAGTCCTTTAGAGAAATACTGGAGATATATTTCTTAGATGGCCGGCTTATCTTGGATAACCTGCTTGAGGGAAAAGACTTGTATACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATATATCGGAAAGCATGAAATGGAGTTAGTTATGAAAGTAAATTGTGCTGTCTATGATGGAGATTTTTATCGAGTAAAACGTTTGATTGGAGCTGGTGTAGATCCAAACAAGGTGGATTATGCTGGAAGGTCCCCTTTGCATGTTGCTGCATCAAAAGGGTACGAGGATATTGCTCGTTTTCTTATTGAAAAAGGGGGAGACGTCAAGATGTCAGATAAGTTTGGGAAGACTCCGTTGCTTGAAGCCATAAAAAATGGGCATGATCAAGTTGCTTCTTTACTTGTTCAGGCAGGGGCATCACTTACTATTGAAGATGCTGGTGATTTTCTCTGTGCTACTGTAGCAAAGAGGGATTTGGACCTCGTAAAAAGGCTTTTAGCCAATGACATGAATCCAAATGCGAAAAATTATGATCAGAGATCACCACTACATGTAGCTGCTTCAGAAGGGTTATATCCAATGGCAGAGTTCCTATTAGAAGCAGGAGCAAGTGTTCTATCAAAGGACAGATGGGGGAAAACTCCACTTGATGAAGCCCGCATAGGTGGAAGTAACAAGCTAATGCAATTGCTCGAATCTACAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAAAACGTGCAACCTCGATCTCCTCCGACCTCGATCGCTGCCCAGAACGGTCCGATATGCCTCTGGTCTCCCTCCTACAAGCCACGCACCACTGTCACTACCTGGAAGCTGCTGCTGCATCGACGTCCTCACTTTAGCGACAGTGCGGACGTCCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

815

Amino Acids

93.4

Weight (kDa)

7.32

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	101 - 348	1.4e-25	Ion transport protein
Ion_trans_2	PF07885	288 - 344	3.7e-08	Ion channel
cNMP_binding	PF00027	439 - 524	1.3e-16	Cyclic nucleotide-binding domain
Ank_4	PF13637	571 - 618	1.8e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	572 - 661	1.6e-16	Ankyrin repeats (3 copies)
Ank_5	PF13857	588 - 635	3.7e-08	Ankyrin repeats (many copies)
Ank	PF00023	598 - 628	6.8e-06	Ankyrin repeat
Ank_4	PF13637	602 - 650	1.4e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	670 - 747	3e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	671 - 715	2.9e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	681 - 735	5e-10	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	1872, 2413, 2439
Acc36I	ACCTGC	1 cut(s)	1617
AccI	GTMKAC	3 cut(s)	330, 486, 1631
AccII	CGCG	1 cut(s)	462
AclI	AACGTT	1 cut(s)	1747
AclWI	GGATC	2 cut(s)	1045, 1763
AcoI	YGGCCR	4 cut(s)	210, 409, 906, 1588
AcsI	RAATTY	1 cut(s)	1302
AcuI	CTGAAG	3 cut(s)	352, 1166, 2094
AcyI	GRCGYC	3 cut(s)	1869, 2410, 2436
AfaI	GTAC	2 cut(s)	605, 1829
AfiI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
AflIII	ACRYGT	1 cut(s)	2098
AgsI	TTSAA	6 cut(s)	160, 722, 817, 1856, 1910, 1979
AjnI	CCWGG	2 cut(s)	557, 2387
AjuI	GAANNNNNNNTTGG	2 cut(s)	1631, 1663
AloI	GAACNNNNNNTCC	4 cut(s)	374, 406, 2145, 2177
Alw21I	GWGCWC	3 cut(s)	13, 102, 1271
Alw26I	GTCTC	5 cut(s)	121, 194, 528, 1860, 2358
AlwI	GGATC	2 cut(s)	1045, 1763
AoxI	GGCC	5 cut(s)	210, 373, 409, 906, 1588
ApoI	RAATTY	1 cut(s)	1302
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	4 cut(s)	1072, 1797, 2026, 2336
AsuC2I	CCSGG	2 cut(s)	629, 1636
AsuHPI	GGTGA	9 cut(s)	41, 97, 610, 836, 1355, 1397, 1421, 2000, 2082
AvaII	GGWCC	4 cut(s)	1072, 1797, 2026, 2336
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	13, 102
BbsI	GAAGAC	2 cut(s)	545, 1901
Bbv12I	GWGCWC	3 cut(s)	13, 102, 1271
BbvCI	CCTCAGC	1 cut(s)	42
BccI	CCATC	7 cut(s)	575, 814, 1060, 1580, 1718, 2172, 2273
BceAI	ACGGC	2 cut(s)	635, 1483
BcgI	CGANNNNNNTGC	2 cut(s)	1820, 1854
BciT130I	CCWGG	2 cut(s)	559, 2389
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	2 cut(s)	1930, 2080
BcnI	CCSGG	2 cut(s)	629, 1636
BcoDI	GTCTC	5 cut(s)	121, 194, 528, 1860, 2358
BfmI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
BfuAI	ACCTGC	1 cut(s)	1617
BfuI	GTATCC	1 cut(s)	609
BlpI	GCTNAGC	1 cut(s)	623
Bme1390I	CCNGG	4 cut(s)	559, 629, 1636, 2389
Bme18I	GGWCC	4 cut(s)	1072, 1797, 2026, 2336
BmgT120I	GGNCC	4 cut(s)	1072, 1797, 2026, 2336
BmiI	GGNNCC	1 cut(s)	1799
BmrFI	CCNGG	4 cut(s)	559, 629, 1636, 2389
BmsI	GCATC	5 cut(s)	553, 1826, 1972, 1973, 2413
BpiI	GAAGAC	2 cut(s)	545, 1901
BpmI	CTGGAG	2 cut(s)	374, 1589
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	3 cut(s)	503, 1457, 1634
BpuMI	CCSGG	2 cut(s)	629, 1636
Bsa29I	ATCGAT	1 cut(s)	429
BsaBI	GATNNNNATC	2 cut(s)	959, 1734
BsaHI	GRCGYC	3 cut(s)	1869, 2410, 2436
BsaI	GGTCTC	1 cut(s)	2358
BsaJI	CCNNGG	4 cut(s)	557, 558, 903, 1381
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
Bse118I	RCCGGY	1 cut(s)	1590
Bse1I	ACTGG	3 cut(s)	290, 1395, 1572
Bse3DI	GCAATG	1 cut(s)	1014
Bse8I	GATNNNNATC	2 cut(s)	959, 1734
BseBI	CCWGG	2 cut(s)	559, 2389
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	557, 558, 903, 1381
BseGI	GGATG	3 cut(s)	274, 568, 1357
BseJI	GATNNNNATC	2 cut(s)	959, 1734
BseLI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	2 cut(s)	33, 2273
BseNI	ACTGG	3 cut(s)	290, 1395, 1572
BseRI	GAGGAG	5 cut(s)	51, 52, 325, 1325, 2298
BseSI	GKGCMC	1 cut(s)	634
BseYI	CCCAGC	2 cut(s)	1399, 1494
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	2 cut(s)	493, 2322
BshFI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	2 cut(s)	493, 2322
BsiHKAI	GWGCWC	3 cut(s)	13, 102, 1271
BsiSI	CCGG	5 cut(s)	380, 628, 1591, 1636, 2440
BslFI	GGGAC	2 cut(s)	1073, 1783
BslI	CCNNNNNNNGG	3 cut(s)	114, 285, 1615
BsmAI	GTCTC	5 cut(s)	121, 194, 528, 1860, 2358
BsmBI	CGTCTC	1 cut(s)	1860
BsmFI	GGGAC	2 cut(s)	1073, 1783
BsnI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
Bso31I	GGTCTC	1 cut(s)	2358
Bsp1286I	GDGCHC	4 cut(s)	13, 102, 634, 1271
Bsp1720I	GCTNAGC	1 cut(s)	623
Bsp19I	CCATGG	2 cut(s)	903, 1381
Bsp68I	TCGCGA	1 cut(s)	462
BspANI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BspCNI	CTCAG	2 cut(s)	34, 2272
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	1306
BspLI	GGNNCC	1 cut(s)	1799
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	1617
BspPI	GGATC	2 cut(s)	1045, 1763
BspQI	GCTCTTC	1 cut(s)	1422
BspTNI	GGTCTC	1 cut(s)	2358
BsrDI	GCAATG	1 cut(s)	1014
BsrFI	RCCGGY	1 cut(s)	1590
BsrI	ACTGG	3 cut(s)	290, 1395, 1572
BssAI	RCCGGY	1 cut(s)	1590
BssECI	CCNNGG	4 cut(s)	557, 558, 903, 1381
BssNAI	GTATAC	1 cut(s)	1632
BssNI	GRCGYC	3 cut(s)	1869, 2410, 2436
BssT1I	CCWWGG	2 cut(s)	903, 1381
Bst1107I	GTATAC	1 cut(s)	1632
Bst2UI	CCWGG	2 cut(s)	559, 2389
Bst6I	CTCTTC	3 cut(s)	155, 585, 1422
BstACI	GRCGYC	3 cut(s)	1869, 2410, 2436
BstC8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1592, 2206
BstDEI	CTNAG	4 cut(s)	42, 623, 1582, 2259
BstDSI	CCRYGG	2 cut(s)	903, 1381
BstEII	GGTNACC	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	1613
BstF5I	GGATG	3 cut(s)	274, 568, 1357
BstFNI	CGCG	1 cut(s)	462
BstMAI	GTCTC	5 cut(s)	121, 194, 528, 1860, 2358
BstMCI	CGRYCG	2 cut(s)	493, 2322
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 1438, 2009, 2401
BstNI	CCWGG	2 cut(s)	559, 2389
BstNSI	RCATGY	3 cut(s)	935, 1811, 2102
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	4 cut(s)	557, 627, 1634, 2387
BstSFI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	545, 1901
BstX2I	RGATCY	1 cut(s)	1768
BstYI	RGATCY	1 cut(s)	1768
BstZ17I	GTATAC	1 cut(s)	1632
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	212, 375, 411, 908, 1590
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	903, 1381
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	274, 568, 1357
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	5 cut(s)	192, 942, 1429, 2376, 2434
BtuMI	TCGCGA	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	1617
Cac8I	GCNNGC	6 cut(s)	178, 220, 377, 748, 1592, 2206
CciI	TCATGA	1 cut(s)	1306
Cfr10I	RCCGGY	1 cut(s)	1590
Cfr13I	GGNCC	4 cut(s)	1072, 1797, 2026, 2336
ClaI	ATCGAT	1 cut(s)	429
CpoI	CGGWCCG	1 cut(s)	2336
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	604, 1828
CspCI	CAANNNNNGTGG	4 cut(s)	178, 213, 1761, 1796
CspI	CGGWCCG	1 cut(s)	2336
CviQI	GTAC	2 cut(s)	604, 1828
DdeI	CTNAG	4 cut(s)	42, 623, 1582, 2259
DraI	TTTAAA	1 cut(s)	1261
EaeI	YGGCCR	4 cut(s)	210, 409, 906, 1588
Eam1104I	CTCTTC	3 cut(s)	155, 585, 1422
EarI	CTCTTC	3 cut(s)	155, 585, 1422
EciI	GGCGGA	1 cut(s)	1085
Ecl136II	GAGCTC	2 cut(s)	11, 100
Eco130I	CCWWGG	2 cut(s)	903, 1381
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	13, 102
Eco31I	GGTCTC	1 cut(s)	2358
Eco32I	GATATC	4 cut(s)	433, 673, 1189, 1660
Eco47I	GGWCC	4 cut(s)	1072, 1797, 2026, 2336
Eco53kI	GAGCTC	2 cut(s)	11, 100
Eco57I	CTGAAG	3 cut(s)	352, 1166, 2094
Eco91I	GGTNACC	1 cut(s)	47
EcoICRI	GAGCTC	2 cut(s)	11, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	1613
EcoO109I	RGGNCCY	1 cut(s)	1797
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	1302
EcoRII	CCWGG	2 cut(s)	557, 2387
EcoRV	GATATC	4 cut(s)	433, 673, 1189, 1660
EcoT14I	CCWWGG	2 cut(s)	903, 1381
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	13, 102
ErhI	CCWWGG	2 cut(s)	903, 1381
Esp3I	CGTCTC	1 cut(s)	1860
FalI	AAGNNNNNCTT	6 cut(s)	1239, 1271, 1419, 1451, 1786, 1818
FaqI	GGGAC	2 cut(s)	1073, 1783
FauI	CCCGC	2 cut(s)	1201, 2213
FbaI	TGATCA	2 cut(s)	1930, 2080
FblI	GTMKAC	3 cut(s)	330, 486, 1631
FokI	GGATG	3 cut(s)	261, 575, 1364
FriOI	GRGCYC	2 cut(s)	13, 102
GsaI	CCCAGC	2 cut(s)	1403, 1498
GsuI	CTGGAG	2 cut(s)	374, 1589
HaeIII	GGCC	5 cut(s)	212, 375, 411, 908, 1590
HapII	CCGG	5 cut(s)	380, 628, 1591, 1636, 2440
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	3 cut(s)	1869, 2410, 2436
HincII	GTYRAC	1 cut(s)	1520
HindII	GTYRAC	1 cut(s)	1520
HindIII	AAGCTT	1 cut(s)	1643
HpaII	CCGG	5 cut(s)	380, 628, 1591, 1636, 2440
HphI	GGTGA	9 cut(s)	41, 97, 610, 836, 1355, 1397, 1421, 2000, 2082
Hpy166II	GTNNAC	7 cut(s)	303, 331, 487, 693, 1388, 1520, 1632
Hpy188III	TCNNGA	9 cut(s)	14, 33, 126, 278, 353, 461, 1184, 1307, 1873
Hpy8I	GTNNAC	7 cut(s)	303, 331, 487, 693, 1388, 1520, 1632
Hpy99I	CGWCG	4 cut(s)	98, 455, 539, 2412
HpyAV	CCTTC	7 cut(s)	68, 349, 785, 1331, 1398, 1788, 2108
HpyCH4IV	ACGT	5 cut(s)	1747, 1869, 2292, 2410, 2436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 1438, 2009, 2401
HpyF3I	CTNAG	4 cut(s)	42, 623, 1582, 2259
HpySE526I	ACGT	5 cut(s)	1747, 1869, 2292, 2410, 2436
Hsp92I	GRCGYC	3 cut(s)	1869, 2410, 2436
KroI	GCCGGC	1 cut(s)	1590
KroNI	GCCGGC	1 cut(s)	1592
Ksp22I	TGATCA	2 cut(s)	1930, 2080
LguI	GCTCTTC	1 cut(s)	1422
LmnI	GCTCC	4 cut(s)	8, 38, 1757, 2153
LweI	GCATC	5 cut(s)	553, 1826, 1972, 1973, 2413
MaeII	ACGT	5 cut(s)	1747, 1869, 2292, 2410, 2436
MaeIII	GTNAC	9 cut(s)	47, 640, 794, 824, 869, 898, 1010, 2219, 2380
MfeI	CAATTG	1 cut(s)	2234
MflI	RGATCY	1 cut(s)	1768
MhlI	GDGCHC	4 cut(s)	13, 102, 634, 1271
MlsI	TGGCCA	1 cut(s)	908
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	3 cut(s)	53, 179, 1891
MmeI	TCCRAC	2 cut(s)	806, 2336
Mox20I	TGGCCA	1 cut(s)	908
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	1590
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	2 cut(s)	1128, 1260
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	405, 743
MspI	CCGG	5 cut(s)	380, 628, 1591, 1636, 2440
MspR9I	CCNGG	4 cut(s)	559, 629, 1636, 2389
MunI	CAATTG	1 cut(s)	2234
MvaI	CCWGG	2 cut(s)	559, 2389
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	215, 1438, 2009, 2401
NaeI	GCCGGC	1 cut(s)	1592
NciI	CCSGG	2 cut(s)	629, 1636
NcoI	CCATGG	2 cut(s)	903, 1381
NgoMIV	GCCGGC	1 cut(s)	1590
NlaIV	GGNNCC	1 cut(s)	1799
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	3 cut(s)	47, 824, 2380
NruI	TCGCGA	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	935, 1811, 2102
PagI	TCATGA	1 cut(s)	1306
PasI	CCCWGGG	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	375
PciI	ACATGT	1 cut(s)	2098
PciSI	GCTCTTC	1 cut(s)	1422
PcsI	WCGNNNNNNNCGW	4 cut(s)	93, 435, 459, 1744
PdiI	GCCGGC	1 cut(s)	1592
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	8 cut(s)	78, 110, 678, 988, 1278, 1652, 2059, 2243
Ple19I	CGATCG	2 cut(s)	493, 2322
PleI	GAGTC	3 cut(s)	53, 178, 1891
PpsI	GAGTC	3 cut(s)	53, 178, 1891
PpuMI	RGGWCCY	1 cut(s)	1797
PscI	ACATGT	1 cut(s)	2098
Psp124BI	GAGCTC	2 cut(s)	13, 102
Psp1406I	AACGTT	1 cut(s)	1747
Psp5II	RGGWCCY	1 cut(s)	1797
Psp6I	CCWGG	2 cut(s)	557, 2387
PspEI	GGTNACC	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	1399, 1494
PspGI	CCWGG	2 cut(s)	557, 2387
PspN4I	GGNNCC	1 cut(s)	1799
PspPI	GGNCC	4 cut(s)	1072, 1797, 2026, 2336
PspPPI	RGGWCCY	1 cut(s)	1797
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	1768
PvuI	CGATCG	2 cut(s)	493, 2322
PvuII	CAGCTG	2 cut(s)	405, 743
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	2 cut(s)	605, 1829
RsaNI	GTAC	2 cut(s)	604, 1828
Rsr2I	CGGWCCG	1 cut(s)	2336
RsrII	CGGWCCG	1 cut(s)	2336
SacI	GAGCTC	2 cut(s)	13, 102
SapI	GCTCTTC	1 cut(s)	1422
SaqAI	TTAA	2 cut(s)	1128, 1260
Sau96I	GGNCC	4 cut(s)	1072, 1797, 2026, 2336
SchI	GAGTC	3 cut(s)	53, 179, 1891
ScrFI	CCNGG	4 cut(s)	559, 629, 1636, 2389
SduI	GDGCHC	4 cut(s)	13, 102, 634, 1271
SfaNI	GCATC	5 cut(s)	553, 1826, 1972, 1973, 2413
SfcI	CTRYAG	4 cut(s)	174, 829, 1453, 2007
SinI	GGWCC	4 cut(s)	1072, 1797, 2026, 2336
SmlI	CTYRAG	4 cut(s)	12, 518, 1436, 1613
SmoI	CTYRAG	4 cut(s)	12, 518, 1436, 1613
SseBI	AGGCCT	1 cut(s)	375
SstI	GAGCTC	2 cut(s)	13, 102
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	4 cut(s)	557, 627, 1634, 2387
StyI	CCWWGG	2 cut(s)	903, 1381
TaiI	ACGT	5 cut(s)	1750, 1872, 2295, 2413, 2439
TauI	GCSGC	3 cut(s)	212, 411, 1022
TfiI	GAWTC	8 cut(s)	78, 110, 678, 988, 1278, 1652, 2059, 2243
Tru1I	TTAA	2 cut(s)	1128, 1260
Tru9I	TTAA	2 cut(s)	1128, 1260
TscAI	CASTG	5 cut(s)	199, 942, 1429, 2383, 2434
TseFI	GTSAC	3 cut(s)	47, 824, 2380
Tsp45I	GTSAC	3 cut(s)	47, 824, 2380
TspGWI	ACGGA	3 cut(s)	649, 659, 1890
TspRI	CASTG	5 cut(s)	199, 942, 1429, 2383, 2434
VpaK11BI	GGWCC	4 cut(s)	1072, 1797, 2026, 2336
XagI	CCTNNNNNAGG	1 cut(s)	1613
XapI	RAATTY	1 cut(s)	1302
XceI	RCATGY	3 cut(s)	935, 1811, 2102
XmiI	GTMKAC	3 cut(s)	330, 486, 1631
XmnI	GAANNNNTTC	1 cut(s)	389
ZraI	GACGTC	3 cut(s)	1870, 2411, 2437
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.