Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354969.1

Orthogroup ID

OG0001450

Physical Location & Seq

Genomic Coordinates Reverse (-)

43 .. 1003

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgtttatctgtttccaacagcatgttgctgcatcaaaagggtacgaggatattgctcgttttcttattgaaaaagggggagacgtcaagatgtcagataagtttgggaagactccattgcttgaagccataaaaaatgggcatgatcaagttgcttctttacttgttcaggcaggggcatcacttactattgaagatgctggtgattttctctgtgctactgtagcaaagagggatttggacctcgtaaaaaggcttttagccaatgacatgaatccaaatgcgaaaaattatgatcagagatcaccactacatgtagctgcttcagaagggttatatccaatggcagagttcctattagaagcaggagcaagtgttctatcaaaggacagatgggggaaaactccacttgatgaagcccgcataggtggaagtaacaagctaatgcaattgctcgaatctacaagactttctcagttgtcagagttctctgatggttctcaagtagtgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

171

Amino Acids

18.63

Weight (kDa)

5.38

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02850 AT3G02850 AT3G02850 AT5G37500 AT5G37500 AT5G37500 AT5G37500
fragaria_vesca	FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_1g30020 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700 FvH4_5g17700
malus_domestica	MD09G1267200.v1.1 MD09G1267300.v1.1 MD14G1239500.v1.1 MD17G1255200.v1.1
prunus_persica	Prupe.3G164900_v2.0.a1 Prupe.3G164900_v2.0.a1 Prupe.5G237000_v2.0.a1 Prupe.5G237000_v2.0.a1
pyrus_communis	pycom09g18000 pycom14g20040 pycom14g20050 pycom17g26330
rosa_chinensis	RchiOBHm_Chr3g0492241 RchiOBHm_Chr7g0177951
rosa_laevigata	RLG00000005488 RLG00000022790
rosa_multiflora	Rmu_co8354969.1_g000001 Rmu_sc0003579.1_g000005 Rmu_sc0017005.1_g000005
rosa_roxburghii	Rroxscaffold_3G00275370 Rroxscaffold_6G00392480
rosa_rugosa	Rorug03G0252500 Rorug03G0252600 Rorug06G0411600.1 Rorug06G0411700.1
rosa_samantha	Rh3AG302600 Rh3BG338200 Rh3CG335700 Rh3DG337800 Rh7AG010400 Rh7BG010600 Rh7CG011000 Rh7DG010700
rosa_wichuraiana	Rw3G026690 Rw7G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AciI	CCGC	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	71, 125, 194
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	2 cut(s)	320, 442
AluI	AGCT	2 cut(s)	320, 442
Alw26I	GTCTC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	29, 320
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	215, 297
AvaII	GGWCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	16, 307
BccI	CCATC	2 cut(s)	387, 488
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BclI	TGATCA	2 cut(s)	145, 295
BcoDI	GTCTC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	30, 321
BlsI	GCNGC	2 cut(s)	31, 322
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmsI	GCATC	3 cut(s)	41, 187, 188
BpiI	GAAGAC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse3DI	GCAATG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	16, 307
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	145, 295, 302
BspACI	CCGC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	116
BssMI	GATC	3 cut(s)	145, 295, 302
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	474
BstKTI	GATC	3 cut(s)	148, 298, 305
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	145, 295, 302
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	26, 317
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	16, 307
BstV2I	GAAGAC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	4 cut(s)	23, 143, 271, 314
CviJI	RGCY	6 cut(s)	128, 256, 263, 320, 419, 442
CviKI_1	RGCY	6 cut(s)	128, 256, 263, 320, 419, 442
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	147, 297, 304
DpnII	GATC	3 cut(s)	145, 295, 302
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	26, 146, 274, 317
FaiI	YATR	8 cut(s)	24, 131, 144, 272, 294, 315, 337, 425
FatI	CATG	4 cut(s)	22, 142, 270, 313
FauI	CCCGC	1 cut(s)	428
FbaI	TGATCA	2 cut(s)	145, 295
Fnu4HI	GCNGC	2 cut(s)	30, 321
Fsp4HI	GCNGC	2 cut(s)	30, 321
GluI	GCNGC	2 cut(s)	30, 321
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	26, 146, 274, 317
HinfI	GANTC	3 cut(s)	112, 274, 458
HphI	GGTGA	2 cut(s)	215, 297
Hpy188I	TCNGA	5 cut(s)	97, 300, 328, 484, 493
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	32, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	26, 146, 274, 317
Ksp22I	TGATCA	2 cut(s)	145, 295
Kzo9I	GATC	3 cut(s)	145, 295, 302
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	4 cut(s)	155, 159, 186, 351
Lsp1109I	GCAGC	2 cut(s)	16, 307
LweI	GCATC	3 cut(s)	41, 187, 188
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	3 cut(s)	147, 297, 304
MboI	GATC	3 cut(s)	145, 295, 302
MboII	GAAGA	2 cut(s)	121, 206
MfeI	CAATTG	1 cut(s)	449
MluCI	AATT	3 cut(s)	289, 449, 511
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	3 cut(s)	40, 225, 254
MunI	CAATTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	145, 295, 302
NlaIII	CATG	4 cut(s)	26, 146, 274, 317
NspI	RCATGY	2 cut(s)	26, 317
PciI	ACATGT	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	274, 458
PkrI	GCNGC	2 cut(s)	31, 322
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	2 cut(s)	30, 321
Sau3AI	GATC	3 cut(s)	145, 295, 302
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	106
SetI	ASST	5 cut(s)	87, 246, 322, 430, 444
SfaNI	GCATC	3 cut(s)	41, 187, 188
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	289, 449, 511
SsiI	CCGC	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	456
TasI	AATT	3 cut(s)	289, 449, 511
TfiI	GAWTC	2 cut(s)	274, 458
TseI	GCWGC	2 cut(s)	29, 320
TspDTI	ATGAA	2 cut(s)	287, 429
VpaK11BI	GGWCC	1 cut(s)	241
XceI	RCATGY	2 cut(s)	26, 317
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.