E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4041, 4887 |
| AarI | CACCTGC | 1 cut(s) | 619 |
| AatII | GACGTC | 1 cut(s) | 2083 |
| Acc16I | TGCGCA | 1 cut(s) | 1324 |
| Acc36I | ACCTGC | 3 cut(s) | 534, 619, 1328 |
| AccB1I | GGYRCC | 1 cut(s) | 509 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1012 |
| AccBSI | CCGCTC | 3 cut(s) | 573, 2710, 5216 |
| AccI | GTMKAC | 1 cut(s) | 3011 |
| AccII | CGCG | 3 cut(s) | 139, 238, 240 |
| AccIII | TCCGGA | 1 cut(s) | 5092 |
| AclWI | GGATC | 9 cut(s) | 1692, 1853, 2249, 2864, 3529, 3671, 4417, 5673, 5686 |
| AcoI | YGGCCR | 2 cut(s) | 241, 4751 |
| AcuI | CTGAAG | 9 cut(s) | 470, 602, 932, 1038, 1652, 2235, 3438, 4364, 5538 |
| AcyI | GRCGYC | 2 cut(s) | 2080, 3652 |
| AdeI | CACNNNGTG | 1 cut(s) | 304 |
| AfeI | AGCGCT | 1 cut(s) | 89 |
| AflIII | ACRYGT | 2 cut(s) | 1864, 2216 |
| AhlI | ACTAGT | 1 cut(s) | 1216 |
| AjiI | CACGTC | 1 cut(s) | 2762 |
| AjnI | CCWGG | 7 cut(s) | 1657, 2821, 3354, 4271, 4748, 5083, 5461 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 426, 458 |
| AleI | CACNNNNGTG | 1 cut(s) | 5498 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 212, 244 |
| Alw44I | GTGCAC | 1 cut(s) | 2757 |
| AlwI | GGATC | 9 cut(s) | 1692, 1853, 2249, 2864, 3529, 3671, 4417, 5673, 5686 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 901, 2993 |
| Ama87I | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| Aor13HI | TCCGGA | 1 cut(s) | 5092 |
| Aor51HI | AGCGCT | 1 cut(s) | 89 |
| AoxI | GGCC | 9 cut(s) | 30, 147, 156, 241, 1729, 2909, 3175, 3741, 4751 |
| ApaLI | GTGCAC | 1 cut(s) | 2757 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2901, 5509 |
| AspA2I | CCTAGG | 1 cut(s) | 5450 |
| AspLEI | GCGC | 7 cut(s) | 90, 141, 240, 1325, 5037, 5449, 5597 |
| AspS9I | GGNCC | 8 cut(s) | 147, 156, 1553, 1730, 3176, 3535, 4571, 5275 |
| AsuC2I | CCSGG | 5 cut(s) | 2046, 2259, 2260, 3620, 5112 |
| AvaI | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| AvaII | GGWCC | 4 cut(s) | 1553, 3535, 4571, 5275 |
| AvrII | CCTAGG | 1 cut(s) | 5450 |
| AxyI | CCTNAGG | 1 cut(s) | 1620 |
| BaeGI | GKGCMC | 4 cut(s) | 484, 2761, 4369, 4562 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3432, 3465 |
| BamHI | GGATCC | 1 cut(s) | 5678 |
| BanI | GGYRCC | 1 cut(s) | 509 |
| BanII | GRGCYC | 4 cut(s) | 3122, 4105, 4947, 5366 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1757, 1789 |
| BauI | CACGAG | 4 cut(s) | 299, 1632, 3115, 4362 |
| BbsI | GAAGAC | 7 cut(s) | 528, 1655, 3351, 4256, 4370, 4958, 5186 |
| BbvCI | CCTCAGC | 1 cut(s) | 3435 |
| BceAI | ACGGC | 3 cut(s) | 412, 1067, 4893 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4106, 4140 |
| BciT130I | CCWGG | 7 cut(s) | 1659, 2823, 3356, 4273, 4750, 5085, 5463 |
| BciVI | GTATCC | 2 cut(s) | 3433, 5342 |
| BclI | TGATCA | 3 cut(s) | 4684, 5326, 5341 |
| BcnI | CCSGG | 5 cut(s) | 2046, 2259, 2260, 3620, 5112 |
| BcuI | ACTAGT | 1 cut(s) | 1216 |
| BfmI | CTRYAG | 7 cut(s) | 1106, 1422, 1777, 2985, 3447, 3510, 3588 |
| BfoI | RGCGCY | 1 cut(s) | 91 |
| BfuAI | ACCTGC | 3 cut(s) | 534, 619, 1328 |
| BfuI | GTATCC | 2 cut(s) | 3433, 5342 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 155 |
| BlnI | CCTAGG | 1 cut(s) | 5450 |
| BlpI | GCTNAGC | 2 cut(s) | 2884, 4941 |
| BmcAI | AGTACT | 5 cut(s) | 691, 1392, 2243, 2417, 4334 |
| Bme18I | GGWCC | 4 cut(s) | 1553, 3535, 4571, 5275 |
| BmeT110I | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| BmgBI | CACGTC | 1 cut(s) | 2762 |
| BmgT120I | GGNCC | 8 cut(s) | 147, 156, 1553, 1730, 3176, 3535, 4571, 5275 |
| BmiI | GGNNCC | 9 cut(s) | 14, 511, 1345, 1513, 1875, 2714, 3096, 4572, 5680 |
| BmrI | ACTGGG | 2 cut(s) | 4572, 5556 |
| BmuI | ACTGGG | 2 cut(s) | 4572, 5556 |
| BpiI | GAAGAC | 7 cut(s) | 528, 1655, 3351, 4256, 4370, 4958, 5186 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 20, 52, 3664, 3696 |
| BpmI | CTGGAG | 4 cut(s) | 1020, 1278, 2176, 4088 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1122, 2574, 3435 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2884, 4941 |
| BpuEI | CTTGAG | 4 cut(s) | 2579, 4177, 4601, 5405 |
| BpuMI | CCSGG | 5 cut(s) | 2046, 2259, 2260, 3620, 5112 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5571 |
| BsaHI | GRCGYC | 2 cut(s) | 2080, 3652 |
| BsaI | GGTCTC | 1 cut(s) | 2385 |
| BsaWI | WCCGGW | 2 cut(s) | 4473, 5092 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1414, 1444, 4038, 4068, 4325, 4355 |
| Bse21I | CCTNAGG | 1 cut(s) | 1620 |
| Bse3DI | GCAATG | 4 cut(s) | 549, 3579, 3600, 4833 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5571 |
| BseAI | TCCGGA | 1 cut(s) | 5092 |
| BseBI | CCWGG | 7 cut(s) | 1659, 2823, 3356, 4273, 4750, 5085, 5463 |
| BseJI | GATNNNNATC | 1 cut(s) | 5571 |
| BseMI | GCAATG | 4 cut(s) | 549, 3579, 3600, 4833 |
| BseRI | GAGGAG | 4 cut(s) | 91, 2758, 3909, 4716 |
| BseSI | GKGCMC | 4 cut(s) | 484, 2761, 4369, 4562 |
| BseX3I | CGGCCG | 1 cut(s) | 241 |
| BseYI | CCCAGC | 2 cut(s) | 1783, 2790 |
| BsgI | GTGCAG | 1 cut(s) | 4273 |
| Bsh1236I | CGCG | 3 cut(s) | 139, 238, 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BshFI | GGCC | 9 cut(s) | 32, 149, 158, 243, 1731, 2911, 3177, 3743, 4753 |
| BshNI | GGYRCC | 1 cut(s) | 509 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BsiHKCI | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| BslFI | GGGAC | 8 cut(s) | 547, 1070, 1219, 2477, 3263, 4147, 4731, 5557 |
| BsmBI | CGTCTC | 4 cut(s) | 101, 359, 2768, 5303 |
| BsmFI | GGGAC | 8 cut(s) | 547, 1070, 1219, 2477, 3263, 4147, 4731, 5557 |
| BsmI | GAATGC | 5 cut(s) | 2329, 3196, 4446, 4765, 5509 |
| BsnI | GGCC | 9 cut(s) | 32, 149, 158, 243, 1731, 2911, 3177, 3743, 4753 |
| Bso31I | GGTCTC | 1 cut(s) | 2385 |
| BsoBI | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| Bsp13I | TCCGGA | 1 cut(s) | 5092 |
| Bsp1407I | TGTACA | 1 cut(s) | 5640 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2884, 4941 |
| Bsp19I | CCATGG | 2 cut(s) | 207, 1210 |
| BspANI | GGCC | 9 cut(s) | 32, 149, 158, 243, 1731, 2911, 3177, 3743, 4753 |
| BspEI | TCCGGA | 1 cut(s) | 5092 |
| BspFNI | CGCG | 3 cut(s) | 139, 238, 240 |
| BspHI | TCATGA | 4 cut(s) | 739, 1114, 1545, 5693 |
| BspLI | GGNNCC | 9 cut(s) | 14, 511, 1345, 1513, 1875, 2714, 3096, 4572, 5680 |
| BspMAI | CTGCAG | 3 cut(s) | 1110, 2989, 3592 |
| BspMI | ACCTGC | 3 cut(s) | 534, 619, 1328 |
| BspPI | GGATC | 9 cut(s) | 1692, 1853, 2249, 2864, 3529, 3671, 4417, 5673, 5686 |
| BspQI | GCTCTTC | 4 cut(s) | 2631, 3104, 3199, 4845 |
| BspT107I | GGYRCC | 1 cut(s) | 509 |
| BspTNI | GGTCTC | 1 cut(s) | 2385 |
| BsrBI | CCGCTC | 3 cut(s) | 573, 2710, 5216 |
| BsrDI | GCAATG | 4 cut(s) | 549, 3579, 3600, 4833 |
| BsrGI | TGTACA | 1 cut(s) | 5640 |
| BssNI | GRCGYC | 2 cut(s) | 2080, 3652 |
| BssSI | CACGAG | 4 cut(s) | 299, 1632, 3115, 4362 |
| BssT1I | CCWWGG | 8 cut(s) | 207, 1210, 1507, 1929, 2115, 3531, 5450, 5628 |
| Bst2BI | CACGAG | 4 cut(s) | 299, 1632, 3115, 4362 |
| Bst2UI | CCWGG | 7 cut(s) | 1659, 2823, 3356, 4273, 4750, 5085, 5463 |
| BstACI | GRCGYC | 2 cut(s) | 2080, 3652 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstAUI | TGTACA | 1 cut(s) | 5640 |
| BstDSI | CCRYGG | 2 cut(s) | 207, 1210 |
| BstEII | GGTNACC | 1 cut(s) | 4778 |
| BstFNI | CGCG | 3 cut(s) | 139, 238, 240 |
| BstH2I | RGCGCY | 1 cut(s) | 91 |
| BstHHI | GCGC | 7 cut(s) | 90, 141, 240, 1325, 5037, 5449, 5597 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstNI | CCWGG | 7 cut(s) | 1659, 2823, 3356, 4273, 4750, 5085, 5463 |
| BstNSI | RCATGY | 5 cut(s) | 1139, 1868, 2220, 4299, 5595 |
| BstPI | GGTNACC | 1 cut(s) | 4778 |
| BstSFI | CTRYAG | 7 cut(s) | 1106, 1422, 1777, 2985, 3447, 3510, 3588 |
| BstSLI | GKGCMC | 4 cut(s) | 484, 2761, 4369, 4562 |
| BstUI | CGCG | 3 cut(s) | 139, 238, 240 |
| BstV2I | GAAGAC | 7 cut(s) | 528, 1655, 3351, 4256, 4370, 4958, 5186 |
| BstX2I | RGATCY | 4 cut(s) | 1684, 1858, 2254, 5678 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 208 |
| BstYI | RGATCY | 4 cut(s) | 1684, 1858, 2254, 5678 |
| BstZI | CGGCCG | 1 cut(s) | 241 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1620 |
| BsuI | GTATCC | 2 cut(s) | 3433, 5342 |
| BsuRI | GGCC | 9 cut(s) | 32, 149, 158, 243, 1731, 2911, 3177, 3743, 4753 |
| BtgI | CCRYGG | 2 cut(s) | 207, 1210 |
| BtrI | CACGTC | 1 cut(s) | 2762 |
| BtsI | GCAGTG | 6 cut(s) | 201, 899, 2500, 3802, 5352, 5481 |
| BveI | ACCTGC | 3 cut(s) | 534, 619, 1328 |
| CaiI | CAGNNNCTG | 2 cut(s) | 901, 2993 |
| CciI | TCATGA | 4 cut(s) | 739, 1114, 1545, 5693 |
| CciNI | GCGGCCGC | 1 cut(s) | 241 |
| CfoI | GCGC | 7 cut(s) | 90, 141, 240, 1325, 5037, 5449, 5597 |
| Cfr13I | GGNCC | 8 cut(s) | 147, 156, 1553, 1730, 3176, 3535, 4571, 5275 |
| Cfr9I | CCCGGG | 1 cut(s) | 2258 |
| CseI | GACGC | 4 cut(s) | 652, 1221, 2795, 3660 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1851, 1886, 2151, 2186, 4333, 4368 |
| DraI | TTTAAA | 1 cut(s) | 2301 |
| DraIII | CACNNNGTG | 1 cut(s) | 304 |
| EaeI | YGGCCR | 2 cut(s) | 241, 4751 |
| EagI | CGGCCG | 1 cut(s) | 241 |
| EciI | GGCGGA | 2 cut(s) | 41, 414 |
| Ecl136II | GAGCTC | 3 cut(s) | 3120, 4103, 4945 |
| EclXI | CGGCCG | 1 cut(s) | 241 |
| Eco130I | CCWWGG | 8 cut(s) | 207, 1210, 1507, 1929, 2115, 3531, 5450, 5628 |
| Eco24I | GRGCYC | 4 cut(s) | 3122, 4105, 4947, 5366 |
| Eco31I | GGTCTC | 1 cut(s) | 2385 |
| Eco32I | GATATC | 4 cut(s) | 757, 921, 3328, 5131 |
| Eco47I | GGWCC | 4 cut(s) | 1553, 3535, 4571, 5275 |
| Eco47III | AGCGCT | 1 cut(s) | 89 |
| Eco52I | CGGCCG | 1 cut(s) | 241 |
| Eco53kI | GAGCTC | 3 cut(s) | 3120, 4103, 4945 |
| Eco57I | CTGAAG | 9 cut(s) | 470, 602, 932, 1038, 1652, 2235, 3438, 4364, 5538 |
| Eco81I | CCTNAGG | 1 cut(s) | 1620 |
| Eco88I | CYCGRG | 5 cut(s) | 144, 153, 2258, 4946, 5408 |
| Eco91I | GGTNACC | 1 cut(s) | 4778 |
| EcoICRI | GAGCTC | 3 cut(s) | 3120, 4103, 4945 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1553, 3176, 4571 |
| EcoO65I | GGTNACC | 1 cut(s) | 4778 |
| EcoRI | GAATTC | 4 cut(s) | 256, 1993, 2916, 4190 |
| EcoRII | CCWGG | 7 cut(s) | 1657, 2821, 3354, 4271, 4748, 5083, 5461 |
| EcoRV | GATATC | 4 cut(s) | 757, 921, 3328, 5131 |
| EcoT14I | CCWWGG | 8 cut(s) | 207, 1210, 1507, 1929, 2115, 3531, 5450, 5628 |
| EcoT22I | ATGCAT | 3 cut(s) | 1063, 1141, 3307 |
| EcoT38I | GRGCYC | 4 cut(s) | 3122, 4105, 4947, 5366 |
| ErhI | CCWWGG | 8 cut(s) | 207, 1210, 1507, 1929, 2115, 3531, 5450, 5628 |
| Esp3I | CGTCTC | 4 cut(s) | 101, 359, 2768, 5303 |
| FaqI | GGGAC | 8 cut(s) | 547, 1070, 1219, 2477, 3263, 4147, 4731, 5557 |
| FauI | CCCGC | 5 cut(s) | 15, 205, 3592, 3698, 5209 |
| FauNDI | CATATG | 1 cut(s) | 5266 |
| FbaI | TGATCA | 3 cut(s) | 4684, 5326, 5341 |
| FblI | GTMKAC | 1 cut(s) | 3011 |
| FriOI | GRGCYC | 4 cut(s) | 3122, 4105, 4947, 5366 |
| FspI | TGCGCA | 1 cut(s) | 1324 |
| GlaI | GCGC | 7 cut(s) | 89, 140, 239, 1324, 5036, 5448, 5596 |
| GsaI | CCCAGC | 2 cut(s) | 1787, 2794 |
| GsuI | CTGGAG | 4 cut(s) | 1020, 1278, 2176, 4088 |
| HaeII | RGCGCY | 1 cut(s) | 91 |
| HaeIII | GGCC | 9 cut(s) | 32, 149, 158, 243, 1731, 2911, 3177, 3743, 4753 |
| HgaI | GACGC | 4 cut(s) | 652, 1221, 2795, 3660 |
| HhaI | GCGC | 7 cut(s) | 90, 141, 240, 1325, 5037, 5449, 5597 |
| Hin1I | GRCGYC | 2 cut(s) | 2080, 3652 |
| Hin6I | GCGC | 7 cut(s) | 88, 139, 238, 1323, 5035, 5447, 5595 |
| HinP1I | GCGC | 7 cut(s) | 88, 139, 238, 1323, 5035, 5447, 5595 |
| HincII | GTYRAC | 7 cut(s) | 118, 867, 1966, 2585, 3690, 4287, 4711 |
| HindII | GTYRAC | 7 cut(s) | 118, 867, 1966, 2585, 3690, 4287, 4711 |
| HindIII | AAGCTT | 5 cut(s) | 1910, 2370, 2576, 2881, 5609 |
| HpaI | GTTAAC | 2 cut(s) | 118, 4287 |
| Hpy99I | CGWCG | 5 cut(s) | 220, 562, 2085, 3042, 3302 |
| HpyCH4IV | ACGT | 3 cut(s) | 2062, 2080, 2761 |
| HpySE526I | ACGT | 3 cut(s) | 2062, 2080, 2761 |
| Hsp92I | GRCGYC | 2 cut(s) | 2080, 3652 |
| HspAI | GCGC | 7 cut(s) | 88, 139, 238, 1323, 5035, 5447, 5595 |
| Kpn2I | TCCGGA | 1 cut(s) | 5092 |
| Ksp22I | TGATCA | 3 cut(s) | 4684, 5326, 5341 |
| KspAI | GTTAAC | 2 cut(s) | 118, 4287 |
| LguI | GCTCTTC | 4 cut(s) | 2631, 3104, 3199, 4845 |
| LmnI | GCTCC | 8 cut(s) | 12, 199, 295, 1132, 1343, 2990, 3896, 4729 |
| MaeII | ACGT | 3 cut(s) | 2062, 2080, 2761 |
| MbiI | CCGCTC | 3 cut(s) | 573, 2710, 5216 |
| MfeI | CAATTG | 3 cut(s) | 3962, 5022, 5052 |
| MflI | RGATCY | 4 cut(s) | 1684, 1858, 2254, 5678 |
| MlyI | GAGTC | 9 cut(s) | 206, 1011, 1808, 2140, 2286, 2737, 3371, 3422, 5311 |
| MmeI | TCCRAC | 9 cut(s) | 285, 1089, 1440, 2204, 2254, 3744, 4140, 4632, 4964 |
| Mph1103I | ATGCAT | 3 cut(s) | 1063, 1141, 3307 |
| MroI | TCCGGA | 1 cut(s) | 5092 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2901, 5509 |
| MslI | CAYNNNNRTG | 6 cut(s) | 206, 792, 834, 1144, 1520, 5498 |
| MspA1I | CMGCKG | 8 cut(s) | 191, 649, 821, 2948, 3434, 3715, 4257, 4490 |
| MunI | CAATTG | 3 cut(s) | 3962, 5022, 5052 |
| Mva1269I | GAATGC | 5 cut(s) | 2329, 3196, 4446, 4765, 5509 |
| MvaI | CCWGG | 7 cut(s) | 1659, 2823, 3356, 4273, 4750, 5085, 5463 |
| MvnI | CGCG | 3 cut(s) | 139, 238, 240 |
| NciI | CCSGG | 5 cut(s) | 2046, 2259, 2260, 3620, 5112 |
| NcoI | CCATGG | 2 cut(s) | 207, 1210 |
| NdeI | CATATG | 1 cut(s) | 5266 |
| NlaIV | GGNNCC | 9 cut(s) | 14, 511, 1345, 1513, 1875, 2714, 3096, 4572, 5680 |
| NmeAIII | GCCGAG | 2 cut(s) | 1918, 4153 |
| NmuCI | GTSAC | 6 cut(s) | 410, 897, 2278, 3464, 3975, 4601 |
| NotI | GCGGCCGC | 1 cut(s) | 241 |
| NsbI | TGCGCA | 1 cut(s) | 1324 |
| NsiI | ATGCAT | 3 cut(s) | 1063, 1141, 3307 |
| NspI | RCATGY | 5 cut(s) | 1139, 1868, 2220, 4299, 5595 |
| OliI | CACNNNNGTG | 1 cut(s) | 5498 |
| PaeI | GCATGC | 2 cut(s) | 1139, 4299 |
| PagI | TCATGA | 4 cut(s) | 739, 1114, 1545, 5693 |
| PaqCI | CACCTGC | 1 cut(s) | 619 |
| PciI | ACATGT | 2 cut(s) | 1864, 2216 |
| PciSI | GCTCTTC | 4 cut(s) | 2631, 3104, 3199, 4845 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 73, 2920, 3914, 4465 |
| PctI | GAATGC | 5 cut(s) | 2329, 3196, 4446, 4765, 5509 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2901, 5509 |
| PflFI | GACNNNGTC | 1 cut(s) | 4715 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1012 |
| PleI | GAGTC | 9 cut(s) | 206, 1010, 1807, 2139, 2285, 2736, 3371, 3422, 5311 |
| PpsI | GAGTC | 9 cut(s) | 206, 1010, 1807, 2139, 2285, 2736, 3371, 3422, 5311 |
| PpuMI | RGGWCCY | 2 cut(s) | 1553, 4571 |
| PscI | ACATGT | 2 cut(s) | 1864, 2216 |
| PsiI | TTATAA | 2 cut(s) | 4041, 4887 |
| Psp124BI | GAGCTC | 3 cut(s) | 3122, 4105, 4947 |
| Psp5II | RGGWCCY | 2 cut(s) | 1553, 4571 |
| Psp6I | CCWGG | 7 cut(s) | 1657, 2821, 3354, 4271, 4748, 5083, 5461 |
| PspEI | GGTNACC | 1 cut(s) | 4778 |
| PspFI | CCCAGC | 2 cut(s) | 1783, 2790 |
| PspGI | CCWGG | 7 cut(s) | 1657, 2821, 3354, 4271, 4748, 5083, 5461 |
| PspN4I | GGNNCC | 9 cut(s) | 14, 511, 1345, 1513, 1875, 2714, 3096, 4572, 5680 |
| PspPI | GGNCC | 8 cut(s) | 147, 156, 1553, 1730, 3176, 3535, 4571, 5275 |
| PspPPI | RGGWCCY | 2 cut(s) | 1553, 4571 |
| PstI | CTGCAG | 3 cut(s) | 1110, 2989, 3592 |
| PstNI | CAGNNNCTG | 2 cut(s) | 901, 2993 |
| PsuI | RGATCY | 4 cut(s) | 1684, 1858, 2254, 5678 |
| PsyI | GACNNNGTC | 1 cut(s) | 4715 |
| PvuII | CAGCTG | 3 cut(s) | 649, 2948, 3715 |
| RseI | CAYNNNNRTG | 6 cut(s) | 206, 792, 834, 1144, 1520, 5498 |
| SacI | GAGCTC | 3 cut(s) | 3122, 4105, 4947 |
| SapI | GCTCTTC | 4 cut(s) | 2631, 3104, 3199, 4845 |
| Sau96I | GGNCC | 8 cut(s) | 147, 156, 1553, 1730, 3176, 3535, 4571, 5275 |
| SbfI | CCTGCAGG | 1 cut(s) | 2989 |
| ScaI | AGTACT | 5 cut(s) | 691, 1392, 2243, 2417, 4334 |
| SchI | GAGTC | 9 cut(s) | 206, 1011, 1808, 2140, 2286, 2737, 3371, 3422, 5311 |
| SdaI | CCTGCAGG | 1 cut(s) | 2989 |
| SfcI | CTRYAG | 7 cut(s) | 1106, 1422, 1777, 2985, 3447, 3510, 3588 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 155 |
| SinI | GGWCC | 4 cut(s) | 1553, 3535, 4571, 5275 |
| SmaI | CCCGGG | 1 cut(s) | 2260 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 206, 792, 834, 1144, 1520, 5498 |
| SmlI | CTYRAG | 4 cut(s) | 2594, 4156, 4580, 5384 |
| SmoI | CTYRAG | 4 cut(s) | 2594, 4156, 4580, 5384 |
| SpeI | ACTAGT | 1 cut(s) | 1216 |
| SphI | GCATGC | 2 cut(s) | 1139, 4299 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2989 |
| SspI | AATATT | 3 cut(s) | 1822, 4544, 5256 |
| SstI | GAGCTC | 3 cut(s) | 3122, 4105, 4947 |
| StyI | CCWWGG | 8 cut(s) | 207, 1210, 1507, 1929, 2115, 3531, 5450, 5628 |
| TaiI | ACGT | 3 cut(s) | 2065, 2083, 2764 |
| TauI | GCSGC | 7 cut(s) | 191, 243, 246, 821, 4260, 4756, 5197 |
| TseFI | GTSAC | 6 cut(s) | 410, 897, 2278, 3464, 3975, 4601 |
| Tsp45I | GTSAC | 6 cut(s) | 410, 897, 2278, 3464, 3975, 4601 |
| TspGWI | ACGGA | 4 cut(s) | 383, 522, 4339, 5327 |
| TspMI | CCCGGG | 1 cut(s) | 2258 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4715 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1012 |
| VneI | GTGCAC | 1 cut(s) | 2757 |
| VpaK11BI | GGWCC | 4 cut(s) | 1553, 3535, 4571, 5275 |
| XbaI | TCTAGA | 1 cut(s) | 4996 |
| XceI | RCATGY | 5 cut(s) | 1139, 1868, 2220, 4299, 5595 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 877, 5285, 5438 |
| XmaI | CCCGGG | 1 cut(s) | 2258 |
| XmaJI | CCTAGG | 1 cut(s) | 5450 |
| XmiI | GTMKAC | 1 cut(s) | 3011 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2901, 5509 |
| ZraI | GACGTC | 1 cut(s) | 2081 |
| ZrmI | AGTACT | 5 cut(s) | 691, 1392, 2243, 2417, 4334 |
| Zsp2I | ATGCAT | 3 cut(s) | 1063, 1141, 3307 |