E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1550, 4035, 4881 |
| AarI | CACCTGC | 1 cut(s) | 622 |
| AatII | GACGTC | 1 cut(s) | 2080 |
| Acc36I | ACCTGC | 3 cut(s) | 537, 622, 1331 |
| AccB1I | GGYRCC | 1 cut(s) | 512 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1015 |
| AccBSI | CCGCTC | 3 cut(s) | 576, 2707, 5213 |
| AccI | GTMKAC | 4 cut(s) | 949, 1447, 2471, 3008 |
| AccII | CGCG | 3 cut(s) | 247, 249, 3615 |
| AccIII | TCCGGA | 1 cut(s) | 5089 |
| AcoI | YGGCCR | 6 cut(s) | 204, 250, 771, 891, 4894, 5287 |
| AcyI | GRCGYC | 2 cut(s) | 2077, 3646 |
| AfeI | AGCGCT | 1 cut(s) | 92 |
| AflIII | ACRYGT | 1 cut(s) | 2213 |
| AhlI | ACTAGT | 1 cut(s) | 1219 |
| AjnI | CCWGG | 7 cut(s) | 381, 1660, 2254, 3348, 4742, 5080, 5458 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AleI | CACNNNNGTG | 1 cut(s) | 795 |
| Alw21I | GWGCWC | 9 cut(s) | 303, 784, 964, 2692, 2758, 2818, 3113, 3119, 5446 |
| Alw44I | GTGCAC | 2 cut(s) | 2754, 5442 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 904, 2255, 2990, 3524 |
| Ama87I | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| Aor13HI | TCCGGA | 1 cut(s) | 5089 |
| Aor51HI | AGCGCT | 1 cut(s) | 92 |
| ApaLI | GTGCAC | 2 cut(s) | 2754, 5442 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2898, 2926, 5506 |
| AspA2I | CCTAGG | 2 cut(s) | 1366, 5447 |
| AspLEI | GCGC | 5 cut(s) | 93, 249, 821, 1328, 5594 |
| AspS9I | GGNCC | 7 cut(s) | 159, 168, 493, 1556, 1733, 3173, 4565 |
| AsuC2I | CCSGG | 2 cut(s) | 2049, 5109 |
| AvaI | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| AvaII | GGWCC | 2 cut(s) | 1556, 4565 |
| AvrII | CCTAGG | 2 cut(s) | 1366, 5447 |
| AxyI | CCTNAGG | 1 cut(s) | 1623 |
| BaeGI | GKGCMC | 5 cut(s) | 487, 2758, 4363, 4556, 5446 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3426, 3459 |
| BalI | TGGCCA | 1 cut(s) | 4896 |
| BamHI | GGATCC | 1 cut(s) | 5675 |
| BanI | GGYRCC | 1 cut(s) | 512 |
| BanII | GRGCYC | 3 cut(s) | 554, 3119, 5363 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1760, 1792 |
| BauI | CACGAG | 4 cut(s) | 302, 1635, 3112, 4356 |
| BbsI | GAAGAC | 5 cut(s) | 1658, 4250, 4327, 4364, 4952 |
| Bbv12I | GWGCWC | 9 cut(s) | 303, 784, 964, 2692, 2758, 2818, 3113, 3119, 5446 |
| BbvCI | CCTCAGC | 2 cut(s) | 3429, 4122 |
| BceAI | ACGGC | 5 cut(s) | 176, 415, 1513, 1747, 5274 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3695, 3729, 5003, 5037 |
| BciT130I | CCWGG | 7 cut(s) | 383, 1662, 2256, 3350, 4744, 5082, 5460 |
| BciVI | GTATCC | 2 cut(s) | 3427, 5339 |
| BclI | TGATCA | 3 cut(s) | 4678, 5323, 5338 |
| BcnI | CCSGG | 2 cut(s) | 2049, 5109 |
| BcuI | ACTAGT | 1 cut(s) | 1219 |
| BfmI | CTRYAG | 7 cut(s) | 1425, 1788, 2982, 3441, 3504, 3582, 5493 |
| BfoI | RGCGCY | 1 cut(s) | 94 |
| BfuAI | ACCTGC | 3 cut(s) | 537, 622, 1331 |
| BfuI | GTATCC | 2 cut(s) | 3427, 5339 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 167 |
| BglII | AGATCT | 1 cut(s) | 1710 |
| BlnI | CCTAGG | 2 cut(s) | 1366, 5447 |
| BlpI | GCTNAGC | 1 cut(s) | 2881 |
| BmcAI | AGTACT | 3 cut(s) | 694, 2240, 4059 |
| Bme1390I | CCNGG | 9 cut(s) | 383, 1662, 2049, 2256, 3350, 4744, 5082, 5109, 5460 |
| Bme18I | GGWCC | 2 cut(s) | 1556, 4565 |
| BmeT110I | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| BmgT120I | GGNCC | 7 cut(s) | 159, 168, 493, 1556, 1733, 3173, 4565 |
| BmiI | GGNNCC | 9 cut(s) | 14, 380, 514, 1516, 1878, 2711, 3093, 4566, 5677 |
| BmrFI | CCNGG | 9 cut(s) | 383, 1662, 2049, 2256, 3350, 4744, 5082, 5109, 5460 |
| BmrI | ACTGGG | 2 cut(s) | 4566, 5553 |
| BmuI | ACTGGG | 2 cut(s) | 4566, 5553 |
| BpiI | GAAGAC | 5 cut(s) | 1658, 4250, 4327, 4364, 4952 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 20, 52, 3658, 3690 |
| BpmI | CTGGAG | 3 cut(s) | 1281, 2173, 4082 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1125, 2571, 3429, 4122, 5406 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2881 |
| BpuEI | CTTGAG | 3 cut(s) | 2576, 4595, 5402 |
| BpuMI | CCSGG | 2 cut(s) | 2049, 5109 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5568 |
| BsaHI | GRCGYC | 2 cut(s) | 2077, 3646 |
| BsaI | GGTCTC | 2 cut(s) | 2382, 3627 |
| BsaWI | WCCGGW | 3 cut(s) | 4467, 4803, 5089 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1417, 1447, 5084, 5114 |
| Bse21I | CCTNAGG | 1 cut(s) | 1623 |
| Bse3DI | GCAATG | 3 cut(s) | 3573, 3594, 4705 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5568 |
| BseAI | TCCGGA | 1 cut(s) | 5089 |
| BseBI | CCWGG | 7 cut(s) | 383, 1662, 2256, 3350, 4744, 5082, 5460 |
| BseJI | GATNNNNATC | 1 cut(s) | 5568 |
| BseMI | GCAATG | 3 cut(s) | 3573, 3594, 4705 |
| BseRI | GAGGAG | 4 cut(s) | 94, 97, 2755, 4710 |
| BseSI | GKGCMC | 5 cut(s) | 487, 2758, 4363, 4556, 5446 |
| BseX3I | CGGCCG | 1 cut(s) | 250 |
| BseYI | CCCAGC | 2 cut(s) | 2787, 3593 |
| BsgI | GTGCAG | 1 cut(s) | 4267 |
| Bsh1236I | CGCG | 3 cut(s) | 247, 249, 3615 |
| Bsh1285I | CGRYCG | 2 cut(s) | 253, 4341 |
| BshNI | GGYRCC | 1 cut(s) | 512 |
| BsiEI | CGRYCG | 2 cut(s) | 253, 4341 |
| BsiHKAI | GWGCWC | 9 cut(s) | 303, 784, 964, 2692, 2758, 2818, 3113, 3119, 5446 |
| BsiHKCI | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| BslFI | GGGAC | 5 cut(s) | 1073, 2045, 3260, 4725, 5554 |
| BsmBI | CGTCTC | 2 cut(s) | 104, 5300 |
| BsmFI | GGGAC | 5 cut(s) | 1073, 2045, 3260, 4725, 5554 |
| BsmI | GAATGC | 4 cut(s) | 1380, 2326, 4759, 5506 |
| Bso31I | GGTCTC | 2 cut(s) | 2382, 3627 |
| BsoBI | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| Bsp13I | TCCGGA | 1 cut(s) | 5089 |
| Bsp1407I | TGTACA | 1 cut(s) | 5637 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2881 |
| Bsp19I | CCATGG | 2 cut(s) | 216, 1213 |
| BspEI | TCCGGA | 1 cut(s) | 5089 |
| BspFNI | CGCG | 3 cut(s) | 247, 249, 3615 |
| BspHI | TCATGA | 4 cut(s) | 742, 1117, 4597, 5690 |
| BspLI | GGNNCC | 9 cut(s) | 14, 380, 514, 1516, 1878, 2711, 3093, 4566, 5677 |
| BspMAI | CTGCAG | 3 cut(s) | 1792, 3508, 3586 |
| BspMI | ACCTGC | 3 cut(s) | 537, 622, 1331 |
| BspQI | GCTCTTC | 5 cut(s) | 2628, 3101, 3196, 4839, 5351 |
| BspT107I | GGYRCC | 1 cut(s) | 512 |
| BspTNI | GGTCTC | 2 cut(s) | 2382, 3627 |
| BsrBI | CCGCTC | 3 cut(s) | 576, 2707, 5213 |
| BsrDI | GCAATG | 3 cut(s) | 3573, 3594, 4705 |
| BsrGI | TGTACA | 1 cut(s) | 5637 |
| BssNI | GRCGYC | 2 cut(s) | 2077, 3646 |
| BssSI | CACGAG | 4 cut(s) | 302, 1635, 3112, 4356 |
| BssT1I | CCWWGG | 6 cut(s) | 216, 1213, 1366, 1932, 5447, 5625 |
| Bst2BI | CACGAG | 4 cut(s) | 302, 1635, 3112, 4356 |
| Bst2UI | CCWGG | 7 cut(s) | 383, 1662, 2256, 3350, 4744, 5082, 5460 |
| BstACI | GRCGYC | 2 cut(s) | 2077, 3646 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5525 |
| BstAUI | TGTACA | 1 cut(s) | 5637 |
| BstDSI | CCRYGG | 4 cut(s) | 216, 999, 1213, 3613 |
| BstEII | GGTNACC | 1 cut(s) | 4772 |
| BstFNI | CGCG | 3 cut(s) | 247, 249, 3615 |
| BstH2I | RGCGCY | 1 cut(s) | 94 |
| BstHHI | GCGC | 5 cut(s) | 93, 249, 821, 1328, 5594 |
| BstMCI | CGRYCG | 2 cut(s) | 253, 4341 |
| BstNI | CCWGG | 7 cut(s) | 383, 1662, 2256, 3350, 4744, 5082, 5460 |
| BstNSI | RCATGY | 5 cut(s) | 1142, 1871, 2217, 4293, 5592 |
| BstPI | GGTNACC | 1 cut(s) | 4772 |
| BstSCI | CCNGG | 9 cut(s) | 381, 1660, 2047, 2254, 3348, 4742, 5080, 5107, 5458 |
| BstSFI | CTRYAG | 7 cut(s) | 1425, 1788, 2982, 3441, 3504, 3582, 5493 |
| BstSLI | GKGCMC | 5 cut(s) | 487, 2758, 4363, 4556, 5446 |
| BstUI | CGCG | 3 cut(s) | 247, 249, 3615 |
| BstV2I | GAAGAC | 5 cut(s) | 1658, 4250, 4327, 4364, 4952 |
| BstX2I | RGATCY | 6 cut(s) | 1687, 1710, 1861, 2172, 3485, 5675 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 217 |
| BstYI | RGATCY | 6 cut(s) | 1687, 1710, 1861, 2172, 3485, 5675 |
| BstZI | CGGCCG | 1 cut(s) | 250 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1623 |
| BsuI | GTATCC | 2 cut(s) | 3427, 5339 |
| BtgI | CCRYGG | 4 cut(s) | 216, 999, 1213, 3613 |
| BtgZI | GCGATG | 3 cut(s) | 560, 1167, 3090 |
| BtsI | GCAGTG | 6 cut(s) | 902, 978, 3796, 4255, 5349, 5478 |
| BveI | ACCTGC | 3 cut(s) | 537, 622, 1331 |
| CaiI | CAGNNNCTG | 4 cut(s) | 904, 2255, 2990, 3524 |
| CciI | TCATGA | 4 cut(s) | 742, 1117, 4597, 5690 |
| CciNI | GCGGCCGC | 1 cut(s) | 250 |
| CfoI | GCGC | 5 cut(s) | 93, 249, 821, 1328, 5594 |
| Cfr13I | GGNCC | 7 cut(s) | 159, 168, 493, 1556, 1733, 3173, 4565 |
| Cfr42I | CCGCGG | 1 cut(s) | 3616 |
| CseI | GACGC | 3 cut(s) | 655, 2792, 3654 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2148, 2183, 5250, 5285 |
| DraI | TTTAAA | 1 cut(s) | 2298 |
| EaeI | YGGCCR | 6 cut(s) | 204, 250, 771, 891, 4894, 5287 |
| EagI | CGGCCG | 1 cut(s) | 250 |
| EciI | GGCGGA | 3 cut(s) | 41, 417, 3903 |
| Ecl136II | GAGCTC | 1 cut(s) | 3117 |
| EclXI | CGGCCG | 1 cut(s) | 250 |
| Eco130I | CCWWGG | 6 cut(s) | 216, 1213, 1366, 1932, 5447, 5625 |
| Eco24I | GRGCYC | 3 cut(s) | 554, 3119, 5363 |
| Eco31I | GGTCTC | 2 cut(s) | 2382, 3627 |
| Eco32I | GATATC | 2 cut(s) | 3325, 5128 |
| Eco47I | GGWCC | 2 cut(s) | 1556, 4565 |
| Eco47III | AGCGCT | 1 cut(s) | 92 |
| Eco52I | CGGCCG | 1 cut(s) | 250 |
| Eco53kI | GAGCTC | 1 cut(s) | 3117 |
| Eco81I | CCTNAGG | 1 cut(s) | 1623 |
| Eco88I | CYCGRG | 3 cut(s) | 156, 165, 4150 |
| Eco91I | GGTNACC | 1 cut(s) | 4772 |
| EcoICRI | GAGCTC | 1 cut(s) | 3117 |
| EcoO109I | RGGNCCY | 4 cut(s) | 493, 1556, 3173, 4565 |
| EcoO65I | GGTNACC | 1 cut(s) | 4772 |
| EcoRI | GAATTC | 3 cut(s) | 265, 1996, 2913 |
| EcoRII | CCWGG | 7 cut(s) | 381, 1660, 2254, 3348, 4742, 5080, 5458 |
| EcoRV | GATATC | 2 cut(s) | 3325, 5128 |
| EcoT14I | CCWWGG | 6 cut(s) | 216, 1213, 1366, 1932, 5447, 5625 |
| EcoT22I | ATGCAT | 1 cut(s) | 3304 |
| EcoT38I | GRGCYC | 3 cut(s) | 554, 3119, 5363 |
| ErhI | CCWWGG | 6 cut(s) | 216, 1213, 1366, 1932, 5447, 5625 |
| Esp3I | CGTCTC | 2 cut(s) | 104, 5300 |
| FaqI | GGGAC | 5 cut(s) | 1073, 2045, 3260, 4725, 5554 |
| FauI | CCCGC | 3 cut(s) | 15, 2254, 5206 |
| FbaI | TGATCA | 3 cut(s) | 4678, 5323, 5338 |
| FblI | GTMKAC | 4 cut(s) | 949, 1447, 2471, 3008 |
| FriOI | GRGCYC | 3 cut(s) | 554, 3119, 5363 |
| GlaI | GCGC | 5 cut(s) | 92, 248, 820, 1327, 5593 |
| GsaI | CCCAGC | 2 cut(s) | 2791, 3597 |
| GsuI | CTGGAG | 3 cut(s) | 1281, 2173, 4082 |
| HaeII | RGCGCY | 1 cut(s) | 94 |
| HgaI | GACGC | 3 cut(s) | 655, 2792, 3654 |
| HhaI | GCGC | 5 cut(s) | 93, 249, 821, 1328, 5594 |
| Hin1I | GRCGYC | 2 cut(s) | 2077, 3646 |
| Hin6I | GCGC | 5 cut(s) | 91, 247, 819, 1326, 5592 |
| HinP1I | GCGC | 5 cut(s) | 91, 247, 819, 1326, 5592 |
| HincII | GTYRAC | 9 cut(s) | 130, 870, 1969, 2185, 2582, 3529, 3684, 4281, 4705 |
| HindII | GTYRAC | 9 cut(s) | 130, 870, 1969, 2185, 2582, 3529, 3684, 4281, 4705 |
| HindIII | AAGCTT | 5 cut(s) | 1913, 2367, 2573, 2878, 5606 |
| HpaI | GTTAAC | 1 cut(s) | 130 |
| Hpy99I | CGWCG | 4 cut(s) | 422, 2082, 3039, 3913 |
| HpyCH4IV | ACGT | 2 cut(s) | 2059, 2077 |
| HpySE526I | ACGT | 2 cut(s) | 2059, 2077 |
| Hsp92I | GRCGYC | 2 cut(s) | 2077, 3646 |
| HspAI | GCGC | 5 cut(s) | 91, 247, 819, 1326, 5592 |
| Kpn2I | TCCGGA | 1 cut(s) | 5089 |
| Ksp22I | TGATCA | 3 cut(s) | 4678, 5323, 5338 |
| KspAI | GTTAAC | 1 cut(s) | 130 |
| KspI | CCGCGG | 1 cut(s) | 3616 |
| LguI | GCTCTTC | 5 cut(s) | 2628, 3101, 3196, 4839, 5351 |
| LmnI | GCTCC | 7 cut(s) | 12, 298, 1135, 1346, 2987, 3890, 4723 |
| MaeII | ACGT | 2 cut(s) | 2059, 2077 |
| MbiI | CCGCTC | 3 cut(s) | 576, 2707, 5213 |
| MfeI | CAATTG | 3 cut(s) | 3956, 5019, 5049 |
| MflI | RGATCY | 6 cut(s) | 1687, 1710, 1861, 2172, 3485, 5675 |
| MlsI | TGGCCA | 1 cut(s) | 4896 |
| MluNI | TGGCCA | 1 cut(s) | 4896 |
| MmeI | TCCRAC | 4 cut(s) | 339, 1443, 3738, 4408 |
| Mox20I | TGGCCA | 1 cut(s) | 4896 |
| Mph1103I | ATGCAT | 1 cut(s) | 3304 |
| MroI | TCCGGA | 1 cut(s) | 5089 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2898, 2926, 5506 |
| MscI | TGGCCA | 1 cut(s) | 4896 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 795, 837, 971, 1523, 5037 |
| Msp20I | TGGCCA | 1 cut(s) | 4896 |
| MspA1I | CMGCKG | 5 cut(s) | 652, 824, 1067, 3615, 3709 |
| MspR9I | CCNGG | 9 cut(s) | 383, 1662, 2049, 2256, 3350, 4744, 5082, 5109, 5460 |
| MunI | CAATTG | 3 cut(s) | 3956, 5019, 5049 |
| Mva1269I | GAATGC | 4 cut(s) | 1380, 2326, 4759, 5506 |
| MvaI | CCWGG | 7 cut(s) | 383, 1662, 2256, 3350, 4744, 5082, 5460 |
| MvnI | CGCG | 3 cut(s) | 247, 249, 3615 |
| NciI | CCSGG | 2 cut(s) | 2049, 5109 |
| NcoI | CCATGG | 2 cut(s) | 216, 1213 |
| NlaIV | GGNNCC | 9 cut(s) | 14, 380, 514, 1516, 1878, 2711, 3093, 4566, 5677 |
| NmeAIII | GCCGAG | 2 cut(s) | 1921, 4960 |
| NmuCI | GTSAC | 7 cut(s) | 413, 900, 2275, 2531, 3458, 3969, 5003 |
| NotI | GCGGCCGC | 1 cut(s) | 250 |
| NsiI | ATGCAT | 1 cut(s) | 3304 |
| NspI | RCATGY | 5 cut(s) | 1142, 1871, 2217, 4293, 5592 |
| OliI | CACNNNNGTG | 1 cut(s) | 795 |
| PaeI | GCATGC | 2 cut(s) | 1142, 4293 |
| PaeR7I | CTCGAG | 1 cut(s) | 4150 |
| PagI | TCATGA | 4 cut(s) | 742, 1117, 4597, 5690 |
| PaqCI | CACCTGC | 1 cut(s) | 622 |
| PasI | CCCWGGG | 1 cut(s) | 2255 |
| PciI | ACATGT | 1 cut(s) | 2213 |
| PciSI | GCTCTTC | 5 cut(s) | 2628, 3101, 3196, 4839, 5351 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 76, 1031, 2065, 2917, 3908 |
| PctI | GAATGC | 4 cut(s) | 1380, 2326, 4759, 5506 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2898, 2926, 5506 |
| PflFI | GACNNNGTC | 1 cut(s) | 4709 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1015 |
| PpuMI | RGGWCCY | 2 cut(s) | 1556, 4565 |
| PscI | ACATGT | 1 cut(s) | 2213 |
| PsiI | TTATAA | 3 cut(s) | 1550, 4035, 4881 |
| Psp124BI | GAGCTC | 1 cut(s) | 3119 |
| Psp5II | RGGWCCY | 2 cut(s) | 1556, 4565 |
| Psp6I | CCWGG | 7 cut(s) | 381, 1660, 2254, 3348, 4742, 5080, 5458 |
| PspEI | GGTNACC | 1 cut(s) | 4772 |
| PspFI | CCCAGC | 2 cut(s) | 2787, 3593 |
| PspGI | CCWGG | 7 cut(s) | 381, 1660, 2254, 3348, 4742, 5080, 5458 |
| PspN4I | GGNNCC | 9 cut(s) | 14, 380, 514, 1516, 1878, 2711, 3093, 4566, 5677 |
| PspPI | GGNCC | 7 cut(s) | 159, 168, 493, 1556, 1733, 3173, 4565 |
| PspPPI | RGGWCCY | 2 cut(s) | 1556, 4565 |
| PspXI | VCTCGAGB | 1 cut(s) | 4150 |
| PstI | CTGCAG | 3 cut(s) | 1792, 3508, 3586 |
| PstNI | CAGNNNCTG | 4 cut(s) | 904, 2255, 2990, 3524 |
| PsuI | RGATCY | 6 cut(s) | 1687, 1710, 1861, 2172, 3485, 5675 |
| PsyI | GACNNNGTC | 1 cut(s) | 4709 |
| PvuII | CAGCTG | 3 cut(s) | 652, 1067, 3709 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 795, 837, 971, 1523, 5037 |
| SacI | GAGCTC | 1 cut(s) | 3119 |
| SacII | CCGCGG | 1 cut(s) | 3616 |
| SapI | GCTCTTC | 5 cut(s) | 2628, 3101, 3196, 4839, 5351 |
| Sau96I | GGNCC | 7 cut(s) | 159, 168, 493, 1556, 1733, 3173, 4565 |
| ScaI | AGTACT | 3 cut(s) | 694, 2240, 4059 |
| ScrFI | CCNGG | 9 cut(s) | 383, 1662, 2049, 2256, 3350, 4744, 5082, 5109, 5460 |
| SfcI | CTRYAG | 7 cut(s) | 1425, 1788, 2982, 3441, 3504, 3582, 5493 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 167 |
| Sfr274I | CTCGAG | 1 cut(s) | 4150 |
| Sfr303I | CCGCGG | 1 cut(s) | 3616 |
| SgrBI | CCGCGG | 1 cut(s) | 3616 |
| SinI | GGWCC | 2 cut(s) | 1556, 4565 |
| SlaI | CTCGAG | 1 cut(s) | 4150 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 795, 837, 971, 1523, 5037 |
| SmlI | CTYRAG | 4 cut(s) | 2591, 4150, 4574, 5381 |
| SmoI | CTYRAG | 4 cut(s) | 2591, 4150, 4574, 5381 |
| SpeI | ACTAGT | 1 cut(s) | 1219 |
| SphI | GCATGC | 2 cut(s) | 1142, 4293 |
| SspI | AATATT | 3 cut(s) | 1825, 4538, 5253 |
| SstI | GAGCTC | 1 cut(s) | 3119 |
| StyD4I | CCNGG | 9 cut(s) | 381, 1660, 2047, 2254, 3348, 4742, 5080, 5107, 5458 |
| StyI | CCWWGG | 6 cut(s) | 216, 1213, 1366, 1932, 5447, 5625 |
| TaiI | ACGT | 2 cut(s) | 2062, 2080 |
| TaqII | GACCGA | 2 cut(s) | 1747, 3651 |
| TauI | GCSGC | 9 cut(s) | 188, 191, 252, 255, 258, 776, 824, 3615, 5194 |
| TseFI | GTSAC | 7 cut(s) | 413, 900, 2275, 2531, 3458, 3969, 5003 |
| Tsp45I | GTSAC | 7 cut(s) | 413, 900, 2275, 2531, 3458, 3969, 5003 |
| TspGWI | ACGGA | 4 cut(s) | 386, 3897, 4442, 5324 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4709 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1015 |
| VneI | GTGCAC | 2 cut(s) | 2754, 5442 |
| VpaK11BI | GGWCC | 2 cut(s) | 1556, 4565 |
| XbaI | TCTAGA | 1 cut(s) | 4990 |
| XceI | RCATGY | 5 cut(s) | 1142, 1871, 2217, 4293, 5592 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 214, 880, 4721, 5435 |
| XhoI | CTCGAG | 1 cut(s) | 4150 |
| XmaJI | CCTAGG | 2 cut(s) | 1366, 5447 |
| XmiI | GTMKAC | 4 cut(s) | 949, 1447, 2471, 3008 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2898, 2926, 5506 |
| ZraI | GACGTC | 1 cut(s) | 2078 |
| ZrmI | AGTACT | 3 cut(s) | 694, 2240, 4059 |
| Zsp2I | ATGCAT | 1 cut(s) | 3304 |