Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Forward (+)

40278468 .. 40279466

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1173800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTGGGCTTGGATCTGCCAGCAGGGGCATTAGGGGAGGCAGAGATAGACAAGGACGTCCTATTTTTGGCAGTTCTAGTGATCCTCCTAAGCTATTCAGAGACAGCTTGTGCAGGATGAGGATGATGATGAAAGGTATGCTGGGAGTGATTTTGTATCCAGTGAAGGTAGCAGGCTATGGAGTGATATTTACACTATCACATACCAGAGGCCAGACAATCAAACTGACAGGGCATCTGTTGGAGGTGCAAGTCCTACAACTGCAACAAAAATCTGGGAAATCTGCCTCTGCTTCCAATTCCAACTCCGAATCTCAATTGCATCGAATGTCACTTTTGGATAGTATTTTGCAGGGAGAGCTTCCTTGTGATTTAGAAAAATCTAATCCTACTTATAATATACTGGCACTACTGCGTGTACTAGAGGGCTTGAATCAGCTTGCTCCTCGCCTGAGAGCTCAGATAGTTTCCGACAGTTTTGCGGAGGGTAAAGTTTTGAATTTGGATGACTTGAGTACAACTGGTGCTAGAGTTTTTCCTGAGGAATTTATTAACAGCAAACTCACTCCCAAATTAGCCCGGCAAATTCAAGATGCCCTTGCATTGTGCAGTGGGAGTCTTCCTTCTTGGTGTTACCAGTTGACAAAAGCATGTCCATTTTTGTTTCCTTTTGAGACTCGGAGACAGTATTTCTATTCAACAGCTTTTGGATTGTCTCGCGCTCTGTACCGTCTTCAGCAGCAGCAGGGTGCTGATGGTCATGCAAATGAACGAGAGGTGAGAGTTGGGAGATTGCAACGGCAGAAAGTCCGCGTTTCCCGAAACCGGATTTTGGATTCTGCTGCAAAAGTAATGGAGATGTATTCCAGCCAAAAATCTGTGCTTGAAGTAGAATATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

302

Amino Acids

33.68

Weight (kDa)

9.84

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AasI	GACNNNNNNGTC	1 cut(s)	57
AatII	GACGTC	1 cut(s)	61
AccII	CGCG	2 cut(s)	720, 813
AciI	CCGC	2 cut(s)	482, 811
AclWI	GGATC	2 cut(s)	22, 77
AcsI	RAATTY	3 cut(s)	499, 545, 585
AcuI	CTGAAG	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	3 cut(s)	420, 517, 728
AfiI	CCNNNNNNNGG	3 cut(s)	68, 825, 832
AgsI	TTSAA	5 cut(s)	433, 499, 590, 699, 887
AluBI	AGCT	6 cut(s)	94, 108, 361, 439, 458, 704
AluI	AGCT	6 cut(s)	94, 108, 361, 439, 458, 704
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	4 cut(s)	96, 668, 676, 720
AlwI	GGATC	2 cut(s)	22, 77
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	739, 742, 842
ApoI	RAATTY	3 cut(s)	499, 545, 585
AspLEI	GCGC	1 cut(s)	722
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	790
AxyI	CCTNAGG	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	611, 725
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	3 cut(s)	751, 754, 829
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	1 cut(s)	815
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciVI	GTATCC	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	96, 668, 676, 720
BfaI	CTAG	3 cut(s)	78, 422, 528
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	740, 743, 843
BlsI	GCNGC	3 cut(s)	741, 744, 844
Bme1390I	CCNGG	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	3 cut(s)	244, 331, 583
BpiI	GAAGAC	2 cut(s)	611, 725
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 825, 832
Bse1I	ACTGG	4 cut(s)	161, 408, 526, 637
Bse21I	CCTNAGG	1 cut(s)	540
BseGI	GGATG	3 cut(s)	123, 129, 511
BseLI	CCNNNNNNNGG	3 cut(s)	68, 825, 832
BseMII	CTCAG	3 cut(s)	443, 473, 531
BseNI	ACTGG	4 cut(s)	161, 408, 526, 637
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	751, 754, 829
BseYI	CCCAGC	2 cut(s)	5, 142
BsgI	GTGCAG	2 cut(s)	133, 628
Bsh1236I	CGCG	2 cut(s)	720, 813
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	580, 826
BslI	CCNNNNNNNGG	3 cut(s)	68, 825, 832
BsmAI	GTCTC	4 cut(s)	96, 668, 676, 720
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	14, 82
BspACI	CCGC	2 cut(s)	482, 811
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	3 cut(s)	444, 472, 532
BspFNI	CGCG	2 cut(s)	720, 813
BspPI	GGATC	2 cut(s)	22, 77
BsrI	ACTGG	4 cut(s)	161, 408, 526, 637
BssMI	GATC	2 cut(s)	14, 82
BssNI	GRCGYC	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	476, 687, 731
BstACI	GRCGYC	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	22, 175, 441
BstDEI	CTNAG	4 cut(s)	90, 452, 459, 540
BstF5I	GGATG	3 cut(s)	123, 129, 511
BstFNI	CGCG	2 cut(s)	720, 813
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	2 cut(s)	17, 85
BstMAI	GTCTC	4 cut(s)	96, 668, 676, 720
BstMBI	GATC	2 cut(s)	14, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	578
BstUI	CGCG	2 cut(s)	720, 813
BstV1I	GCAGC	3 cut(s)	751, 754, 829
BstV2I	GAAGAC	2 cut(s)	611, 725
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	123, 129, 511
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	168, 616
Cac8I	GCNNGC	3 cut(s)	22, 175, 441
CfoI	GCGC	1 cut(s)	722
Csp6I	GTAC	3 cut(s)	419, 516, 727
CviAII	CATG	2 cut(s)	651, 761
CviQI	GTAC	3 cut(s)	419, 516, 727
DdeI	CTNAG	4 cut(s)	90, 452, 459, 540
DpnI	GATC	2 cut(s)	16, 84
DpnII	GATC	2 cut(s)	14, 82
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	719
Eco81I	CCTNAGG	1 cut(s)	540
EcoICRI	GAGCTC	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	460
FaeI	CATG	2 cut(s)	654, 764
FaiI	YATR	7 cut(s)	140, 180, 204, 396, 401, 652, 762
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	2 cut(s)	650, 760
Fnu4HI	GCNGC	3 cut(s)	740, 743, 843
FokI	GGATG	3 cut(s)	130, 136, 518
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	740, 743, 843
FspBI	CTAG	3 cut(s)	78, 422, 528
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	3 cut(s)	740, 743, 843
GsaI	CCCAGC	2 cut(s)	9, 146
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	580, 826
HhaI	GCGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	654, 764
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	5 cut(s)	311, 433, 616, 676, 836
HpaII	CCGG	2 cut(s)	580, 826
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	2 cut(s)	419, 642
Hpy188I	TCNGA	5 cut(s)	101, 310, 462, 472, 681
Hpy188III	TCNNGA	3 cut(s)	539, 590, 819
Hpy8I	GTNNAC	2 cut(s)	419, 642
HpyAV	CCTTC	2 cut(s)	160, 633
HpyCH4III	ACNGT	3 cut(s)	476, 687, 731
HpyCH4IV	ACGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	4 cut(s)	90, 452, 459, 540
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	654, 764
HspAI	GCGC	1 cut(s)	720
Kzo9I	GATC	2 cut(s)	14, 82
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	3 cut(s)	751, 754, 829
LweI	GCATC	3 cut(s)	244, 331, 583
MaeI	CTAG	3 cut(s)	78, 422, 528
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	330, 632
MalI	GATC	2 cut(s)	16, 84
MboI	GATC	2 cut(s)	14, 82
MboII	GAAGA	2 cut(s)	611, 725
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	6 cut(s)	298, 317, 499, 545, 572, 585
MlyI	GAGTC	2 cut(s)	625, 670
MmeI	TCCRAC	3 cut(s)	222, 327, 495
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	765
MspI	CCGG	2 cut(s)	580, 826
MspR9I	CCNGG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	720, 813
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	2 cut(s)	14, 82
NlaIII	CATG	2 cut(s)	654, 764
NmuCI	GTSAC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	311, 433, 836
PkrI	GCNGC	3 cut(s)	741, 744, 844
PleI	GAGTC	2 cut(s)	624, 670
PpsI	GAGTC	2 cut(s)	624, 670
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	460
PspFI	CCCAGC	2 cut(s)	5, 142
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	3 cut(s)	420, 517, 728
RsaNI	GTAC	3 cut(s)	419, 516, 727
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	3 cut(s)	740, 743, 843
Sau3AI	GATC	2 cut(s)	14, 82
SchI	GAGTC	2 cut(s)	625, 670
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	3 cut(s)	244, 331, 583
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	6 cut(s)	298, 317, 499, 545, 572, 585
SsiI	CCGC	2 cut(s)	482, 811
SspI	AATATT	1 cut(s)	896
SspMI	CTAG	3 cut(s)	78, 422, 528
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	578
TaaI	ACNGT	3 cut(s)	476, 687, 731
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	325
TasI	AATT	6 cut(s)	298, 317, 499, 545, 572, 585
TatI	WGTACW	2 cut(s)	418, 515
TfiI	GAWTC	3 cut(s)	311, 433, 836
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	168, 616
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	3 cut(s)	739, 742, 842
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	146, 783
TspRI	CASTG	2 cut(s)	168, 616
XapI	RAATTY	3 cut(s)	499, 545, 585
XceI	RCATGY	1 cut(s)	654
XspI	CTAG	3 cut(s)	78, 422, 528
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.