Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000303.1

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Reverse (-)

86302 .. 96090

Gene Structure 9789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000303.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5679 bp

atggaaactcggagccggaagcgggcggaggccacctcatcagccccttcatcatcaacttcgtctggtcgcaccactcgttccaccaagcgctctcgtctctcctcctcttcgctctcttcttctgttaacccctcaccaatctccactcgctctcgggcctctagggccaacaatcaagacaccgccgccttcgccgttgcagcatcggccaccaccgcgatggactccaccaacgaatcgtccggctcgcgcggccgccgcagtaggaattccgataaggatgataaggggaaggagaaggagcacgagagggagagggagagggagagagagagggtgttggatagagaaacggagaggaacctggggttgaacatggacggcggaggaaatggtgacgacgatgataatgatagcgaaggtggggttgggattttgcatcagaatttgacttcggctagtagtgcccttcaggggcttcttaggaagatcggcgccggattggatgacctgcttccatcttcggcgatgggctctgcttcgtcatcccaccagagcggaaggctgaagaagattctgtctgggttgcgagctgatggggaagaaggaaagcaggtggaggctttgacgcagctgtgtgaaatgctttcgattggtactgaggaatcgctcagtactttttcagtggattcatttgtgcctgtgcttgtggggttgcttaatcatgagagcaatcctgatattatgcttctggcagccagagcacttactcatctttgtgatgtgcttccttcgtcctgcgctgcagttgtgcattatggtgcggtttctatcttctgtgcaaggttgttgaccatagagtacatggacttggccgaacagtcactgcaagctctgaagaaaatatctcaggaacacccaactgcctgtctacgagctggtgctcttatggcagtgctttcttatctggatttcttttccacaggagtccagcgtgtggcattatcaactgctgcgaatatgtgcaagaaacttccgtcagatgcagctgactttgtgatggaagctgtcccattactgacaaatcttctgcaatatcatgatgctaaggttttggagcatgcctctgtatgtctgactcgaattgctgaatcatttgcttcatcgcctgacaaacttgacgaactatgcaaccatggactagttgctcaatctgcatcccttatttctaccagcaattctggaggtggtcagtcatctctcagtacacctacttatacgggcttaatccggctactttcaacctgcgcaagtggttctccattaggagctaaaactttgctttcgctagggataagtggcattctcaaagatgtactttcgggttcaggcagttcttccaactctacagtttctcctgctctaagcagaccagcagaacagatttttgagattgtcaatcttgcaaatgagctgcttcctccactcccacaaggaaccatctccatgccgtccagtttcaatttgtttatgaaaggacctattgtgaaaaagtcatctggtagtagttctgggaagccagaagataccagtggaagcgctcctgaggtttcagctcgtgagaaattattgaacgaacagcctggtcttcttcagcaatttggaatggatctccttcctgttttaatacagatttacggctctagtgtaaatggccctgttcgccacaaatgtctatcggtcatcgggaagttaatgtacttcagccctgcagagatgattgagtctttgttaagtatgacaaatattgcaagtctcttagccggtgttttagcatggaaagatccgcatgtcttggttcctgctctccaaattgccgagatactcatggagaagcttcccaagactttctacaaggtgtttgtcagagaaggtgtggttcatgctgttgcccaacttattttagctggtactctgaattcagttacttcacaagtctcttctgctgaaaaggacaatgattctgtgccgggatcatcacgttctaggcgttatagacgtcgcaacagtaacccaaatccagatggaaattcattggaagaatcgaagattcctgcttcggtaaccgttggttcgcctccaagttcagtggagatcccaactgtcaactccagccttcgtgtagctgtgagtacatgtgcaaaagcgtttaaggacaagtacttcccttcagaccctggggcgggtgaagttggtgtcaccgatgatctattacatttaaaaaatctgtgtgtgaggttgaatgctggtgtggatgacccaaaaacaaaagctaagggaaaatcaaaagcttctgggtctcgcttagttgatagttcggcaaatagggaagagtatttgattggtgttgtagccgagatggtagccgaactaagcaaaggggatggtgtgtctacctttgagttcataggtagtggtgttgttgcagctttgctgaactatttttcttgtggtcacttctcgaaggagagaatttctgaagctaatttgcccaagcttcgtcaacaagccctcaagaggtttaagtcatttgttgctgttgctcttcctttcagtattgatgaaggaagagtagccccaatgactatcatagttcagaaactacaaggtgctttgtcctctttagagcggttccctgttgtgctgagtcattcatctaggtcatctactggaagtgcacgcctctcctctggacttagtgcattatcccagccctttaagttgcgtctatgtcgagcacaaggagaaaaggctctccgagattattcatcgaatgttgtactgattgacccattagcaagcttagctgctgttgaagagtttctttggcctcgaattcagcgaagtgattctggtcagaaggctgctgcgtctgctggaaattcggaatctggaaatactcctacaggagctggtgcttcatctctgtctacttcaaatcctgcttctaccaatcgtcgccattcaactcgttccagaacatctgtaaatataggcgatgctgctaagagggaaccttcacaagagaagagcacgagctcatctaaaggaaagggtaaagcggttttgaaaccttctcaggaggaagcaagaggccctcaaacaaggaacgcagctcgcagaagagcagctcttgataaagatgttcaaatgaaacctgtgaatggggacacaacttctgaggatgaggaattggatgtatctcctgctgagatcgatgatgcattggttattgaagatgatgatatctcagacgaagaagatgatgaccaggatgatgttctcagagatgactctcttcctgtttgcacgccagacaaagtacatgacgtgaaattgggagactcggctgaggatactactgtagcttctgcaacaagtgacagccagactaaccctgcttctggatctagtagcagagctgctgcagttagaggatcagattctgttgaacacaggagtagtaattcttatggttctaagggtgcaatgtcgtttgctgctgcagcaatggctgggcttgggtcgggtagccgcggtatcaggggaggtagagaccgacaaggacgccctctttttggtggttcgagtgatcctcccaagttgacctttacctctgggggaaagcagctgaatcggcatttgactatctatcaggccattcagagacagctagtgttggatgaggatgatgatgagagatatgctggcagtgatctaatgtcaagtgatggtagcaggctgtggagtgatatttacactatcacctaccagagggcagacagtcaagctgagagggcatctgttggaggggcaagttcaacgcctccgtcgaaatctagcaaatcaggttcttccaattctaattccgattcccaactgcatcggatgtcacttcttgatagcattttgcagggagaacttccttgtgatttggaaaaatctaatcctacatataatatactggcactactgcgagtactggagggcttgaatcagctcgcaccccgtttgagaactcagatagtttctgacagttttgctgaggggaaaatctcatatttggatgacttgagtacaactggttctagggtcgtttctgaggaatttattaacagcaaactcactcccaaattagcccgacagatacaagatgctcttgcattgtgcagtggcagtcttccttcatggtgctatcagttgacgaaagcatgcccgtttttgtttccttttgagactcgaagacagtatttctactcgactgcttttggattatctcgtgcgctgtatcgtcttcagcagcagcagggtgctgatggtcatggatcaaacgaacgagaggtgagggttggaagattgcaacgtcaaaaagtccgtgtctctcgtaaccggattttggactccgctgcaaaagtaatggagatgtattcgagccagaagtctgtacttgaagtagaatattttggtgaggtgggcactgggttgggtcctacacttgagttctatacgcttctaagtcatgacttacagaaagttagacttggtatgtggaggtcaaattcttcattggagaaagcaccaatggatattgatggagatgatcagaaagatgggaaaatcaatgttgacattgtccaagctcctcttgggttgtttcctcgtccctggcctccaaatactgctgcttctgatggtaaccaattttctaaagttattgagtatttccggttggtcgggcgtgtaatggcgaaggctcttcaagatgggaggctattagacttaccactatcaacagcattttataaactattgcttggccaagagcttgatttacatgatgttctttcctttgatgccgagcttgggaagactttgcaagaattacataaccttgttagccggaaactatatctagaatcaaatggtgacaatcgcgatgcaattactgaattgcgttttcgtggggcttcaattgatgatctctgcttagattttacgcttcctggttatccagagtacgtgttgaaacccggagatgaaaatgttgatatcaataacttggaagaatatatatctttagttgttgatgcaacagttaagactggaataatgcggcagacagaagcatttagagcggggttcaatcaggtgtttgatatatcatctttacaaatattcaccccacatgaattggactatctgctttgtggccgtagagagctgtgggagacggagactcttgctgatcacataaagtttgatcatggatacactgcgaagagccctgcaatacttaatttgcttgagatcatgggtgagttcacccctgagcagcagcgtgccttttgccagtttgttactggtgcacctaggcttccccctggtggtttggcagtgctgaatccaaagctgaccattgtgagaaagcattcttcaactgcaaataatgcagcagccaatgggactggggcttcagaattggcagatgatgatctgccaagtgttatgacatgcgctaattacctaaagcttcctccttactctaccaaggatattatgtacaagaaactactctatgcaatcaatgaagggcagggatcctttgatttgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1892

Amino Acids

203.66

Weight (kDa)

5.94

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4866
AarI	CACCTGC	1 cut(s)	607
AatII	GACGTC	1 cut(s)	2065
Acc16I	TGCGCA	1 cut(s)	1312
Acc36I	ACCTGC	3 cut(s)	522, 607, 1316
AccB1I	GGYRCC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	1000
AccBSI	CCGCTC	3 cut(s)	561, 2692, 5198
AccI	GTMKAC	3 cut(s)	934, 2456, 2993
AccII	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
AcoI	YGGCCR	5 cut(s)	210, 256, 876, 4879, 5272
AcsI	RAATTY	9 cut(s)	271, 448, 1981, 2092, 2535, 2898, 2944, 4169, 4621
AcuI	CTGAAG	9 cut(s)	458, 590, 920, 1640, 1750, 2217, 2562, 4343, 5520
AcyI	GRCGYC	3 cut(s)	498, 2062, 3631
AfeI	AGCGCT	2 cut(s)	92, 1603
AflIII	ACRYGT	2 cut(s)	2198, 5082
AhlI	ACTAGT	1 cut(s)	1204
AjiI	CACGTC	1 cut(s)	3394
AjnI	CCWGG	7 cut(s)	366, 1645, 2239, 3333, 4727, 5065, 5443
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw21I	GWGCWC	8 cut(s)	309, 769, 949, 2743, 2803, 3098, 3104, 5431
Alw44I	GTGCAC	2 cut(s)	2739, 5427
AlwNI	CAGNNNCTG	4 cut(s)	889, 2240, 2975, 3509
Ama87I	CYCGRG	1 cut(s)	156
Aor51HI	AGCGCT	2 cut(s)	92, 1603
ApaLI	GTGCAC	2 cut(s)	2739, 5427
ApoI	RAATTY	9 cut(s)	271, 448, 1981, 2092, 2535, 2898, 2944, 4169, 4621
Asp700I	GAANNNNTTC	3 cut(s)	2883, 2911, 5491
AspA2I	CCTAGG	1 cut(s)	5432
AspLEI	GCGC	8 cut(s)	93, 255, 500, 806, 1313, 1604, 4348, 5579
AspS9I	GGNCC	6 cut(s)	159, 168, 1541, 1718, 3158, 4550
AsuC2I	CCSGG	2 cut(s)	2034, 5094
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	1541, 4550
AvrII	CCTAGG	1 cut(s)	5432
AxyI	CCTNAGG	1 cut(s)	1608
BaeGI	GKGCMC	4 cut(s)	472, 2743, 4541, 5431
BaeI	ACNNNNGTAYC	2 cut(s)	3411, 3444
BalI	TGGCCA	1 cut(s)	4881
BamHI	GGATCC	1 cut(s)	5660
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	3 cut(s)	539, 3104, 5348
BarI	GAAGNNNNNNTAC	2 cut(s)	1745, 1777
BauI	CACGAG	4 cut(s)	308, 1620, 3097, 4341
BbsI	GAAGAC	5 cut(s)	1643, 4235, 4312, 4349, 4937
Bbv12I	GWGCWC	8 cut(s)	309, 769, 949, 2743, 2803, 3098, 3104, 5431
BbvCI	CCTCAGC	2 cut(s)	3414, 4107
BceAI	ACGGC	5 cut(s)	182, 400, 1498, 1717, 5259
BcgI	CGANNNNNNTGC	2 cut(s)	3680, 3714
BciT130I	CCWGG	7 cut(s)	368, 1647, 2241, 3335, 4729, 5067, 5445
BciVI	GTATCC	2 cut(s)	3412, 5324
BclI	TGATCA	3 cut(s)	4663, 5308, 5323
BcnI	CCSGG	2 cut(s)	2034, 5094
BcuI	ACTAGT	1 cut(s)	1204
BfmI	CTRYAG	7 cut(s)	807, 1410, 1773, 2967, 3426, 3489, 3567
BfoI	RGCGCY	3 cut(s)	94, 501, 1605
BfuAI	ACCTGC	3 cut(s)	522, 607, 1316
BfuI	GTATCC	2 cut(s)	3412, 5324
BglI	GCCNNNNNGGC	1 cut(s)	167
BlnI	CCTAGG	1 cut(s)	5432
BlpI	GCTNAGC	1 cut(s)	2866
BmcAI	AGTACT	3 cut(s)	679, 2225, 4044
Bme1390I	CCNGG	9 cut(s)	368, 1647, 2034, 2241, 3335, 4729, 5067, 5094, 5445
Bme18I	GGWCC	2 cut(s)	1541, 4550
BmeT110I	CYCGRG	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	3394
BmgT120I	GGNCC	6 cut(s)	159, 168, 1541, 1718, 3158, 4550
BmiI	GGNNCC	9 cut(s)	14, 365, 499, 1501, 1863, 2696, 3078, 4551, 5662
BmrFI	CCNGG	9 cut(s)	368, 1647, 2034, 2241, 3335, 4729, 5067, 5094, 5445
BmrI	ACTGGG	2 cut(s)	4551, 5538
BmuI	ACTGGG	2 cut(s)	4551, 5538
BpiI	GAAGAC	5 cut(s)	1643, 4235, 4312, 4349, 4937
BplI	GAGNNNNNCTC	6 cut(s)	20, 52, 1112, 1144, 3643, 3675
BpmI	CTGGAG	3 cut(s)	1266, 2158, 4067
Bpu10I	CCTNAGC	5 cut(s)	1110, 2337, 3414, 4107, 5391
Bpu1102I	GCTNAGC	1 cut(s)	2866
BpuEI	CTTGAG	4 cut(s)	2561, 4156, 4580, 5387
BpuMI	CCSGG	2 cut(s)	2034, 5094
Bsa29I	ATCGAT	1 cut(s)	3279
BsaAI	YACGTR	1 cut(s)	5083
BsaBI	GATNNNNATC	1 cut(s)	5553
BsaHI	GRCGYC	3 cut(s)	498, 2062, 3631
BsaI	GGTCTC	2 cut(s)	2367, 3612
BsaJI	CCNNGG	9 cut(s)	367, 1198, 2239, 2240, 3598, 4727, 5432, 5443, 5610
BsaWI	WCCGGW	2 cut(s)	4452, 4788
BsaXI	ACNNNNNCTCC	2 cut(s)	1402, 1432
Bse118I	RCCGGY	1 cut(s)	1826
Bse21I	CCTNAGG	1 cut(s)	1608
Bse3DI	GCAATG	2 cut(s)	3558, 3579
Bse8I	GATNNNNATC	1 cut(s)	5553
BseBI	CCWGG	7 cut(s)	368, 1647, 2241, 3335, 4729, 5067, 5445
BseCI	ATCGAT	1 cut(s)	3279
BseDI	CCNNGG	9 cut(s)	367, 1198, 2239, 2240, 3598, 4727, 5432, 5443, 5610
BseJI	GATNNNNATC	1 cut(s)	5553
BseMI	GCAATG	2 cut(s)	3558, 3579
BseRI	GAGGAG	4 cut(s)	94, 97, 2740, 4695
BseSI	GKGCMC	4 cut(s)	472, 2743, 4541, 5431
BseX3I	CGGCCG	1 cut(s)	256
BseYI	CCCAGC	2 cut(s)	2772, 3578
BsgI	GTGCAG	1 cut(s)	4252
Bsh1236I	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
Bsh1285I	CGRYCG	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	497
BshVI	ATCGAT	1 cut(s)	3279
BsiEI	CGRYCG	1 cut(s)	259
BsiHKAI	GWGCWC	8 cut(s)	309, 769, 949, 2743, 2803, 3098, 3104, 5431
BsiHKCI	CYCGRG	1 cut(s)	156
BslFI	GGGAC	4 cut(s)	1058, 3245, 4710, 5539
BsmBI	CGTCTC	2 cut(s)	104, 5285
BsmFI	GGGAC	4 cut(s)	1058, 3245, 4710, 5539
BsmI	GAATGC	3 cut(s)	1365, 2311, 5491
Bso31I	GGTCTC	2 cut(s)	2367, 3612
BsoBI	CYCGRG	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	5622
Bsp1720I	GCTNAGC	1 cut(s)	2866
Bsp19I	CCATGG	1 cut(s)	1198
Bsp68I	TCGCGA	1 cut(s)	4998
BspDI	ATCGAT	1 cut(s)	3279
BspFNI	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
BspHI	TCATGA	4 cut(s)	727, 1102, 4582, 5675
BspLI	GGNNCC	9 cut(s)	14, 365, 499, 1501, 1863, 2696, 3078, 4551, 5662
BspMAI	CTGCAG	4 cut(s)	811, 1777, 3493, 3571
BspMI	ACCTGC	3 cut(s)	522, 607, 1316
BspQI	GCTCTTC	5 cut(s)	2613, 3086, 3181, 4824, 5336
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	2 cut(s)	2367, 3612
BsrBI	CCGCTC	3 cut(s)	561, 2692, 5198
BsrDI	GCAATG	2 cut(s)	3558, 3579
BsrFI	RCCGGY	1 cut(s)	1826
BsrGI	TGTACA	1 cut(s)	5622
BssAI	RCCGGY	1 cut(s)	1826
BssECI	CCNNGG	9 cut(s)	367, 1198, 2239, 2240, 3598, 4727, 5432, 5443, 5610
BssNI	GRCGYC	3 cut(s)	498, 2062, 3631
BssSI	CACGAG	4 cut(s)	308, 1620, 3097, 4341
BssT1I	CCWWGG	3 cut(s)	1198, 5432, 5610
Bst2BI	CACGAG	4 cut(s)	308, 1620, 3097, 4341
Bst2UI	CCWGG	7 cut(s)	368, 1647, 2241, 3335, 4729, 5067, 5445
BstACI	GRCGYC	3 cut(s)	498, 2062, 3631
BstAPI	GCANNNNNTGC	1 cut(s)	5510
BstAUI	TGTACA	1 cut(s)	5622
BstBAI	YACGTR	1 cut(s)	5083
BstDSI	CCRYGG	2 cut(s)	1198, 3598
BstEII	GGTNACC	2 cut(s)	2125, 4757
BstENI	CCTNNNNNAGG	1 cut(s)	3835
BstFNI	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
BstH2I	RGCGCY	3 cut(s)	94, 501, 1605
BstHHI	GCGC	8 cut(s)	93, 255, 500, 806, 1313, 1604, 4348, 5579
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	7 cut(s)	368, 1647, 2241, 3335, 4729, 5067, 5445
BstNSI	RCATGY	5 cut(s)	1127, 1856, 2202, 4278, 5577
BstPI	GGTNACC	2 cut(s)	2125, 4757
BstSCI	CCNGG	9 cut(s)	366, 1645, 2032, 2239, 3333, 4727, 5065, 5092, 5443
BstSFI	CTRYAG	7 cut(s)	807, 1410, 1773, 2967, 3426, 3489, 3567
BstSLI	GKGCMC	4 cut(s)	472, 2743, 4541, 5431
BstUI	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
BstV2I	GAAGAC	5 cut(s)	1643, 4235, 4312, 4349, 4937
BstX2I	RGATCY	5 cut(s)	1672, 1846, 2157, 3470, 5660
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	5 cut(s)	1672, 1846, 2157, 3470, 5660
BstZI	CGGCCG	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	3279
Bsu36I	CCTNAGG	1 cut(s)	1608
BsuI	GTATCC	2 cut(s)	3412, 5324
BsuTUI	ATCGAT	1 cut(s)	3279
BtgI	CCRYGG	2 cut(s)	1198, 3598
BtgZI	GCGATG	5 cut(s)	236, 545, 1152, 3075, 5013
BtrI	CACGTC	1 cut(s)	3394
BtsI	GCAGTG	6 cut(s)	887, 963, 3781, 4240, 5334, 5463
BtuMI	TCGCGA	1 cut(s)	4998
BveI	ACCTGC	3 cut(s)	522, 607, 1316
CaiI	CAGNNNCTG	4 cut(s)	889, 2240, 2975, 3509
CciI	TCATGA	4 cut(s)	727, 1102, 4582, 5675
CciNI	GCGGCCGC	1 cut(s)	256
CfoI	GCGC	8 cut(s)	93, 255, 500, 806, 1313, 1604, 4348, 5579
Cfr10I	RCCGGY	1 cut(s)	1826
Cfr13I	GGNCC	6 cut(s)	159, 168, 1541, 1718, 3158, 4550
Cfr42I	CCGCGG	1 cut(s)	3601
ClaI	ATCGAT	1 cut(s)	3279
CseI	GACGC	4 cut(s)	640, 2777, 2922, 3639
CspCI	CAANNNNNGTGG	4 cut(s)	2133, 2168, 5235, 5270
DinI	GGCGCC	1 cut(s)	499
DraI	TTTAAA	1 cut(s)	2283
EaeI	YGGCCR	5 cut(s)	210, 256, 876, 4879, 5272
EagI	CGGCCG	1 cut(s)	256
EciI	GGCGGA	2 cut(s)	41, 402
Ecl136II	GAGCTC	1 cut(s)	3102
EclXI	CGGCCG	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	1198, 5432, 5610
Eco24I	GRGCYC	3 cut(s)	539, 3104, 5348
Eco31I	GGTCTC	2 cut(s)	2367, 3612
Eco32I	GATATC	2 cut(s)	3310, 5113
Eco47I	GGWCC	2 cut(s)	1541, 4550
Eco47III	AGCGCT	2 cut(s)	92, 1603
Eco52I	CGGCCG	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	3102
Eco57I	CTGAAG	9 cut(s)	458, 590, 920, 1640, 1750, 2217, 2562, 4343, 5520
Eco81I	CCTNAGG	1 cut(s)	1608
Eco88I	CYCGRG	1 cut(s)	156
Eco91I	GGTNACC	2 cut(s)	2125, 4757
EcoICRI	GAGCTC	1 cut(s)	3102
EcoNI	CCTNNNNNAGG	1 cut(s)	3835
EcoO109I	RGGNCCY	3 cut(s)	1541, 3158, 4550
EcoO65I	GGTNACC	2 cut(s)	2125, 4757
EcoRI	GAATTC	3 cut(s)	271, 1981, 2898
EcoRII	CCWGG	7 cut(s)	366, 1645, 2239, 3333, 4727, 5065, 5443
EcoRV	GATATC	2 cut(s)	3310, 5113
EcoT14I	CCWWGG	3 cut(s)	1198, 5432, 5610
EcoT22I	ATGCAT	1 cut(s)	3289
EcoT38I	GRGCYC	3 cut(s)	539, 3104, 5348
EgeI	GGCGCC	1 cut(s)	499
EheI	GGCGCC	1 cut(s)	499
ErhI	CCWWGG	3 cut(s)	1198, 5432, 5610
Esp3I	CGTCTC	2 cut(s)	104, 5285
FaqI	GGGAC	4 cut(s)	1058, 3245, 4710, 5539
FauI	CCCGC	3 cut(s)	15, 2239, 5191
FbaI	TGATCA	3 cut(s)	4663, 5308, 5323
FblI	GTMKAC	3 cut(s)	934, 2456, 2993
FriOI	GRGCYC	3 cut(s)	539, 3104, 5348
FspI	TGCGCA	1 cut(s)	1312
GlaI	GCGC	8 cut(s)	92, 254, 499, 805, 1312, 1603, 4347, 5578
GsaI	CCCAGC	2 cut(s)	2776, 3582
GsuI	CTGGAG	3 cut(s)	1266, 2158, 4067
HaeII	RGCGCY	3 cut(s)	94, 501, 1605
HgaI	GACGC	4 cut(s)	640, 2777, 2922, 3639
HhaI	GCGC	8 cut(s)	93, 255, 500, 806, 1313, 1604, 4348, 5579
Hin1I	GRCGYC	3 cut(s)	498, 2062, 3631
Hin6I	GCGC	8 cut(s)	91, 253, 498, 804, 1311, 1602, 4346, 5577
HinP1I	GCGC	8 cut(s)	91, 253, 498, 804, 1311, 1602, 4346, 5577
HincII	GTYRAC	7 cut(s)	130, 855, 2170, 2567, 3669, 4266, 4690
HindII	GTYRAC	7 cut(s)	130, 855, 2170, 2567, 3669, 4266, 4690
HindIII	AAGCTT	5 cut(s)	1898, 2352, 2558, 2863, 5591
HpaI	GTTAAC	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	407, 2067, 3024, 3898
HpyCH4IV	ACGT	5 cut(s)	2044, 2062, 3393, 4426, 5082
HpySE526I	ACGT	5 cut(s)	2044, 2062, 3393, 4426, 5082
Hsp92I	GRCGYC	3 cut(s)	498, 2062, 3631
HspAI	GCGC	8 cut(s)	91, 253, 498, 804, 1311, 1602, 4346, 5577
KasI	GGCGCC	1 cut(s)	497
Ksp22I	TGATCA	3 cut(s)	4663, 5308, 5323
KspAI	GTTAAC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	3601
LguI	GCTCTTC	5 cut(s)	2613, 3086, 3181, 4824, 5336
LmnI	GCTCC	7 cut(s)	12, 304, 1120, 1331, 1609, 2972, 4708
MaeII	ACGT	5 cut(s)	2044, 2062, 3393, 4426, 5082
MbiI	CCGCTC	3 cut(s)	561, 2692, 5198
MfeI	CAATTG	1 cut(s)	5034
MflI	RGATCY	5 cut(s)	1672, 1846, 2157, 3470, 5660
MlsI	TGGCCA	1 cut(s)	4881
MluNI	TGGCCA	1 cut(s)	4881
Mly113I	GGCGCC	1 cut(s)	498
MmeI	TCCRAC	5 cut(s)	324, 1428, 3723, 3850, 4393
Mox20I	TGGCCA	1 cut(s)	4881
Mph1103I	ATGCAT	1 cut(s)	3289
MroXI	GAANNNNTTC	3 cut(s)	2883, 2911, 5491
MscI	TGGCCA	1 cut(s)	4881
MslI	CAYNNNNRTG	4 cut(s)	221, 780, 822, 1508
Msp20I	TGGCCA	1 cut(s)	4881
MspA1I	CMGCKG	5 cut(s)	637, 1052, 3600, 3694, 4469
MspR9I	CCNGG	9 cut(s)	368, 1647, 2034, 2241, 3335, 4729, 5067, 5094, 5445
MunI	CAATTG	1 cut(s)	5034
Mva1269I	GAATGC	3 cut(s)	1365, 2311, 5491
MvaI	CCWGG	7 cut(s)	368, 1647, 2241, 3335, 4729, 5067, 5445
MvnI	CGCG	5 cut(s)	221, 253, 255, 3600, 4998
NarI	GGCGCC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	2034, 5094
NcoI	CCATGG	1 cut(s)	1198
NlaIV	GGNNCC	9 cut(s)	14, 365, 499, 1501, 1863, 2696, 3078, 4551, 5662
NmeAIII	GCCGAG	4 cut(s)	1906, 2443, 3389, 4945
NmuCI	GTSAC	7 cut(s)	398, 885, 2260, 2516, 3443, 3954, 4988
NotI	GCGGCCGC	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	4998
NsbI	TGCGCA	1 cut(s)	1312
NsiI	ATGCAT	1 cut(s)	3289
NspI	RCATGY	5 cut(s)	1127, 1856, 2202, 4278, 5577
PaeI	GCATGC	2 cut(s)	1127, 4278
PagI	TCATGA	4 cut(s)	727, 1102, 4582, 5675
PaqCI	CACCTGC	1 cut(s)	607
PasI	CCCWGGG	1 cut(s)	2240
PciI	ACATGT	1 cut(s)	2198
PciSI	GCTCTTC	5 cut(s)	2613, 3086, 3181, 4824, 5336
PcsI	WCGNNNNNNNCGW	4 cut(s)	76, 2050, 2902, 3893
PctI	GAATGC	3 cut(s)	1365, 2311, 5491
PdmI	GAANNNNTTC	3 cut(s)	2883, 2911, 5491
PflFI	GACNNNGTC	1 cut(s)	4694
PflMI	CCANNNNNTGG	1 cut(s)	1000
PluTI	GGCGCC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	5083
PpuMI	RGGWCCY	2 cut(s)	1541, 4550
PscI	ACATGT	1 cut(s)	2198
PsiI	TTATAA	1 cut(s)	4866
Psp124BI	GAGCTC	1 cut(s)	3104
Psp5II	RGGWCCY	2 cut(s)	1541, 4550
Psp6I	CCWGG	7 cut(s)	366, 1645, 2239, 3333, 4727, 5065, 5443
PspEI	GGTNACC	2 cut(s)	2125, 4757
PspFI	CCCAGC	2 cut(s)	2772, 3578
PspGI	CCWGG	7 cut(s)	366, 1645, 2239, 3333, 4727, 5065, 5443
PspN4I	GGNNCC	9 cut(s)	14, 365, 499, 1501, 1863, 2696, 3078, 4551, 5662
PspPI	GGNCC	6 cut(s)	159, 168, 1541, 1718, 3158, 4550
PspPPI	RGGWCCY	2 cut(s)	1541, 4550
PsrI	GAACNNNNNNTAC	2 cut(s)	4132, 4164
PstI	CTGCAG	4 cut(s)	811, 1777, 3493, 3571
PstNI	CAGNNNCTG	4 cut(s)	889, 2240, 2975, 3509
PsuI	RGATCY	5 cut(s)	1672, 1846, 2157, 3470, 5660
PsyI	GACNNNGTC	1 cut(s)	4694
PvuII	CAGCTG	3 cut(s)	637, 1052, 3694
RruI	TCGCGA	1 cut(s)	4998
RseI	CAYNNNNRTG	4 cut(s)	221, 780, 822, 1508
SacI	GAGCTC	1 cut(s)	3104
SacII	CCGCGG	1 cut(s)	3601
SapI	GCTCTTC	5 cut(s)	2613, 3086, 3181, 4824, 5336
Sau96I	GGNCC	6 cut(s)	159, 168, 1541, 1718, 3158, 4550
ScaI	AGTACT	3 cut(s)	679, 2225, 4044
ScrFI	CCNGG	9 cut(s)	368, 1647, 2034, 2241, 3335, 4729, 5067, 5094, 5445
SfcI	CTRYAG	7 cut(s)	807, 1410, 1773, 2967, 3426, 3489, 3567
SfiI	GGCCNNNNNGGCC	1 cut(s)	167
SfoI	GGCGCC	1 cut(s)	499
Sfr303I	CCGCGG	1 cut(s)	3601
SgrBI	CCGCGG	1 cut(s)	3601
SinI	GGWCC	2 cut(s)	1541, 4550
SmiMI	CAYNNNNRTG	4 cut(s)	221, 780, 822, 1508
SmlI	CTYRAG	4 cut(s)	2576, 4135, 4559, 5366
SmoI	CTYRAG	4 cut(s)	2576, 4135, 4559, 5366
SpeI	ACTAGT	1 cut(s)	1204
SphI	GCATGC	2 cut(s)	1127, 4278
SspDI	GGCGCC	1 cut(s)	497
SspI	AATATT	3 cut(s)	1810, 4523, 5238
SstI	GAGCTC	1 cut(s)	3104
StyD4I	CCNGG	9 cut(s)	366, 1645, 2032, 2239, 3333, 4727, 5065, 5092, 5443
StyI	CCWWGG	3 cut(s)	1198, 5432, 5610
TaiI	ACGT	5 cut(s)	2047, 2065, 3396, 4429, 5085
TaqII	GACCGA	2 cut(s)	1732, 3636
TauI	GCSGC	6 cut(s)	191, 258, 261, 264, 3600, 5179
TseFI	GTSAC	7 cut(s)	398, 885, 2260, 2516, 3443, 3954, 4988
Tsp45I	GTSAC	7 cut(s)	398, 885, 2260, 2516, 3443, 3954, 4988
TspGWI	ACGGA	5 cut(s)	371, 1029, 3882, 4427, 5309
Tth111I	GACNNNGTC	1 cut(s)	4694
Van91I	CCANNNNNTGG	1 cut(s)	1000
VneI	GTGCAC	2 cut(s)	2739, 5427
VpaK11BI	GGWCC	2 cut(s)	1541, 4550
XagI	CCTNNNNNAGG	1 cut(s)	3835
XapI	RAATTY	9 cut(s)	271, 448, 1981, 2092, 2535, 2898, 2944, 4169, 4621
XbaI	TCTAGA	1 cut(s)	4975
XceI	RCATGY	5 cut(s)	1127, 1856, 2202, 4278, 5577
XcmI	CCANNNNNNNNNTGG	4 cut(s)	220, 865, 4706, 5420
XmaJI	CCTAGG	1 cut(s)	5432
XmiI	GTMKAC	3 cut(s)	934, 2456, 2993
XmnI	GAANNNNTTC	3 cut(s)	2883, 2911, 5491
ZraI	GACGTC	1 cut(s)	2063
ZrmI	AGTACT	3 cut(s)	679, 2225, 4044
Zsp2I	ATGCAT	1 cut(s)	3289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.