E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1277, 3759, 4605 |
| AarI | CACCTGC | 1 cut(s) | 349 |
| AatII | GACGTC | 1 cut(s) | 1807 |
| Acc16I | TGCGCA | 1 cut(s) | 1054 |
| Acc36I | ACCTGC | 3 cut(s) | 264, 349, 1058 |
| AccB1I | GGYRCC | 1 cut(s) | 239 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 742 |
| AccBSI | CCGCTC | 3 cut(s) | 303, 2434, 4937 |
| AccI | GTMKAC | 3 cut(s) | 1174, 2198, 2735 |
| AccII | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| AccIII | TCCGGA | 1 cut(s) | 4813 |
| AcoI | YGGCCR | 2 cut(s) | 4618, 5011 |
| AcsI | RAATTY | 9 cut(s) | 190, 1723, 1834, 2277, 2640, 2686, 3862, 3908, 4360 |
| AcyI | GRCGYC | 2 cut(s) | 1804, 3373 |
| AflIII | ACRYGT | 1 cut(s) | 1940 |
| AgeI | ACCGGT | 1 cut(s) | 5162 |
| AhlI | ACTAGT | 1 cut(s) | 946 |
| AjnI | CCWGG | 8 cut(s) | 105, 1387, 1858, 1981, 3075, 4466, 4804, 5182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 156, 188 |
| AleI | CACNNNNGTG | 1 cut(s) | 522 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1846, 1878 |
| Alw21I | GWGCWC | 9 cut(s) | 26, 511, 691, 2419, 2485, 2545, 2840, 2846, 5170 |
| Alw44I | GTGCAC | 2 cut(s) | 2481, 5166 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 631, 1982, 2717, 3251 |
| Aor13HI | TCCGGA | 1 cut(s) | 4813 |
| AoxI | GGCC | 6 cut(s) | 2633, 2899, 3459, 4469, 4618, 5011 |
| ApaLI | GTGCAC | 2 cut(s) | 2481, 5166 |
| ApoI | RAATTY | 9 cut(s) | 190, 1723, 1834, 2277, 2640, 2686, 3862, 3908, 4360 |
| AsiGI | ACCGGT | 1 cut(s) | 5162 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2653, 5230 |
| AspA2I | CCTAGG | 1 cut(s) | 5171 |
| AspLEI | GCGC | 4 cut(s) | 548, 1055, 1463, 5318 |
| AspS9I | GGNCC | 3 cut(s) | 1283, 2900, 4289 |
| AsuC2I | CCSGG | 2 cut(s) | 1776, 4833 |
| AvaII | GGWCC | 2 cut(s) | 1283, 4289 |
| AvrII | CCTAGG | 1 cut(s) | 5171 |
| AxyI | CCTNAGG | 1 cut(s) | 1350 |
| BaeGI | GKGCMC | 5 cut(s) | 214, 2485, 4087, 4280, 5170 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3153, 3186, 3862, 3895 |
| BalI | TGGCCA | 1 cut(s) | 4620 |
| BamHI | GGATCC | 1 cut(s) | 5399 |
| BanI | GGYRCC | 1 cut(s) | 239 |
| BanII | GRGCYC | 2 cut(s) | 2846, 5087 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1487, 1519 |
| BauI | CACGAG | 4 cut(s) | 25, 1362, 2839, 4080 |
| BbsI | GAAGAC | 6 cut(s) | 668, 1385, 3974, 4051, 4088, 4676 |
| Bbv12I | GWGCWC | 9 cut(s) | 26, 511, 691, 2419, 2485, 2545, 2840, 2846, 5170 |
| BbvCI | CCTCAGC | 2 cut(s) | 3156, 3846 |
| BceAI | ACGGC | 4 cut(s) | 139, 536, 1240, 4998 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3419, 3453, 4727, 4761 |
| BciT130I | CCWGG | 8 cut(s) | 107, 1389, 1860, 1983, 3077, 4468, 4806, 5184 |
| BciVI | GTATCC | 2 cut(s) | 3154, 5063 |
| BclI | TGATCA | 2 cut(s) | 5047, 5062 |
| BcnI | CCSGG | 2 cut(s) | 1776, 4833 |
| BcuI | ACTAGT | 1 cut(s) | 946 |
| BfmI | CTRYAG | 7 cut(s) | 836, 1152, 1515, 2709, 3168, 3231, 3309 |
| BfoI | RGCGCY | 1 cut(s) | 1464 |
| BfuAI | ACCTGC | 3 cut(s) | 264, 349, 1058 |
| BfuI | GTATCC | 2 cut(s) | 3154, 5063 |
| BlnI | CCTAGG | 1 cut(s) | 5171 |
| BlpI | GCTNAGC | 1 cut(s) | 2608 |
| BmcAI | AGTACT | 3 cut(s) | 421, 1967, 3783 |
| Bme18I | GGWCC | 2 cut(s) | 1283, 4289 |
| BmgT120I | GGNCC | 3 cut(s) | 1283, 2900, 4289 |
| BmiI | GGNNCC | 8 cut(s) | 104, 241, 1243, 1605, 2438, 2820, 4290, 5401 |
| BmrI | ACTGGG | 1 cut(s) | 4290 |
| BmuI | ACTGGG | 1 cut(s) | 4290 |
| BpiI | GAAGAC | 6 cut(s) | 668, 1385, 3974, 4051, 4088, 4676 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3385, 3417 |
| BpmI | CTGGAG | 3 cut(s) | 1008, 1900, 3806 |
| Bpu10I | CCTNAGC | 5 cut(s) | 852, 2298, 3156, 3846, 5130 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2608 |
| BpuEI | CTTGAG | 4 cut(s) | 2303, 3895, 4319, 5126 |
| BpuMI | CCSGG | 2 cut(s) | 1776, 4833 |
| BsaBI | GATNNNNATC | 2 cut(s) | 4497, 5292 |
| BsaHI | GRCGYC | 2 cut(s) | 1804, 3373 |
| BsaI | GGTCTC | 2 cut(s) | 2109, 3354 |
| BsaWI | WCCGGW | 4 cut(s) | 4191, 4527, 4813, 5162 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1144, 1174, 4808, 4838 |
| Bse118I | RCCGGY | 2 cut(s) | 2051, 5162 |
| Bse1I | ACTGG | 8 cut(s) | 1260, 2479, 3771, 3789, 3889, 4285, 4909, 5152 |
| Bse21I | CCTNAGG | 1 cut(s) | 1350 |
| Bse3DI | GCAATG | 3 cut(s) | 3300, 3321, 4429 |
| Bse8I | GATNNNNATC | 2 cut(s) | 4497, 5292 |
| BseAI | TCCGGA | 1 cut(s) | 4813 |
| BseBI | CCWGG | 8 cut(s) | 107, 1389, 1860, 1983, 3077, 4468, 4806, 5184 |
| BseJI | GATNNNNATC | 2 cut(s) | 4497, 5292 |
| BseMI | GCAATG | 3 cut(s) | 3300, 3321, 4429 |
| BseNI | ACTGG | 8 cut(s) | 1260, 2479, 3771, 3789, 3889, 4285, 4909, 5152 |
| BseRI | GAGGAG | 3 cut(s) | 2482, 2636, 4434 |
| BseSI | GKGCMC | 5 cut(s) | 214, 2485, 4087, 4280, 5170 |
| BseYI | CCCAGC | 2 cut(s) | 2514, 3320 |
| BsgI | GTGCAG | 1 cut(s) | 3991 |
| Bsh1236I | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4065 |
| BshFI | GGCC | 6 cut(s) | 2635, 2901, 3461, 4471, 4620, 5013 |
| BshNI | GGYRCC | 1 cut(s) | 239 |
| BshTI | ACCGGT | 1 cut(s) | 5162 |
| BsiEI | CGRYCG | 1 cut(s) | 4065 |
| BsiHKAI | GWGCWC | 9 cut(s) | 26, 511, 691, 2419, 2485, 2545, 2840, 2846, 5170 |
| BslFI | GGGAC | 2 cut(s) | 800, 4449 |
| BsmBI | CGTCTC | 1 cut(s) | 5024 |
| BsmFI | GGGAC | 2 cut(s) | 800, 4449 |
| BsmI | GAATGC | 4 cut(s) | 1107, 2053, 4483, 5230 |
| BsnI | GGCC | 6 cut(s) | 2635, 2901, 3461, 4471, 4620, 5013 |
| Bso31I | GGTCTC | 2 cut(s) | 2109, 3354 |
| Bsp13I | TCCGGA | 1 cut(s) | 4813 |
| Bsp1407I | TGTACA | 1 cut(s) | 5361 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2608 |
| Bsp19I | CCATGG | 1 cut(s) | 940 |
| Bsp68I | TCGCGA | 1 cut(s) | 4737 |
| BspANI | GGCC | 6 cut(s) | 2635, 2901, 3461, 4471, 4620, 5013 |
| BspEI | TCCGGA | 1 cut(s) | 4813 |
| BspFNI | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| BspHI | TCATGA | 4 cut(s) | 469, 844, 4321, 5414 |
| BspLI | GGNNCC | 8 cut(s) | 104, 241, 1243, 1605, 2438, 2820, 4290, 5401 |
| BspMAI | CTGCAG | 4 cut(s) | 840, 1519, 3235, 3313 |
| BspMI | ACCTGC | 3 cut(s) | 264, 349, 1058 |
| BspQI | GCTCTTC | 5 cut(s) | 2355, 2828, 2923, 4563, 5075 |
| BspT107I | GGYRCC | 1 cut(s) | 239 |
| BspTNI | GGTCTC | 2 cut(s) | 2109, 3354 |
| BsrBI | CCGCTC | 3 cut(s) | 303, 2434, 4937 |
| BsrDI | GCAATG | 3 cut(s) | 3300, 3321, 4429 |
| BsrFI | RCCGGY | 2 cut(s) | 2051, 5162 |
| BsrGI | TGTACA | 1 cut(s) | 5361 |
| BsrI | ACTGG | 8 cut(s) | 1260, 2479, 3771, 3789, 3889, 4285, 4909, 5152 |
| BssAI | RCCGGY | 2 cut(s) | 2051, 5162 |
| BssNI | GRCGYC | 2 cut(s) | 1804, 3373 |
| BssSI | CACGAG | 4 cut(s) | 25, 1362, 2839, 4080 |
| BssT1I | CCWWGG | 4 cut(s) | 940, 1659, 5171, 5349 |
| Bst2BI | CACGAG | 4 cut(s) | 25, 1362, 2839, 4080 |
| Bst2UI | CCWGG | 8 cut(s) | 107, 1389, 1860, 1983, 3077, 4468, 4806, 5184 |
| BstACI | GRCGYC | 2 cut(s) | 1804, 3373 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5249 |
| BstAUI | TGTACA | 1 cut(s) | 5361 |
| BstDSI | CCRYGG | 2 cut(s) | 940, 3340 |
| BstFNI | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| BstH2I | RGCGCY | 1 cut(s) | 1464 |
| BstHHI | GCGC | 4 cut(s) | 548, 1055, 1463, 5318 |
| BstMCI | CGRYCG | 1 cut(s) | 4065 |
| BstNI | CCWGG | 8 cut(s) | 107, 1389, 1860, 1983, 3077, 4468, 4806, 5184 |
| BstNSI | RCATGY | 5 cut(s) | 869, 1598, 1944, 4017, 5316 |
| BstSFI | CTRYAG | 7 cut(s) | 836, 1152, 1515, 2709, 3168, 3231, 3309 |
| BstSLI | GKGCMC | 5 cut(s) | 214, 2485, 4087, 4280, 5170 |
| BstUI | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| BstV2I | GAAGAC | 6 cut(s) | 668, 1385, 3974, 4051, 4088, 4676 |
| BstX2I | RGATCY | 6 cut(s) | 278, 1414, 1588, 1899, 3212, 5399 |
| BstYI | RGATCY | 6 cut(s) | 278, 1414, 1588, 1899, 3212, 5399 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1350 |
| BsuI | GTATCC | 2 cut(s) | 3154, 5063 |
| BsuRI | GGCC | 6 cut(s) | 2635, 2901, 3461, 4471, 4620, 5013 |
| BtgI | CCRYGG | 2 cut(s) | 940, 3340 |
| BtgZI | GCGATG | 3 cut(s) | 287, 894, 4752 |
| BtsI | GCAGTG | 6 cut(s) | 629, 705, 3520, 3979, 5073, 5202 |
| BtuMI | TCGCGA | 1 cut(s) | 4737 |
| BveI | ACCTGC | 3 cut(s) | 264, 349, 1058 |
| CaiI | CAGNNNCTG | 4 cut(s) | 631, 1982, 2717, 3251 |
| CciI | TCATGA | 4 cut(s) | 469, 844, 4321, 5414 |
| CfoI | GCGC | 4 cut(s) | 548, 1055, 1463, 5318 |
| Cfr10I | RCCGGY | 2 cut(s) | 2051, 5162 |
| Cfr13I | GGNCC | 3 cut(s) | 1283, 2900, 4289 |
| Cfr42I | CCGCGG | 1 cut(s) | 3343 |
| CseI | GACGC | 4 cut(s) | 382, 2294, 2519, 3381 |
| CsiI | ACCWGGT | 1 cut(s) | 1387 |
| CspAI | ACCGGT | 1 cut(s) | 5162 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1875, 1910, 4974, 5009, 5248, 5283 |
| DraI | TTTAAA | 2 cut(s) | 2025, 2874 |
| EaeI | YGGCCR | 2 cut(s) | 4618, 5011 |
| EciI | GGCGGA | 1 cut(s) | 141 |
| Ecl136II | GAGCTC | 1 cut(s) | 2844 |
| Eco130I | CCWWGG | 4 cut(s) | 940, 1659, 5171, 5349 |
| Eco24I | GRGCYC | 2 cut(s) | 2846, 5087 |
| Eco31I | GGTCTC | 2 cut(s) | 2109, 3354 |
| Eco32I | GATATC | 2 cut(s) | 3052, 4852 |
| Eco47I | GGWCC | 2 cut(s) | 1283, 4289 |
| Eco53kI | GAGCTC | 1 cut(s) | 2844 |
| Eco81I | CCTNAGG | 1 cut(s) | 1350 |
| EcoICRI | GAGCTC | 1 cut(s) | 2844 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1283, 2900, 4289 |
| EcoRI | GAATTC | 2 cut(s) | 1723, 2640 |
| EcoRII | CCWGG | 8 cut(s) | 105, 1387, 1858, 1981, 3075, 4466, 4804, 5182 |
| EcoRV | GATATC | 2 cut(s) | 3052, 4852 |
| EcoT14I | CCWWGG | 4 cut(s) | 940, 1659, 5171, 5349 |
| EcoT22I | ATGCAT | 1 cut(s) | 3031 |
| EcoT38I | GRGCYC | 2 cut(s) | 2846, 5087 |
| ErhI | CCWWGG | 4 cut(s) | 940, 1659, 5171, 5349 |
| Esp3I | CGTCTC | 1 cut(s) | 5024 |
| FaqI | GGGAC | 2 cut(s) | 800, 4449 |
| FauI | CCCGC | 2 cut(s) | 1981, 4930 |
| FbaI | TGATCA | 2 cut(s) | 5047, 5062 |
| FblI | GTMKAC | 3 cut(s) | 1174, 2198, 2735 |
| FriOI | GRGCYC | 2 cut(s) | 2846, 5087 |
| FspI | TGCGCA | 1 cut(s) | 1054 |
| GlaI | GCGC | 4 cut(s) | 547, 1054, 1462, 5317 |
| GsaI | CCCAGC | 2 cut(s) | 2518, 3324 |
| GsuI | CTGGAG | 3 cut(s) | 1008, 1900, 3806 |
| HaeII | RGCGCY | 1 cut(s) | 1464 |
| HaeIII | GGCC | 6 cut(s) | 2635, 2901, 3461, 4471, 4620, 5013 |
| HgaI | GACGC | 4 cut(s) | 382, 2294, 2519, 3381 |
| HhaI | GCGC | 4 cut(s) | 548, 1055, 1463, 5318 |
| Hin1I | GRCGYC | 2 cut(s) | 1804, 3373 |
| Hin6I | GCGC | 4 cut(s) | 546, 1053, 1461, 5316 |
| HinP1I | GCGC | 4 cut(s) | 546, 1053, 1461, 5316 |
| HincII | GTYRAC | 8 cut(s) | 597, 1696, 1912, 2309, 3256, 3411, 4005, 4429 |
| HindII | GTYRAC | 8 cut(s) | 597, 1696, 1912, 2309, 3256, 3411, 4005, 4429 |
| HindIII | AAGCTT | 3 cut(s) | 2094, 2605, 5330 |
| Hpy99I | CGWCG | 5 cut(s) | 146, 149, 1809, 2766, 3637 |
| HpyCH4IV | ACGT | 2 cut(s) | 1786, 1804 |
| HpySE526I | ACGT | 2 cut(s) | 1786, 1804 |
| Hsp92I | GRCGYC | 2 cut(s) | 1804, 3373 |
| HspAI | GCGC | 4 cut(s) | 546, 1053, 1461, 5316 |
| Kpn2I | TCCGGA | 1 cut(s) | 4813 |
| Ksp22I | TGATCA | 2 cut(s) | 5047, 5062 |
| KspI | CCGCGG | 1 cut(s) | 3343 |
| LguI | GCTCTTC | 5 cut(s) | 2355, 2828, 2923, 4563, 5075 |
| LmnI | GCTCC | 5 cut(s) | 21, 862, 1073, 2714, 4447 |
| MabI | ACCWGGT | 1 cut(s) | 1387 |
| MaeII | ACGT | 2 cut(s) | 1786, 1804 |
| MbiI | CCGCTC | 3 cut(s) | 303, 2434, 4937 |
| MfeI | CAATTG | 3 cut(s) | 3680, 4743, 4773 |
| MflI | RGATCY | 6 cut(s) | 278, 1414, 1588, 1899, 3212, 5399 |
| MlsI | TGGCCA | 1 cut(s) | 4620 |
| MluNI | TGGCCA | 1 cut(s) | 4620 |
| MmeI | TCCRAC | 6 cut(s) | 63, 1170, 1787, 3462, 3589, 4132 |
| Mox20I | TGGCCA | 1 cut(s) | 4620 |
| Mph1103I | ATGCAT | 1 cut(s) | 3031 |
| MroI | TCCGGA | 1 cut(s) | 4813 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2653, 5230 |
| MscI | TGGCCA | 1 cut(s) | 4620 |
| MslI | CAYNNNNRTG | 3 cut(s) | 522, 564, 1250 |
| Msp20I | TGGCCA | 1 cut(s) | 4620 |
| MspA1I | CMGCKG | 5 cut(s) | 379, 794, 3342, 3433, 4208 |
| MunI | CAATTG | 3 cut(s) | 3680, 4743, 4773 |
| Mva1269I | GAATGC | 4 cut(s) | 1107, 2053, 4483, 5230 |
| MvaI | CCWGG | 8 cut(s) | 107, 1389, 1860, 1983, 3077, 4468, 4806, 5184 |
| MvnI | CGCG | 3 cut(s) | 2109, 3342, 4737 |
| NciI | CCSGG | 2 cut(s) | 1776, 4833 |
| NcoI | CCATGG | 1 cut(s) | 940 |
| NlaIV | GGNNCC | 8 cut(s) | 104, 241, 1243, 1605, 2438, 2820, 4290, 5401 |
| NmeAIII | GCCGAG | 2 cut(s) | 1648, 4684 |
| NmuCI | GTSAC | 7 cut(s) | 137, 627, 2002, 2258, 3185, 3693, 4727 |
| NruI | TCGCGA | 1 cut(s) | 4737 |
| NsbI | TGCGCA | 1 cut(s) | 1054 |
| NsiI | ATGCAT | 1 cut(s) | 3031 |
| NspI | RCATGY | 5 cut(s) | 869, 1598, 1944, 4017, 5316 |
| OliI | CACNNNNGTG | 1 cut(s) | 522 |
| PaeI | GCATGC | 2 cut(s) | 869, 4017 |
| PagI | TCATGA | 4 cut(s) | 469, 844, 4321, 5414 |
| PaqCI | CACCTGC | 1 cut(s) | 349 |
| PasI | CCCWGGG | 1 cut(s) | 1982 |
| PciI | ACATGT | 1 cut(s) | 1940 |
| PciSI | GCTCTTC | 5 cut(s) | 2355, 2828, 2923, 4563, 5075 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1792, 2644, 3632 |
| PctI | GAATGC | 4 cut(s) | 1107, 2053, 4483, 5230 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2653, 5230 |
| PflFI | GACNNNGTC | 1 cut(s) | 4433 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 742 |
| PinAI | ACCGGT | 1 cut(s) | 5162 |
| PpuMI | RGGWCCY | 2 cut(s) | 1283, 4289 |
| PscI | ACATGT | 1 cut(s) | 1940 |
| PsiI | TTATAA | 3 cut(s) | 1277, 3759, 4605 |
| Psp124BI | GAGCTC | 1 cut(s) | 2846 |
| Psp5II | RGGWCCY | 2 cut(s) | 1283, 4289 |
| Psp6I | CCWGG | 8 cut(s) | 105, 1387, 1858, 1981, 3075, 4466, 4804, 5182 |
| PspFI | CCCAGC | 2 cut(s) | 2514, 3320 |
| PspGI | CCWGG | 8 cut(s) | 105, 1387, 1858, 1981, 3075, 4466, 4804, 5182 |
| PspN4I | GGNNCC | 8 cut(s) | 104, 241, 1243, 1605, 2438, 2820, 4290, 5401 |
| PspPI | GGNCC | 3 cut(s) | 1283, 2900, 4289 |
| PspPPI | RGGWCCY | 2 cut(s) | 1283, 4289 |
| PstI | CTGCAG | 4 cut(s) | 840, 1519, 3235, 3313 |
| PstNI | CAGNNNCTG | 4 cut(s) | 631, 1982, 2717, 3251 |
| PsuI | RGATCY | 6 cut(s) | 278, 1414, 1588, 1899, 3212, 5399 |
| PsyI | GACNNNGTC | 1 cut(s) | 4433 |
| PvuII | CAGCTG | 3 cut(s) | 379, 794, 3433 |
| RruI | TCGCGA | 1 cut(s) | 4737 |
| RseI | CAYNNNNRTG | 3 cut(s) | 522, 564, 1250 |
| SacI | GAGCTC | 1 cut(s) | 2846 |
| SacII | CCGCGG | 1 cut(s) | 3343 |
| SapI | GCTCTTC | 5 cut(s) | 2355, 2828, 2923, 4563, 5075 |
| Sau96I | GGNCC | 3 cut(s) | 1283, 2900, 4289 |
| ScaI | AGTACT | 3 cut(s) | 421, 1967, 3783 |
| SexAI | ACCWGGT | 1 cut(s) | 1387 |
| SfcI | CTRYAG | 7 cut(s) | 836, 1152, 1515, 2709, 3168, 3231, 3309 |
| Sfr303I | CCGCGG | 1 cut(s) | 3343 |
| SgrBI | CCGCGG | 1 cut(s) | 3343 |
| SinI | GGWCC | 2 cut(s) | 1283, 4289 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 522, 564, 1250 |
| SmlI | CTYRAG | 4 cut(s) | 2318, 3874, 4298, 5105 |
| SmoI | CTYRAG | 4 cut(s) | 2318, 3874, 4298, 5105 |
| SpeI | ACTAGT | 1 cut(s) | 946 |
| SphI | GCATGC | 2 cut(s) | 869, 4017 |
| SspI | AATATT | 3 cut(s) | 1552, 4262, 4977 |
| SstI | GAGCTC | 1 cut(s) | 2846 |
| StyI | CCWWGG | 4 cut(s) | 940, 1659, 5171, 5349 |
| TaiI | ACGT | 2 cut(s) | 1789, 1807 |
| TaqII | GACCGA | 2 cut(s) | 1474, 3378 |
| TauI | GCSGC | 3 cut(s) | 551, 3342, 4918 |
| TseFI | GTSAC | 7 cut(s) | 137, 627, 2002, 2258, 3185, 3693, 4727 |
| Tsp45I | GTSAC | 7 cut(s) | 137, 627, 2002, 2258, 3185, 3693, 4727 |
| TspGWI | ACGGA | 4 cut(s) | 110, 3621, 4166, 5048 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4433 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 742 |
| VneI | GTGCAC | 2 cut(s) | 2481, 5166 |
| VpaK11BI | GGWCC | 2 cut(s) | 1283, 4289 |
| XapI | RAATTY | 9 cut(s) | 190, 1723, 1834, 2277, 2640, 2686, 3862, 3908, 4360 |
| XbaI | TCTAGA | 1 cut(s) | 4714 |
| XceI | RCATGY | 5 cut(s) | 869, 1598, 1944, 4017, 5316 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 607, 4445 |
| XmaJI | CCTAGG | 1 cut(s) | 5171 |
| XmiI | GTMKAC | 3 cut(s) | 1174, 2198, 2735 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2653, 5230 |
| ZraI | GACGTC | 1 cut(s) | 1805 |
| ZrmI | AGTACT | 3 cut(s) | 421, 1967, 3783 |
| Zsp2I | ATGCAT | 1 cut(s) | 3031 |