Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Forward (+)

40279688 .. 40280507

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1173900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTAGCCAGTTTTTCAAAAGTGATAGAATACTTTAGGTTGGTTGGGCGTGTGATGGCGAAGGCTCTTCAAGATGGGCGGCTATTGGATTTGCCACTATCAACAGCATTTTATAAGCTTTTGCTTGGTCAAGTAAGCCAGTGGAAGAATATAACCTTTTTCATTTCACATATAGTTTTATTGAAGTGGTTTAGTTTTTATATTTTTACCAAAACAGTTTTTGATGTAGAAATTAACCCATTTTCCTTCCTTTCTTCCCATTCCTTCAGGAGCTTGATTTACATGATATCCTTTCCTTTGATGCTGAGCTTGGAAAGACTCTGCAAGAATTACATAATCTTGTCTGCCGGAAAACTATATTTAGAATCAAATGGTGATAATCGTGATGCCATTGTTGAATTGCATTTACGTGGAGTGTCAATTGATGACCTGTGTTTAGATTTTACACTCCCTGGCTATCCAGATTATGTGTTGAAACCTGGAGATGAAAATGTTGACATCAATAACTTGGAGGAGTACATAACTTTAGTTGTTGACGCGACAGTGAAGACTGGGATAATGAGGCAAATTGAAGCATTTAGAGCAGGGTTTAATCAGGTTCAGTTTTTTTTTTATCTGATTATTATTGAGTTAGTGCATTTTATGTGCCAGGATTCTTTCAAATATCATTGTTTAGTTCAATGTCCTGCTGCGATTGTAATTAATATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

238

Amino Acids

27.39

Weight (kDa)

6.06

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	10 - 200	1e-18	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccII	CGCG	1 cut(s)	539
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	518
AgsI	TTSAA	8 cut(s)	18, 71, 184, 398, 475, 572, 661, 680
AjnI	CCWGG	3 cut(s)	451, 478, 648
AluBI	AGCT	3 cut(s)	118, 273, 309
AluI	AGCT	3 cut(s)	118, 273, 309
ApeKI	GCWGC	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	2 cut(s)	49, 68
BciT130I	CCWGG	3 cut(s)	453, 480, 650
BisI	GCNGC	2 cut(s)	80, 690
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	81, 691
Bme1390I	CCNGG	3 cut(s)	453, 480, 650
BmrFI	CCNGG	3 cut(s)	453, 480, 650
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	291, 376
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	9, 139, 556
BseBI	CCWGG	3 cut(s)	453, 480, 650
BseDI	CCNNGG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	3 cut(s)	9, 139, 556
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	539
BspQI	GCTCTTC	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	9, 139, 556
BssECI	CCNNGG	1 cut(s)	451
Bst2UI	CCWGG	3 cut(s)	453, 480, 650
Bst4CI	ACNGT	2 cut(s)	217, 544
Bst6I	CTCTTC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	3 cut(s)	453, 480, 650
BstSCI	CCNGG	3 cut(s)	451, 478, 648
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	676
BstV2I	GAAGAC	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	146, 549
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	8, 65, 82, 118, 138, 273, 309, 456
CviKI_1	RGCY	8 cut(s)	8, 65, 82, 118, 138, 273, 309, 456
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	250
EcoRII	CCWGG	3 cut(s)	451, 478, 648
EcoRV	GATATC	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	711
FaeI	CATG	1 cut(s)	286
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	80, 690
Fsp4HI	GCNGC	2 cut(s)	80, 690
GluI	GCNGC	2 cut(s)	80, 690
GsuI	CTGGAG	1 cut(s)	501
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	2 cut(s)	496, 535
HindII	GTYRAC	2 cut(s)	496, 535
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	318, 365, 653
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	496, 535
Hpy188I	TCNGA	1 cut(s)	618
Hpy188III	TCNNGA	4 cut(s)	71, 268, 383, 461
Hpy8I	GTNNAC	2 cut(s)	496, 535
HpyAV	CCTTC	3 cut(s)	55, 256, 274
HpyCH4III	ACNGT	2 cut(s)	217, 544
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	324, 403, 637, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	676
LweI	GCATC	2 cut(s)	291, 376
MaeII	ACGT	1 cut(s)	409
MboII	GAAGA	4 cut(s)	59, 157, 246, 559
MfeI	CAATTG	1 cut(s)	420
MluCI	AATT	6 cut(s)	231, 328, 398, 420, 567, 699
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	2 cut(s)	505, 555
Mph1103I	ATGCAT	1 cut(s)	711
MseI	TTAA	4 cut(s)	234, 591, 702, 712
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	453, 480, 650
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	3 cut(s)	453, 480, 650
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	581
NlaIII	CATG	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	365, 653
PkrI	GCNGC	2 cut(s)	81, 691
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	451, 478, 648
PspGI	CCWGG	3 cut(s)	451, 478, 648
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	234, 591, 702, 712
SatI	GCNGC	2 cut(s)	80, 690
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	3 cut(s)	453, 480, 650
SetI	ASST	9 cut(s)	41, 120, 158, 275, 311, 412, 432, 481, 600
SfaNI	GCATC	2 cut(s)	291, 376
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	6 cut(s)	231, 328, 398, 420, 567, 699
SsiI	CCGC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	451, 478, 648
TaaI	ACNGT	2 cut(s)	217, 544
TaiI	ACGT	1 cut(s)	412
TasI	AATT	6 cut(s)	231, 328, 398, 420, 567, 699
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	365, 653
Tru1I	TTAA	4 cut(s)	234, 591, 702, 712
Tru9I	TTAA	4 cut(s)	234, 591, 702, 712
TscAI	CASTG	2 cut(s)	146, 549
TseI	GCWGC	1 cut(s)	689
TspDTI	ATGAA	2 cut(s)	151, 501
TspRI	CASTG	2 cut(s)	146, 549
VspI	ATTAAT	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.