Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Reverse (-)

1725551 .. 1727939

Gene Structure 2389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCACTGCAAGCTCTGAAGAAAATATCTCAGGAACACCCAACTGCCTGTCTACGAACTGGTGCTCTTATGGCAGTGCTTTCTTATCTGGATTTCTTTTCCACAGGAGTCCAGCGTGTGGCATTATCAACTGCTGCGAATATGTGCAAGAAACTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTCCCATTACTGACAAATCTTCTGCAATATCATGATGATAAGGTTTTGGAGCATGCTTCTGTATGTCTGACTCGAATTGCTGAATCATTTGCATCATCGCCTGACAAACTTGACGAACTATGCAACCATGGACTAGTTGCTCAATCTGCATCTCTTATTTCTACCAGCAATTCTGGAGGTGGGCAGTCATCTCTCAGTACACCTACTTATACGATTTTTGAGATTGTCAATCTTGCAAATGAGCTGCTTCCTCCACTTCCACAAGTAACCATCTCCATGCCGTCCAGTTTCAATTTGTTTATGAAAGGACCTATTGTGAAAATGTCATCTGGTAGCAGTTCTGGGAAGCCAGGAGATACCAGTGGAAGCGCTCCTGAGGTTTCAGCTCGTGAGAAATTATTGAACGAACAGCCTGGTCTTCATCAGCAATTTGGAATGGATCTCCTTCCTGTTTTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

216

Amino Acids

22.97

Weight (kDa)

5.47

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	636
AcuI	CTGAAG	2 cut(s)	38, 144
AfaI	GTAC	1 cut(s)	388
AfeI	AGCGCT	1 cut(s)	559
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	481, 592
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	538, 601
AluBI	AGCT	5 cut(s)	14, 170, 188, 433, 575
AluI	AGCT	5 cut(s)	14, 170, 188, 433, 575
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	636
Aor51HI	AGCGCT	1 cut(s)	559
ApeKI	GCWGC	3 cut(s)	134, 167, 433
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	564
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	121, 179, 420
BccI	CCATC	2 cut(s)	175, 467
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	2 cut(s)	540, 603
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	3 cut(s)	135, 168, 434
BlsI	GCNGC	3 cut(s)	136, 169, 435
Bme1390I	CCNGG	2 cut(s)	540, 603
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmrFI	CCNGG	2 cut(s)	540, 603
BmsI	GCATC	3 cut(s)	154, 290, 347
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	64, 474, 549
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	540, 603
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	44, 397, 555
BseNI	ACTGG	3 cut(s)	64, 474, 549
BseXI	GCAGC	3 cut(s)	121, 179, 420
BsiHKAI	GWGCWC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	316
BspCNI	CTCAG	3 cut(s)	43, 396, 556
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	636
BsrI	ACTGG	3 cut(s)	64, 474, 549
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	628
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	540, 603
BstC8I	GCNNGC	2 cut(s)	12, 243
BstDEI	CTNAG	3 cut(s)	30, 383, 564
BstDSI	CCRYGG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 335
BstNI	CCWGG	2 cut(s)	540, 603
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	538, 601
BstV1I	GCAGC	3 cut(s)	121, 179, 420
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	270
BtsI	GCAGTG	2 cut(s)	5, 81
BtsIMutI	CAGTG	3 cut(s)	5, 81, 556
Cac8I	GCNNGC	2 cut(s)	12, 243
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	221, 242, 317, 466
CviJI	RGCY	7 cut(s)	14, 170, 188, 433, 538, 575, 601
CviKI_1	RGCY	7 cut(s)	14, 170, 188, 433, 538, 575, 601
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	30, 383, 564
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	497
Eco47III	AGCGCT	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	38, 144
Eco81I	CCTNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	538, 601
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	224, 245, 320, 469
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	220, 241, 316, 465
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	135, 168, 434
Fsp4HI	GCNGC	3 cut(s)	135, 168, 434
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	3 cut(s)	135, 168, 434
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	561
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	224, 245, 320, 469
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	108, 259, 272
Hpy166II	GTNNAC	2 cut(s)	53, 389
Hpy188I	TCNGA	3 cut(s)	18, 163, 258
Hpy188III	TCNNGA	6 cut(s)	32, 89, 221, 363, 563, 578
Hpy8I	GTNNAC	2 cut(s)	53, 389
HpyAV	CCTTC	2 cut(s)	168, 644
HpyCH4V	TGCA	8 cut(s)	10, 147, 167, 214, 281, 312, 338, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 335
HpyF3I	CTNAG	3 cut(s)	30, 383, 564
Hsp92II	CATG	4 cut(s)	224, 245, 320, 469
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	238, 565
Lsp1109I	GCAGC	3 cut(s)	121, 179, 420
LweI	GCATC	3 cut(s)	154, 290, 347
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	3, 454
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	3 cut(s)	31, 200, 599
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	5 cut(s)	264, 358, 481, 584, 617
MlyI	GAGTC	2 cut(s)	117, 253
MnlI	CCTC	3 cut(s)	359, 450, 559
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	540, 603
MvaI	CCWGG	2 cut(s)	540, 603
MwoI	GCNNNNNNNGC	2 cut(s)	71, 335
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	4 cut(s)	224, 245, 320, 469
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	136, 169, 435
PleI	GAGTC	2 cut(s)	116, 253
PpsI	GAGTC	2 cut(s)	116, 253
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	538, 601
PspGI	CCWGG	2 cut(s)	538, 601
PspPI	GGNCC	1 cut(s)	497
PspPPI	RGGWCCY	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	3 cut(s)	135, 168, 434
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	2 cut(s)	117, 253
ScrFI	CCNGG	2 cut(s)	540, 603
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	154, 290, 347
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	322
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	5 cut(s)	264, 358, 481, 584, 617
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	538, 601
StyI	CCWWGG	1 cut(s)	316
TaqI	TCGA	1 cut(s)	262
TasI	AATT	5 cut(s)	264, 358, 481, 584, 617
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	3 cut(s)	12, 81, 556
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	134, 167, 433
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	506, 599
TspRI	CASTG	3 cut(s)	12, 81, 556
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	497
XceI	RCATGY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.