Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Forward (+)

65696885 .. 65698170

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCCGTCAAGTTTCAATTTGTTTATGAAAGGACCTATTGTGAAAAAGTCATCTGGTAGTAGTTCTGGGAAGCCAGAAGATACCAGTGGAAACACTCCTGAGGTTTCAGCTCGTGAGAAATTATTGAACGAACAGCCTGGTCTTCTTCAGCAATTTGGAATGGATCTCCTTCCTGTTGTAATACAGATTTATGGCTCTAGTGTAAACGACCCTGTTCGCCACAAATGTCTATCGGTCATCGGGAAGTTAATGTACTTCAGCCCTGCAGAGATGATTGAGTCTTTGTTAAGTATGACAAATATTGCAAGTTTCTTAGCCGGTGTTTTAGCATGGAAAGATCCGCATGTCTTGGTTCCTGCTCTCCAAATTGCCGAGATACTCATGGAGAAGCTTCCCAAGACTTTCTCCAAGGTGTTTGTCAGAGAAGGTGTGGTTCACGCTGTTGACCAACTTATTTTAGCTGGTACTCCGAATTCAGTTACTTCACAAGTCTCTTCTGCTGATAAGGACAATGATTCTGTGCCGGGATCATCACGTTCTAGGCGCTATAGATGTCACAACAGTAACTCAAATCCAGATGAAAATTCATTGGAAGAATCGAAGATTCCTGCTTCTGTAGCCGTTGACCCTGGGGCGGGTGAAGTTGGTGTCACCGATGATCTATTACATTTAAAAAATCTGTATGTGAAGTTGAATGCCGGTGTAGATGACCCAAAAACAAAAGCAAAGGGAAAATCAAAAGCTTCTGTGTCTCGCTTAGTTGATAGTTATGCAAATAAGGAAGAGTATTTGATTGGTGTGGTAGCCGAACTAAGCAAAGGGGATGGTGTGTCTACCTTTGAGTTCATAGGTAGCGGTGTTGTCGCAGCTTTGCTAAACTATTTTTCTTGTGGCCACTTCTCGAAGGACAGAATTTCAGAAGCTAATTTGCCTAAGCTTCGTCAACAAGCCCTCAAGAGGTTTAAGTCATTTGTTGCTGTTGCTCTTCCTTTCAGTATTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

336

Amino Acids

36.14

Weight (kDa)

7.02

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	833
AciI	CCGC	3 cut(s)	341, 635, 855
AclWI	GGATC	3 cut(s)	171, 332, 535
AcoI	YGGCCR	1 cut(s)	892
AcsI	RAATTY	3 cut(s)	472, 583, 912
AcuI	CTGAAG	2 cut(s)	131, 241
AfaI	GTAC	2 cut(s)	254, 466
AfiI	CCNNNNNNNGG	3 cut(s)	634, 635, 957
AgsI	TTSAA	3 cut(s)	16, 127, 694
AjnI	CCWGG	2 cut(s)	136, 628
AluBI	AGCT	7 cut(s)	110, 391, 461, 743, 869, 923, 937
AluI	AGCT	7 cut(s)	110, 391, 461, 743, 869, 923, 937
Alw26I	GTCTC	2 cut(s)	496, 756
AlwI	GGATC	3 cut(s)	171, 332, 535
AoxI	GGCC	1 cut(s)	892
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	3 cut(s)	472, 583, 912
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	643, 650
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	894
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	878
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	2 cut(s)	138, 630
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	496, 756
BfaI	CTAG	2 cut(s)	198, 540
BfmI	CTRYAG	3 cut(s)	264, 547, 615
BfoI	RGCGCY	1 cut(s)	547
BisI	GCNGC	1 cut(s)	867
BlsI	GCNGC	1 cut(s)	868
Bme1390I	CCNGG	3 cut(s)	138, 525, 630
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	138, 525, 630
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	408, 628, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	634, 635, 957
Bse118I	RCCGGY	2 cut(s)	317, 698
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	138, 630
BseDI	CCNNGG	3 cut(s)	408, 628, 629
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	634, 635, 957
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	878
BshFI	GGCC	1 cut(s)	894
BsiSI	CCGG	3 cut(s)	318, 524, 699
BslI	CCNNNNNNNGG	3 cut(s)	634, 635, 957
BsmAI	GTCTC	2 cut(s)	496, 756
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	163, 337, 527, 658
BspACI	CCGC	3 cut(s)	341, 635, 855
BspANI	GGCC	1 cut(s)	894
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	171, 332, 535
BspQI	GCTCTTC	1 cut(s)	990
BsrFI	RCCGGY	2 cut(s)	317, 698
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	317, 698
BssECI	CCNNGG	3 cut(s)	408, 628, 629
BssMI	GATC	4 cut(s)	163, 337, 527, 658
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	138, 630
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	3 cut(s)	499, 777, 990
BstDEI	CTNAG	5 cut(s)	99, 313, 757, 812, 933
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	4 cut(s)	166, 340, 530, 661
BstMAI	GTCTC	2 cut(s)	496, 756
BstMBI	GATC	4 cut(s)	163, 337, 527, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	138, 630
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	136, 523, 628
BstSFI	CTRYAG	3 cut(s)	264, 547, 615
BstV1I	GCAGC	1 cut(s)	878
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	163, 337
BstYI	RGATCY	2 cut(s)	163, 337
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	546
Cfr10I	RCCGGY	2 cut(s)	317, 698
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	253, 465
CviAII	CATG	3 cut(s)	330, 344, 382
CviQI	GTAC	2 cut(s)	253, 465
DdeI	CTNAG	5 cut(s)	99, 313, 757, 812, 933
DpnI	GATC	4 cut(s)	165, 339, 529, 660
DpnII	GATC	4 cut(s)	163, 337, 527, 658
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	3 cut(s)	499, 777, 990
EarI	CTCTTC	3 cut(s)	499, 777, 990
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	2 cut(s)	131, 241
Eco81I	CCTNAGG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	136, 628
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	333, 347, 385
FatI	CATG	3 cut(s)	329, 343, 381
FauI	CCCGC	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	1 cut(s)	836
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	2 cut(s)	198, 540
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	894
HapII	CCGG	3 cut(s)	318, 524, 699
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	333, 347, 385
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	3 cut(s)	445, 625, 944
HindII	GTYRAC	3 cut(s)	445, 625, 944
HindIII	AAGCTT	3 cut(s)	389, 741, 935
HinfI	GANTC	4 cut(s)	278, 515, 596, 604
HpaII	CCGG	3 cut(s)	318, 524, 699
HphI	GGTGA	2 cut(s)	643, 650
Hpy166II	GTNNAC	6 cut(s)	205, 436, 445, 625, 834, 944
Hpy188I	TCNGA	3 cut(s)	422, 471, 919
Hpy188III	TCNNGA	6 cut(s)	98, 113, 241, 575, 901, 955
Hpy8I	GTNNAC	6 cut(s)	205, 436, 445, 625, 834, 944
HpyAV	CCTTC	3 cut(s)	179, 419, 898
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	3 cut(s)	266, 305, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	5 cut(s)	99, 313, 757, 812, 933
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	3 cut(s)	333, 347, 385
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	163, 337, 527, 658
LguI	GCTCTTC	1 cut(s)	990
Lsp1109I	GCAGC	1 cut(s)	878
MaeI	CTAG	2 cut(s)	198, 540
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	4 cut(s)	478, 554, 563, 649
MalI	GATC	4 cut(s)	165, 339, 529, 660
MboI	GATC	4 cut(s)	163, 337, 527, 658
MboII	GAAGA	8 cut(s)	89, 134, 137, 486, 605, 613, 794, 977
MflI	RGATCY	2 cut(s)	163, 337
MlsI	TGGCCA	1 cut(s)	894
MluCI	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 912, 925
MluNI	TGGCCA	1 cut(s)	894
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	94, 951, 962
Mox20I	TGGCCA	1 cut(s)	894
MscI	TGGCCA	1 cut(s)	894
MseI	TTAA	4 cut(s)	248, 287, 671, 963
Msp20I	TGGCCA	1 cut(s)	894
MspI	CCGG	3 cut(s)	318, 524, 699
MspR9I	CCNGG	3 cut(s)	138, 525, 630
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	2 cut(s)	138, 630
MwoI	GCNNNNNNNGC	1 cut(s)	617
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	163, 337, 527, 658
NlaIII	CATG	3 cut(s)	333, 347, 385
NlaIV	GGNNCC	1 cut(s)	354
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	554, 649
NspI	RCATGY	1 cut(s)	347
PasI	CCCWGGG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	990
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	515, 596, 604
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	136, 628
PspGI	CCWGG	2 cut(s)	136, 628
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	163, 337
RsaI	GTAC	2 cut(s)	254, 466
RsaNI	GTAC	2 cut(s)	253, 465
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	4 cut(s)	248, 287, 671, 963
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	4 cut(s)	163, 337, 527, 658
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	138, 525, 630
SfcI	CTRYAG	3 cut(s)	264, 547, 615
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
Sse9I	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 912, 925
SsiI	CCGC	3 cut(s)	341, 635, 855
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	198, 540
StyD4I	CCNGG	3 cut(s)	136, 523, 628
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	563
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	599, 902
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 912, 925
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	515, 596, 604
Tru1I	TTAA	4 cut(s)	248, 287, 671, 963
Tru9I	TTAA	4 cut(s)	248, 287, 671, 963
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	554, 649
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	2 cut(s)	554, 649
TspDTI	ATGAA	4 cut(s)	41, 576, 594, 835
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	3 cut(s)	472, 583, 912
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	833
XspI	CTAG	2 cut(s)	198, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.