E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4029, 4878 |
| Acc36I | ACCTGC | 2 cut(s) | 607, 3232 |
| Acc65I | GGTACC | 1 cut(s) | 659 |
| AccB1I | GGYRCC | 3 cut(s) | 184, 497, 659 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1000, 3470 |
| AccBSI | CCGCTC | 4 cut(s) | 147, 361, 561, 3766 |
| AccI | GTMKAC | 3 cut(s) | 1432, 2996, 3187 |
| AccII | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| AcsI | RAATTY | 9 cut(s) | 1395, 1981, 2095, 2538, 4125, 4132, 4178, 4218, 4633 |
| AcyI | GRCGYC | 1 cut(s) | 3634 |
| AflIII | ACRYGT | 1 cut(s) | 1852 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5236 |
| AjnI | CCWGG | 6 cut(s) | 1645, 1969, 2242, 4739, 5077, 5455 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 414, 446, 2391, 2423 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 440, 472 |
| Alw21I | GWGCWC | 8 cut(s) | 282, 680, 769, 949, 2746, 2806, 3101, 5443 |
| Alw44I | GTGCAC | 2 cut(s) | 2742, 5439 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 1391, 1991, 2243, 2957, 2978, 3470, 3512 |
| Ama87I | CYCGRG | 1 cut(s) | 2898 |
| AoxI | GGCC | 9 cut(s) | 30, 1604, 1717, 2894, 3160, 3723, 3845, 4742, 5543 |
| ApaLI | GTGCAC | 2 cut(s) | 2742, 5439 |
| ApoI | RAATTY | 9 cut(s) | 1395, 1981, 2095, 2538, 4125, 4132, 4178, 4218, 4633 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5530, 5562 |
| AseI | ATTAAT | 2 cut(s) | 1757, 2625 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1399, 2886, 5503 |
| Asp718I | GGTACC | 1 cut(s) | 659 |
| AspA2I | CCTAGG | 1 cut(s) | 367 |
| AspLEI | GCGC | 9 cut(s) | 90, 133, 155, 806, 4440, 5031, 5415, 5417, 5591 |
| AsuC2I | CCSGG | 1 cut(s) | 2034 |
| AsuHPI | GGTGA | 6 cut(s) | 763, 2133, 4429, 4553, 4712, 5012 |
| AsuII | TTCGAA | 1 cut(s) | 2185 |
| AsuNHI | GCTAGC | 1 cut(s) | 3596 |
| AvaI | CYCGRG | 1 cut(s) | 2898 |
| AvaII | GGWCC | 6 cut(s) | 162, 193, 1541, 1954, 3039, 4562 |
| AvrII | CCTAGG | 1 cut(s) | 367 |
| AxyI | CCTNAGG | 1 cut(s) | 4173 |
| BaeGI | GKGCMC | 5 cut(s) | 472, 2034, 2746, 4553, 5443 |
| BamHI | GGATCC | 1 cut(s) | 5672 |
| BanI | GGYRCC | 3 cut(s) | 184, 497, 659 |
| BanII | GRGCYC | 2 cut(s) | 4093, 5360 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2538, 2570 |
| BauI | CACGAG | 3 cut(s) | 281, 1620, 4350 |
| BbsI | GAAGAC | 7 cut(s) | 516, 789, 1593, 4244, 4321, 4358, 5180 |
| Bbv12I | GWGCWC | 8 cut(s) | 282, 680, 769, 949, 2746, 2806, 3101, 5443 |
| BbvCI | CCTCAGC | 3 cut(s) | 37, 3417, 4116 |
| BceAI | ACGGC | 1 cut(s) | 794 |
| BciT130I | CCWGG | 6 cut(s) | 1647, 1971, 2244, 4741, 5079, 5457 |
| BciVI | GTATCC | 2 cut(s) | 2467, 5336 |
| BclI | TGATCA | 2 cut(s) | 5320, 5335 |
| BcnI | CCSGG | 1 cut(s) | 2034 |
| BfmI | CTRYAG | 8 cut(s) | 984, 1094, 1773, 2166, 2877, 2970, 3492, 5526 |
| BfoI | RGCGCY | 1 cut(s) | 4441 |
| BfuAI | ACCTGC | 2 cut(s) | 607, 3232 |
| BfuI | GTATCC | 2 cut(s) | 2467, 5336 |
| BlnI | CCTAGG | 1 cut(s) | 367 |
| BlpI | GCTNAGC | 4 cut(s) | 357, 2869, 3516, 4932 |
| Bme1390I | CCNGG | 7 cut(s) | 1647, 1971, 2034, 2244, 4741, 5079, 5457 |
| Bme18I | GGWCC | 6 cut(s) | 162, 193, 1541, 1954, 3039, 4562 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5236 |
| BmeT110I | CYCGRG | 1 cut(s) | 2898 |
| BmrFI | CCNGG | 7 cut(s) | 1647, 1971, 2034, 2244, 4741, 5079, 5457 |
| BmrI | ACTGGG | 3 cut(s) | 2745, 4563, 5550 |
| BmtI | GCTAGC | 1 cut(s) | 3600 |
| BmuI | ACTGGG | 3 cut(s) | 2745, 4563, 5550 |
| BpiI | GAAGAC | 7 cut(s) | 516, 789, 1593, 4244, 4321, 4358, 5180 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 20, 52 |
| BpmI | CTGGAG | 4 cut(s) | 1266, 2161, 3897, 5127 |
| Bpu10I | CCTNAGC | 3 cut(s) | 37, 3417, 4116 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 357, 2869, 3516, 4932 |
| Bpu14I | TTCGAA | 1 cut(s) | 2185 |
| BpuEI | CTTGAG | 3 cut(s) | 554, 4592, 5399 |
| BpuMI | CCSGG | 1 cut(s) | 2034 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2022, 2651, 5565 |
| BsaHI | GRCGYC | 1 cut(s) | 3634 |
| BsaI | GGTCTC | 2 cut(s) | 2370, 5303 |
| BsaWI | WCCGGW | 1 cut(s) | 4464 |
| Bse118I | RCCGGY | 1 cut(s) | 181 |
| Bse21I | CCTNAGG | 1 cut(s) | 4173 |
| Bse3DI | GCAATG | 3 cut(s) | 3561, 4702, 5016 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2022, 2651, 5565 |
| BseBI | CCWGG | 6 cut(s) | 1647, 1971, 2244, 4741, 5079, 5457 |
| BseJI | GATNNNNATC | 3 cut(s) | 2022, 2651, 5565 |
| BseMI | GCAATG | 3 cut(s) | 3561, 4702, 5016 |
| BsePI | GCGCGC | 1 cut(s) | 5413 |
| BseRI | GAGGAG | 4 cut(s) | 680, 2743, 3894, 4707 |
| BseSI | GKGCMC | 5 cut(s) | 472, 2034, 2746, 4553, 5443 |
| BseYI | CCCAGC | 1 cut(s) | 3581 |
| BsgI | GTGCAG | 1 cut(s) | 3764 |
| Bsh1236I | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5514 |
| BshFI | GGCC | 9 cut(s) | 32, 1606, 1719, 2896, 3162, 3725, 3847, 4744, 5545 |
| BshNI | GGYRCC | 3 cut(s) | 184, 497, 659 |
| BsiEI | CGRYCG | 1 cut(s) | 5514 |
| BsiHKAI | GWGCWC | 8 cut(s) | 282, 680, 769, 949, 2746, 2806, 3101, 5443 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2898 |
| BsiSI | CCGG | 7 cut(s) | 16, 182, 501, 2034, 3380, 4465, 4975 |
| BslFI | GGGAC | 4 cut(s) | 1058, 3248, 4722, 5551 |
| BsmBI | CGTCTC | 2 cut(s) | 101, 3348 |
| BsmFI | GGGAC | 4 cut(s) | 1058, 3248, 4722, 5551 |
| BsmI | GAATGC | 4 cut(s) | 1365, 4437, 4756, 5503 |
| BsnI | GGCC | 9 cut(s) | 32, 1606, 1719, 2896, 3162, 3725, 3847, 4744, 5545 |
| Bso31I | GGTCTC | 2 cut(s) | 2370, 5303 |
| BsoBI | CYCGRG | 1 cut(s) | 2898 |
| Bsp119I | TTCGAA | 1 cut(s) | 2185 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 357, 2869, 3516, 4932 |
| Bsp19I | CCATGG | 2 cut(s) | 189, 1198 |
| BspANI | GGCC | 9 cut(s) | 32, 1606, 1719, 2896, 3162, 3725, 3847, 4744, 5545 |
| BspFNI | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| BspHI | TCATGA | 5 cut(s) | 727, 1102, 4594, 5580, 5687 |
| BspMAI | CTGCAG | 3 cut(s) | 1098, 1777, 5530 |
| BspMI | ACCTGC | 2 cut(s) | 607, 3232 |
| BspOI | GCTAGC | 1 cut(s) | 3600 |
| BspQI | GCTCTTC | 3 cut(s) | 2616, 3089, 4836 |
| BspT104I | TTCGAA | 1 cut(s) | 2185 |
| BspT107I | GGYRCC | 3 cut(s) | 184, 497, 659 |
| BspTNI | GGTCTC | 2 cut(s) | 2370, 5303 |
| BsrBI | CCGCTC | 4 cut(s) | 147, 361, 561, 3766 |
| BsrDI | GCAATG | 3 cut(s) | 3561, 4702, 5016 |
| BsrFI | RCCGGY | 1 cut(s) | 181 |
| BssAI | RCCGGY | 1 cut(s) | 181 |
| BssHII | GCGCGC | 1 cut(s) | 5413 |
| BssNI | GRCGYC | 1 cut(s) | 3634 |
| BssSI | CACGAG | 3 cut(s) | 281, 1620, 4350 |
| BssT1I | CCWWGG | 7 cut(s) | 189, 367, 1198, 1917, 2529, 2688, 5622 |
| Bst2BI | CACGAG | 3 cut(s) | 281, 1620, 4350 |
| Bst2UI | CCWGG | 6 cut(s) | 1647, 1971, 2244, 4741, 5079, 5457 |
| Bst6I | CTCTTC | 9 cut(s) | 121, 2616, 2629, 2877, 3089, 3151, 3369, 4836, 5133 |
| BstACI | GRCGYC | 1 cut(s) | 3634 |
| BstBI | TTCGAA | 1 cut(s) | 2185 |
| BstDSI | CCRYGG | 3 cut(s) | 189, 1198, 5035 |
| BstFNI | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| BstH2I | RGCGCY | 1 cut(s) | 4441 |
| BstHHI | GCGC | 9 cut(s) | 90, 133, 155, 806, 4440, 5031, 5415, 5417, 5591 |
| BstMCI | CGRYCG | 1 cut(s) | 5514 |
| BstNI | CCWGG | 6 cut(s) | 1647, 1971, 2244, 4741, 5079, 5457 |
| BstNSI | RCATGY | 7 cut(s) | 1127, 1856, 2205, 3379, 4287, 4624, 5589 |
| BstSCI | CCNGG | 7 cut(s) | 1645, 1969, 2032, 2242, 4739, 5077, 5455 |
| BstSFI | CTRYAG | 8 cut(s) | 984, 1094, 1773, 2166, 2877, 2970, 3492, 5526 |
| BstSLI | GKGCMC | 5 cut(s) | 472, 2034, 2746, 4553, 5443 |
| BstUI | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| BstV2I | GAAGAC | 7 cut(s) | 516, 789, 1593, 4244, 4321, 4358, 5180 |
| BstX2I | RGATCY | 5 cut(s) | 1672, 1846, 2239, 3920, 5672 |
| BstYI | RGATCY | 5 cut(s) | 1672, 1846, 2239, 3920, 5672 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4173 |
| BsuI | GTATCC | 2 cut(s) | 2467, 5336 |
| BsuRI | GGCC | 9 cut(s) | 32, 1606, 1719, 2896, 3162, 3725, 3847, 4744, 5545 |
| BtgI | CCRYGG | 3 cut(s) | 189, 1198, 5035 |
| BtgZI | GCGATG | 1 cut(s) | 414 |
| BtsI | GCAGTG | 3 cut(s) | 1956, 5346, 5475 |
| BveI | ACCTGC | 2 cut(s) | 607, 3232 |
| CaiI | CAGNNNCTG | 7 cut(s) | 1391, 1991, 2243, 2957, 2978, 3470, 3512 |
| CciI | TCATGA | 5 cut(s) | 727, 1102, 4594, 5580, 5687 |
| CfoI | GCGC | 9 cut(s) | 90, 133, 155, 806, 4440, 5031, 5415, 5417, 5591 |
| Cfr10I | RCCGGY | 1 cut(s) | 181 |
| CseI | GACGC | 3 cut(s) | 1152, 2076, 3642 |
| CsiI | ACCWGGT | 1 cut(s) | 1969 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1839, 1874, 2136, 2171, 5247, 5282 |
| DraI | TTTAAA | 3 cut(s) | 2218, 2286, 4131 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5236 |
| Eam1104I | CTCTTC | 9 cut(s) | 121, 2616, 2629, 2877, 3089, 3151, 3369, 4836, 5133 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5236 |
| EarI | CTCTTC | 9 cut(s) | 121, 2616, 2629, 2877, 3089, 3151, 3369, 4836, 5133 |
| EciI | GGCGGA | 4 cut(s) | 41, 5321, 5442, 5573 |
| Eco130I | CCWWGG | 7 cut(s) | 189, 367, 1198, 1917, 2529, 2688, 5622 |
| Eco24I | GRGCYC | 2 cut(s) | 4093, 5360 |
| Eco31I | GGTCTC | 2 cut(s) | 2370, 5303 |
| Eco32I | GATATC | 2 cut(s) | 3313, 5125 |
| Eco47I | GGWCC | 6 cut(s) | 162, 193, 1541, 1954, 3039, 4562 |
| Eco81I | CCTNAGG | 1 cut(s) | 4173 |
| Eco88I | CYCGRG | 1 cut(s) | 2898 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1541, 3161, 4562 |
| EcoRII | CCWGG | 6 cut(s) | 1645, 1969, 2242, 4739, 5077, 5455 |
| EcoRV | GATATC | 2 cut(s) | 3313, 5125 |
| EcoT14I | CCWWGG | 7 cut(s) | 189, 367, 1198, 1917, 2529, 2688, 5622 |
| EcoT22I | ATGCAT | 1 cut(s) | 3292 |
| EcoT38I | GRGCYC | 2 cut(s) | 4093, 5360 |
| ErhI | CCWWGG | 7 cut(s) | 189, 367, 1198, 1917, 2529, 2688, 5622 |
| Esp3I | CGTCTC | 2 cut(s) | 101, 3348 |
| FaqI | GGGAC | 4 cut(s) | 1058, 3248, 4722, 5551 |
| FauI | CCCGC | 4 cut(s) | 15, 152, 184, 554 |
| FbaI | TGATCA | 2 cut(s) | 5320, 5335 |
| FblI | GTMKAC | 3 cut(s) | 1432, 2996, 3187 |
| FriOI | GRGCYC | 2 cut(s) | 4093, 5360 |
| GlaI | GCGC | 9 cut(s) | 89, 132, 154, 805, 4439, 5030, 5414, 5416, 5590 |
| GsaI | CCCAGC | 1 cut(s) | 3585 |
| GsuI | CTGGAG | 4 cut(s) | 1266, 2161, 3897, 5127 |
| HaeII | RGCGCY | 1 cut(s) | 4441 |
| HaeIII | GGCC | 9 cut(s) | 32, 1606, 1719, 2896, 3162, 3725, 3847, 4744, 5545 |
| HapII | CCGG | 7 cut(s) | 16, 182, 501, 2034, 3380, 4465, 4975 |
| HgaI | GACGC | 3 cut(s) | 1152, 2076, 3642 |
| HhaI | GCGC | 9 cut(s) | 90, 133, 155, 806, 4440, 5031, 5415, 5417, 5591 |
| Hin1I | GRCGYC | 1 cut(s) | 3634 |
| Hin6I | GCGC | 9 cut(s) | 88, 131, 153, 804, 4438, 5029, 5413, 5415, 5589 |
| HinP1I | GCGC | 9 cut(s) | 88, 131, 153, 804, 4438, 5029, 5413, 5415, 5589 |
| HincII | GTYRAC | 8 cut(s) | 124, 855, 1083, 2173, 2570, 2997, 4275, 4866 |
| HindII | GTYRAC | 8 cut(s) | 124, 855, 1083, 2173, 2570, 2997, 4275, 4866 |
| HindIII | AAGCTT | 6 cut(s) | 1898, 2211, 2355, 2561, 2866, 5603 |
| HpaI | GTTAAC | 3 cut(s) | 124, 855, 2173 |
| HpaII | CCGG | 7 cut(s) | 16, 182, 501, 2034, 3380, 4465, 4975 |
| HphI | GGTGA | 6 cut(s) | 763, 2133, 4429, 4553, 4712, 5012 |
| Hpy99I | CGWCG | 2 cut(s) | 2070, 3027 |
| HpyCH4IV | ACGT | 3 cut(s) | 680, 2047, 5094 |
| HpySE526I | ACGT | 3 cut(s) | 680, 2047, 5094 |
| Hsp92I | GRCGYC | 1 cut(s) | 3634 |
| HspAI | GCGC | 9 cut(s) | 88, 131, 153, 804, 4438, 5029, 5413, 5415, 5589 |
| KpnI | GGTACC | 1 cut(s) | 663 |
| Ksp22I | TGATCA | 2 cut(s) | 5320, 5335 |
| KspAI | GTTAAC | 3 cut(s) | 124, 855, 2173 |
| LguI | GCTCTTC | 3 cut(s) | 2616, 3089, 4836 |
| MabI | ACCWGGT | 1 cut(s) | 1969 |
| MaeII | ACGT | 3 cut(s) | 680, 2047, 5094 |
| MbiI | CCGCTC | 4 cut(s) | 147, 361, 561, 3766 |
| MfeI | CAATTG | 2 cut(s) | 3950, 5046 |
| MflI | RGATCY | 5 cut(s) | 1672, 1846, 2239, 3920, 5672 |
| MmeI | TCCRAC | 6 cut(s) | 1318, 1542, 2239, 3960, 4825, 5247 |
| Mph1103I | ATGCAT | 1 cut(s) | 3292 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1399, 2886, 5503 |
| MslI | CAYNNNNRTG | 3 cut(s) | 780, 822, 3342 |
| MspA1I | CMGCKG | 2 cut(s) | 1052, 3416 |
| MspI | CCGG | 7 cut(s) | 16, 182, 501, 2034, 3380, 4465, 4975 |
| MspR9I | CCNGG | 7 cut(s) | 1647, 1971, 2034, 2244, 4741, 5079, 5457 |
| MunI | CAATTG | 2 cut(s) | 3950, 5046 |
| Mva1269I | GAATGC | 4 cut(s) | 1365, 4437, 4756, 5503 |
| MvaI | CCWGG | 6 cut(s) | 1647, 1971, 2244, 4741, 5079, 5457 |
| MvnI | CGCG | 6 cut(s) | 131, 153, 220, 461, 5415, 5591 |
| NciI | CCSGG | 1 cut(s) | 2034 |
| NcoI | CCATGG | 2 cut(s) | 189, 1198 |
| NheI | GCTAGC | 1 cut(s) | 3596 |
| NmeAIII | GCCGAG | 1 cut(s) | 1906 |
| NmuCI | GTSAC | 6 cut(s) | 669, 885, 1801, 3446, 3963, 4700 |
| NsiI | ATGCAT | 1 cut(s) | 3292 |
| NspI | RCATGY | 7 cut(s) | 1127, 1856, 2205, 3379, 4287, 4624, 5589 |
| NspV | TTCGAA | 1 cut(s) | 2185 |
| PaeI | GCATGC | 2 cut(s) | 1127, 3379 |
| PaeR7I | CTCGAG | 1 cut(s) | 2898 |
| PagI | TCATGA | 5 cut(s) | 727, 1102, 4594, 5580, 5687 |
| PauI | GCGCGC | 1 cut(s) | 5413 |
| PciI | ACATGT | 1 cut(s) | 1852 |
| PciSI | GCTCTTC | 3 cut(s) | 2616, 3089, 4836 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 73, 1016, 2053, 2905 |
| PctI | GAATGC | 4 cut(s) | 1365, 4437, 4756, 5503 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1399, 2886, 5503 |
| PflFI | GACNNNGTC | 1 cut(s) | 4706 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1000, 3470 |
| PpuMI | RGGWCCY | 2 cut(s) | 1541, 4562 |
| PscI | ACATGT | 1 cut(s) | 1852 |
| PshBI | ATTAAT | 2 cut(s) | 1757, 2625 |
| PsiI | TTATAA | 2 cut(s) | 4029, 4878 |
| Psp5II | RGGWCCY | 2 cut(s) | 1541, 4562 |
| Psp6I | CCWGG | 6 cut(s) | 1645, 1969, 2242, 4739, 5077, 5455 |
| PspFI | CCCAGC | 1 cut(s) | 3581 |
| PspGI | CCWGG | 6 cut(s) | 1645, 1969, 2242, 4739, 5077, 5455 |
| PspPPI | RGGWCCY | 2 cut(s) | 1541, 4562 |
| PspXI | VCTCGAGB | 1 cut(s) | 2898 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 61, 93, 2953, 2985 |
| PstI | CTGCAG | 3 cut(s) | 1098, 1777, 5530 |
| PstNI | CAGNNNCTG | 7 cut(s) | 1391, 1991, 2243, 2957, 2978, 3470, 3512 |
| PsuI | RGATCY | 5 cut(s) | 1672, 1846, 2239, 3920, 5672 |
| PsyI | GACNNNGTC | 1 cut(s) | 4706 |
| PteI | GCGCGC | 1 cut(s) | 5413 |
| PvuII | CAGCTG | 2 cut(s) | 1052, 3416 |
| RseI | CAYNNNNRTG | 3 cut(s) | 780, 822, 3342 |
| SalI | GTCGAC | 1 cut(s) | 2995 |
| SapI | GCTCTTC | 3 cut(s) | 2616, 3089, 4836 |
| ScrFI | CCNGG | 7 cut(s) | 1647, 1971, 2034, 2244, 4741, 5079, 5457 |
| SexAI | ACCWGGT | 1 cut(s) | 1969 |
| SfcI | CTRYAG | 8 cut(s) | 984, 1094, 1773, 2166, 2877, 2970, 3492, 5526 |
| Sfr274I | CTCGAG | 1 cut(s) | 2898 |
| SfuI | TTCGAA | 1 cut(s) | 2185 |
| SinI | GGWCC | 6 cut(s) | 162, 193, 1541, 1954, 3039, 4562 |
| SlaI | CTCGAG | 1 cut(s) | 2898 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 780, 822, 3342 |
| SmlI | CTYRAG | 4 cut(s) | 569, 2898, 4571, 5378 |
| SmoI | CTYRAG | 4 cut(s) | 569, 2898, 4571, 5378 |
| SphI | GCATGC | 2 cut(s) | 1127, 3379 |
| SspI | AATATT | 4 cut(s) | 1810, 2134, 4535, 5250 |
| StyD4I | CCNGG | 7 cut(s) | 1645, 1969, 2032, 2242, 4739, 5077, 5455 |
| StyI | CCWWGG | 7 cut(s) | 189, 367, 1198, 1917, 2529, 2688, 5622 |
| TaiI | ACGT | 3 cut(s) | 683, 2050, 5097 |
| TaqI | TCGA | 7 cut(s) | 1010, 2185, 2800, 2899, 2996, 4312, 5510 |
| TaqII | GACCGA | 2 cut(s) | 3027, 4880 |
| TatI | WGTACW | 6 cut(s) | 864, 1378, 1761, 4051, 4148, 5142 |
| TauI | GCSGC | 5 cut(s) | 131, 231, 1019, 2794, 4846 |
| TseFI | GTSAC | 6 cut(s) | 669, 885, 1801, 3446, 3963, 4700 |
| Tsp45I | GTSAC | 6 cut(s) | 669, 885, 1801, 3446, 3963, 4700 |
| TspGWI | ACGGA | 5 cut(s) | 510, 783, 2106, 4439, 5024 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4706 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1000, 3470 |
| VneI | GTGCAC | 2 cut(s) | 2742, 5439 |
| VpaK11BI | GGWCC | 6 cut(s) | 162, 193, 1541, 1954, 3039, 4562 |
| VspI | ATTAAT | 2 cut(s) | 1757, 2625 |
| XapI | RAATTY | 9 cut(s) | 1395, 1981, 2095, 2538, 4125, 4132, 4178, 4218, 4633 |
| XbaI | TCTAGA | 1 cut(s) | 4987 |
| XceI | RCATGY | 7 cut(s) | 1127, 1856, 2205, 3379, 4287, 4624, 5589 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 4718, 5432 |
| XhoI | CTCGAG | 1 cut(s) | 2898 |
| XmaJI | CCTAGG | 1 cut(s) | 367 |
| XmiI | GTMKAC | 3 cut(s) | 1432, 2996, 3187 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1399, 2886, 5503 |
| Zsp2I | ATGCAT | 1 cut(s) | 3292 |