E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 556 |
| AccBSI | CCGCTC | 1 cut(s) | 1183 |
| AccI | GTMKAC | 1 cut(s) | 947 |
| AciI | CCGC | 4 cut(s) | 341, 737, 969, 1183 |
| AclWI | GGATC | 4 cut(s) | 171, 332, 535, 643 |
| AcsI | RAATTY | 3 cut(s) | 472, 583, 1026 |
| AcuI | CTGAAG | 4 cut(s) | 131, 241, 708, 1088 |
| AcyI | GRCGYC | 1 cut(s) | 553 |
| AfaI | GTAC | 6 cut(s) | 254, 466, 688, 716, 1222, 1335 |
| AfeI | AGCGCT | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 736, 737, 1071 |
| AflIII | ACRYGT | 1 cut(s) | 689 |
| AgsI | TTSAA | 5 cut(s) | 16, 127, 796, 1273, 1370 |
| AjnI | CCWGG | 2 cut(s) | 136, 730 |
| Alw21I | GWGCWC | 1 cut(s) | 1294 |
| Alw26I | GTCTC | 2 cut(s) | 496, 858 |
| AlwI | GGATC | 4 cut(s) | 171, 332, 535, 643 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 731 |
| Aor51HI | AGCGCT | 1 cut(s) | 94 |
| AoxI | GGCC | 1 cut(s) | 208 |
| ApeKI | GCWGC | 2 cut(s) | 980, 1361 |
| ApoI | RAATTY | 3 cut(s) | 472, 583, 1026 |
| AspLEI | GCGC | 2 cut(s) | 95, 1281 |
| AspS9I | GGNCC | 2 cut(s) | 32, 209 |
| AsuC2I | CCSGG | 1 cut(s) | 525 |
| AsuHPI | GGTGA | 2 cut(s) | 745, 752 |
| AvaII | GGWCC | 1 cut(s) | 32 |
| AxyI | CCTNAGG | 1 cut(s) | 99 |
| BauI | CACGAG | 1 cut(s) | 111 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| Bbv12I | GWGCWC | 1 cut(s) | 1294 |
| BbvI | GCAGC | 2 cut(s) | 992, 1348 |
| BccI | CCATC | 3 cut(s) | 572, 907, 932 |
| BciT130I | CCWGG | 2 cut(s) | 138, 732 |
| BcnI | CCSGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 2 cut(s) | 496, 858 |
| BfaI | CTAG | 2 cut(s) | 198, 1212 |
| BfmI | CTRYAG | 1 cut(s) | 264 |
| BfoI | RGCGCY | 1 cut(s) | 96 |
| BisI | GCNGC | 2 cut(s) | 981, 1362 |
| BlpI | GCTNAGC | 1 cut(s) | 1357 |
| BlsI | GCNGC | 2 cut(s) | 982, 1363 |
| BmcAI | AGTACT | 1 cut(s) | 716 |
| Bme1390I | CCNGG | 3 cut(s) | 138, 525, 732 |
| Bme18I | GGWCC | 1 cut(s) | 32 |
| BmgT120I | GGNCC | 2 cut(s) | 32, 209 |
| BmiI | GGNNCC | 2 cut(s) | 354, 1187 |
| BmrFI | CCNGG | 3 cut(s) | 138, 525, 732 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| BpmI | CTGGAG | 1 cut(s) | 649 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1047 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1357 |
| BpuMI | CCSGG | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 553 |
| BsaI | GGTCTC | 1 cut(s) | 858 |
| BsaJI | CCNNGG | 3 cut(s) | 408, 730, 731 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 736, 737, 1071 |
| Bse118I | RCCGGY | 2 cut(s) | 317, 800 |
| Bse1I | ACTGG | 3 cut(s) | 9, 84, 1228 |
| Bse21I | CCTNAGG | 1 cut(s) | 99 |
| BseBI | CCWGG | 2 cut(s) | 138, 732 |
| BseDI | CCNNGG | 3 cut(s) | 408, 730, 731 |
| BseGI | GGATG | 1 cut(s) | 943 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 736, 737, 1071 |
| BseMII | CTCAG | 2 cut(s) | 90, 1190 |
| BseNI | ACTGG | 3 cut(s) | 9, 84, 1228 |
| BseRI | GAGGAG | 1 cut(s) | 1231 |
| BseXI | GCAGC | 2 cut(s) | 992, 1348 |
| BseYI | CCCAGC | 1 cut(s) | 1263 |
| BshFI | GGCC | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1294 |
| BsiSI | CCGG | 3 cut(s) | 318, 524, 801 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 736, 737, 1071 |
| BsmAI | GTCTC | 2 cut(s) | 496, 858 |
| BsmI | GAATGC | 2 cut(s) | 802, 1333 |
| BsnI | GGCC | 1 cut(s) | 210 |
| Bso31I | GGTCTC | 1 cut(s) | 858 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1294 |
| Bsp143I | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1357 |
| BspACI | CCGC | 4 cut(s) | 341, 737, 969, 1183 |
| BspANI | GGCC | 1 cut(s) | 210 |
| BspCNI | CTCAG | 2 cut(s) | 91, 1191 |
| BspLI | GGNNCC | 2 cut(s) | 354, 1187 |
| BspMAI | CTGCAG | 1 cut(s) | 268 |
| BspPI | GGATC | 4 cut(s) | 171, 332, 535, 643 |
| BspQI | GCTCTTC | 1 cut(s) | 1104 |
| BspTNI | GGTCTC | 1 cut(s) | 858 |
| BsrBI | CCGCTC | 1 cut(s) | 1183 |
| BsrFI | RCCGGY | 2 cut(s) | 317, 800 |
| BsrI | ACTGG | 3 cut(s) | 9, 84, 1228 |
| BssAI | RCCGGY | 2 cut(s) | 317, 800 |
| BssECI | CCNNGG | 3 cut(s) | 408, 730, 731 |
| BssMI | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| BssNI | GRCGYC | 1 cut(s) | 553 |
| BssSI | CACGAG | 1 cut(s) | 111 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst2BI | CACGAG | 1 cut(s) | 111 |
| Bst2UI | CCWGG | 2 cut(s) | 138, 732 |
| Bst4CI | ACNGT | 4 cut(s) | 563, 622, 658, 1147 |
| Bst6I | CTCTTC | 4 cut(s) | 499, 879, 1104, 1117 |
| BstACI | GRCGYC | 1 cut(s) | 553 |
| BstC8I | GCNNGC | 2 cut(s) | 1234, 1354 |
| BstDEI | CTNAG | 8 cut(s) | 99, 313, 859, 926, 1047, 1199, 1250, 1357 |
| BstF5I | GGATG | 1 cut(s) | 943 |
| BstH2I | RGCGCY | 1 cut(s) | 96 |
| BstHHI | GCGC | 2 cut(s) | 95, 1281 |
| BstKTI | GATC | 5 cut(s) | 166, 340, 530, 651, 763 |
| BstMAI | GTCTC | 2 cut(s) | 496, 858 |
| BstMBI | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 216, 1358 |
| BstNI | CCWGG | 2 cut(s) | 138, 732 |
| BstNSI | RCATGY | 2 cut(s) | 347, 693 |
| BstSCI | CCNGG | 3 cut(s) | 136, 523, 730 |
| BstSFI | CTRYAG | 1 cut(s) | 264 |
| BstV1I | GCAGC | 2 cut(s) | 992, 1348 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| BstX2I | RGATCY | 3 cut(s) | 163, 337, 648 |
| BstYI | RGATCY | 3 cut(s) | 163, 337, 648 |
| Bsu36I | CCTNAGG | 1 cut(s) | 99 |
| BsuRI | GGCC | 1 cut(s) | 210 |
| BtsCI | GGATG | 1 cut(s) | 943 |
| BtsIMutI | CAGTG | 2 cut(s) | 91, 648 |
| Cac8I | GCNNGC | 2 cut(s) | 1234, 1354 |
| CaiI | CAGNNNCTG | 1 cut(s) | 731 |
| CfoI | GCGC | 2 cut(s) | 95, 1281 |
| Cfr10I | RCCGGY | 2 cut(s) | 317, 800 |
| Cfr13I | GGNCC | 2 cut(s) | 32, 209 |
| Csp6I | GTAC | 6 cut(s) | 253, 465, 687, 715, 1221, 1334 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 624, 659 |
| CviAII | CATG | 6 cut(s) | 330, 344, 382, 437, 690, 1218 |
| CviQI | GTAC | 6 cut(s) | 253, 465, 687, 715, 1221, 1334 |
| DdeI | CTNAG | 8 cut(s) | 99, 313, 859, 926, 1047, 1199, 1250, 1357 |
| DpnI | GATC | 5 cut(s) | 165, 339, 529, 650, 762 |
| DpnII | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| DraI | TTTAAA | 1 cut(s) | 774 |
| Eam1104I | CTCTTC | 4 cut(s) | 499, 879, 1104, 1117 |
| EarI | CTCTTC | 4 cut(s) | 499, 879, 1104, 1117 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco31I | GGTCTC | 1 cut(s) | 858 |
| Eco47I | GGWCC | 1 cut(s) | 32 |
| Eco47III | AGCGCT | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 4 cut(s) | 131, 241, 708, 1088 |
| Eco81I | CCTNAGG | 1 cut(s) | 99 |
| EcoO109I | RGGNCCY | 1 cut(s) | 32 |
| EcoRI | GAATTC | 1 cut(s) | 472 |
| EcoRII | CCWGG | 2 cut(s) | 136, 730 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| EcoT22I | ATGCAT | 1 cut(s) | 877 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaeI | CATG | 6 cut(s) | 333, 347, 385, 440, 693, 1221 |
| FatI | CATG | 6 cut(s) | 329, 343, 381, 436, 689, 1217 |
| FauI | CCCGC | 1 cut(s) | 730 |
| FblI | GTMKAC | 1 cut(s) | 947 |
| Fnu4HI | GCNGC | 2 cut(s) | 981, 1362 |
| FokI | GGATG | 1 cut(s) | 950 |
| Fsp4HI | GCNGC | 2 cut(s) | 981, 1362 |
| FspBI | CTAG | 2 cut(s) | 198, 1212 |
| GlaI | GCGC | 2 cut(s) | 94, 1280 |
| GluI | GCNGC | 2 cut(s) | 981, 1362 |
| GsaI | CCCAGC | 1 cut(s) | 1267 |
| GsuI | CTGGAG | 1 cut(s) | 649 |
| HaeII | RGCGCY | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 210 |
| HapII | CCGG | 3 cut(s) | 318, 524, 801 |
| HhaI | GCGC | 2 cut(s) | 95, 1281 |
| Hin1I | GRCGYC | 1 cut(s) | 553 |
| Hin1II | CATG | 6 cut(s) | 333, 347, 385, 440, 693, 1221 |
| Hin6I | GCGC | 2 cut(s) | 93, 1279 |
| HinP1I | GCGC | 2 cut(s) | 93, 1279 |
| HincII | GTYRAC | 3 cut(s) | 445, 661, 1058 |
| HindII | GTYRAC | 3 cut(s) | 445, 661, 1058 |
| HindIII | AAGCTT | 4 cut(s) | 389, 843, 1049, 1354 |
| HinfI | GANTC | 5 cut(s) | 278, 515, 596, 604, 1201 |
| HpaII | CCGG | 3 cut(s) | 318, 524, 801 |
| HphI | GGTGA | 2 cut(s) | 745, 752 |
| Hpy166II | GTNNAC | 4 cut(s) | 445, 661, 948, 1058 |
| Hpy188I | TCNGA | 6 cut(s) | 422, 471, 727, 1033, 1152, 1313 |
| Hpy188III | TCNNGA | 5 cut(s) | 98, 113, 575, 1015, 1245 |
| Hpy8I | GTNNAC | 4 cut(s) | 445, 661, 948, 1058 |
| Hpy99I | CGWCG | 1 cut(s) | 558 |
| HpyAV | CCTTC | 6 cut(s) | 179, 419, 680, 732, 1012, 1112 |
| HpyCH4III | ACNGT | 4 cut(s) | 563, 622, 658, 1147 |
| HpyCH4IV | ACGT | 2 cut(s) | 535, 553 |
| HpyCH4V | TGCA | 6 cut(s) | 266, 305, 695, 875, 1232, 1256 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 216, 1358 |
| HpyF3I | CTNAG | 8 cut(s) | 99, 313, 859, 926, 1047, 1199, 1250, 1357 |
| HpySE526I | ACGT | 2 cut(s) | 535, 553 |
| Hsp92I | GRCGYC | 1 cut(s) | 553 |
| Hsp92II | CATG | 6 cut(s) | 333, 347, 385, 440, 693, 1221 |
| HspAI | GCGC | 2 cut(s) | 93, 1279 |
| Kzo9I | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| LguI | GCTCTTC | 1 cut(s) | 1104 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| Lsp1109I | GCAGC | 2 cut(s) | 992, 1348 |
| MaeI | CTAG | 2 cut(s) | 198, 1212 |
| MaeII | ACGT | 2 cut(s) | 535, 553 |
| MaeIII | GTNAC | 4 cut(s) | 478, 563, 616, 751 |
| MalI | GATC | 5 cut(s) | 165, 339, 529, 650, 762 |
| MbiI | CCGCTC | 1 cut(s) | 1183 |
| MboI | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| MboII | GAAGA | 9 cut(s) | 89, 134, 137, 486, 605, 613, 896, 1091, 1134 |
| MflI | RGATCY | 3 cut(s) | 163, 337, 648 |
| MhlI | GDGCHC | 1 cut(s) | 1294 |
| MluCI | AATT | 8 cut(s) | 16, 119, 152, 366, 472, 583, 1026, 1039 |
| MlyI | GAGTC | 2 cut(s) | 287, 1210 |
| MnlI | CCTC | 5 cut(s) | 94, 642, 1183, 1247, 1252 |
| Mph1103I | ATGCAT | 1 cut(s) | 877 |
| MseI | TTAA | 5 cut(s) | 248, 287, 705, 773, 1077 |
| MspI | CCGG | 3 cut(s) | 318, 524, 801 |
| MspR9I | CCNGG | 3 cut(s) | 138, 525, 732 |
| Mva1269I | GAATGC | 2 cut(s) | 802, 1333 |
| MvaI | CCWGG | 2 cut(s) | 138, 732 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 216, 1358 |
| NciI | CCSGG | 1 cut(s) | 525 |
| NdeII | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| NlaIII | CATG | 6 cut(s) | 333, 347, 385, 440, 693, 1221 |
| NlaIV | GGNNCC | 2 cut(s) | 354, 1187 |
| NmeAIII | GCCGAG | 3 cut(s) | 397, 520, 934 |
| NmuCI | GTSAC | 1 cut(s) | 751 |
| NsiI | ATGCAT | 1 cut(s) | 877 |
| NspI | RCATGY | 2 cut(s) | 347, 693 |
| PasI | CCCWGGG | 1 cut(s) | 731 |
| PciI | ACATGT | 1 cut(s) | 689 |
| PciSI | GCTCTTC | 1 cut(s) | 1104 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 541 |
| PctI | GAATGC | 2 cut(s) | 802, 1333 |
| PfeI | GAWTC | 3 cut(s) | 515, 596, 604 |
| PkrI | GCNGC | 2 cut(s) | 982, 1363 |
| PleI | GAGTC | 2 cut(s) | 286, 1209 |
| PpsI | GAGTC | 2 cut(s) | 286, 1209 |
| PpuMI | RGGWCCY | 1 cut(s) | 32 |
| PscI | ACATGT | 1 cut(s) | 689 |
| Psp5II | RGGWCCY | 1 cut(s) | 32 |
| Psp6I | CCWGG | 2 cut(s) | 136, 730 |
| PspFI | CCCAGC | 1 cut(s) | 1263 |
| PspGI | CCWGG | 2 cut(s) | 136, 730 |
| PspN4I | GGNNCC | 2 cut(s) | 354, 1187 |
| PspPI | GGNCC | 2 cut(s) | 32, 209 |
| PspPPI | RGGWCCY | 1 cut(s) | 32 |
| PstI | CTGCAG | 1 cut(s) | 268 |
| PstNI | CAGNNNCTG | 1 cut(s) | 731 |
| PsuI | RGATCY | 3 cut(s) | 163, 337, 648 |
| RsaI | GTAC | 6 cut(s) | 254, 466, 688, 716, 1222, 1335 |
| RsaNI | GTAC | 6 cut(s) | 253, 465, 687, 715, 1221, 1334 |
| SapI | GCTCTTC | 1 cut(s) | 1104 |
| SaqAI | TTAA | 5 cut(s) | 248, 287, 705, 773, 1077 |
| SatI | GCNGC | 2 cut(s) | 981, 1362 |
| Sau3AI | GATC | 5 cut(s) | 163, 337, 527, 648, 760 |
| Sau96I | GGNCC | 2 cut(s) | 32, 209 |
| ScaI | AGTACT | 1 cut(s) | 716 |
| SchI | GAGTC | 2 cut(s) | 287, 1210 |
| ScrFI | CCNGG | 3 cut(s) | 138, 525, 732 |
| SduI | GDGCHC | 1 cut(s) | 1294 |
| SfcI | CTRYAG | 1 cut(s) | 264 |
| SinI | GGWCC | 1 cut(s) | 32 |
| Sse9I | AATT | 8 cut(s) | 16, 119, 152, 366, 472, 583, 1026, 1039 |
| SsiI | CCGC | 4 cut(s) | 341, 737, 969, 1183 |
| SspI | AATATT | 1 cut(s) | 301 |
| SspMI | CTAG | 2 cut(s) | 198, 1212 |
| StyD4I | CCNGG | 3 cut(s) | 136, 523, 730 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 4 cut(s) | 563, 622, 658, 1147 |
| TaiI | ACGT | 2 cut(s) | 538, 556 |
| TaqI | TCGA | 4 cut(s) | 599, 1016, 1288, 1325 |
| TaqII | GACCGA | 1 cut(s) | 223 |
| TasI | AATT | 8 cut(s) | 16, 119, 152, 366, 472, 583, 1026, 1039 |
| TatI | WGTACW | 5 cut(s) | 252, 686, 714, 1220, 1333 |
| TfiI | GAWTC | 3 cut(s) | 515, 596, 604 |
| Tru1I | TTAA | 5 cut(s) | 248, 287, 705, 773, 1077 |
| Tru9I | TTAA | 5 cut(s) | 248, 287, 705, 773, 1077 |
| TscAI | CASTG | 2 cut(s) | 91, 648 |
| TseFI | GTSAC | 1 cut(s) | 751 |
| TseI | GCWGC | 2 cut(s) | 980, 1361 |
| Tsp45I | GTSAC | 1 cut(s) | 751 |
| TspDTI | ATGAA | 7 cut(s) | 41, 425, 576, 949, 1131, 1197, 1311 |
| TspRI | CASTG | 2 cut(s) | 91, 648 |
| VpaK11BI | GGWCC | 1 cut(s) | 32 |
| XapI | RAATTY | 3 cut(s) | 472, 583, 1026 |
| XceI | RCATGY | 2 cut(s) | 347, 693 |
| XmiI | GTMKAC | 1 cut(s) | 947 |
| XspI | CTAG | 2 cut(s) | 198, 1212 |
| ZraI | GACGTC | 1 cut(s) | 554 |
| ZrmI | AGTACT | 1 cut(s) | 716 |
| Zsp2I | ATGCAT | 1 cut(s) | 877 |