Rw6G000110

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
192765 .. 194315
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000110.1

Sequence Viewer

Length: 1374 bp
ATGCCGTCCAGTTTCAATTTGTTTATGAAAGGACCTATTGTGAAAAAGTCATCTGGTAGCAGTTCTGGGAAGCCAGAAGATACCAGTGGAAGCGCTCCTGAGGTTTCAGCTCGTGAGAAATTATTGAACGAACAGCCTGGTCTTCTTCAGCAATTTGGAATGGATCTCCTTCCTGTGTTTATACAGATTTATGGCTCTAGTGTAAATGGCCCTGTTCGCCACAAATGTCTATCGGTCATCGGCAAGTTAATGTACTTCAGCCCTGCAGAGATGATTGAGTCTTTGTTAAGTATGACAAATATTGCAAGTTTCTTAGCCGGTGTTTTAGCATGGAAAGATCCGCATGTCTTGGTTCCTGCTCTCCAAATTGCCGAGATACTCATGGAGAAGCTTCCCAAGACTTTCTCCAAGGTGTTTGTCAGAGAAGGTGTGGTTCATGCTGTTGACCAACTTATTTTAGCTGGTACTCCGAATTCAGTTACTTCACAAGTCTCTTCTGCTGAAAAGGACAATGATTCTGTGCCGGGATCATCACGTTCTCGGCGTTATAGACGTCGCAACAGTAACTCAAATCCAGATGGAAATTCATTGGAAGAATCGAAGATTCCTGCTTCGGTAACTGTTGGTTCGCCTCCAAGTTCAGTGGAGATCCCAACTGTCAACTCCAGCCTTCGTGTAGCTGTGAGTACATGTGCAAAAGCGTTTAAGGACAAGTACTTCCCTTCAGACCCTGGGGCGGGTGAAGTTGGTGTCACCGATGATCTATTACATTTAAAAAATCTGTGTGTGAAGTTGAATGCCGGTGTAGATGACCCAAAAACAAAAGCAAAGGGAAAATCAAAAGCTTCTGGGTCTCGCTTAGTTGATAGTTATGCATATAAGGAAGAGTATTTGATTGGTGTGGTAGCCGAGATGGTAGCCGAACTAAGCAAAGGGGATGGTATGTCTACCTTTGAGTTCATAGGTAGCGGTGTTGTCGCAGCTTTGCTGAACTATTTTTCTTGTGGCTACTTCTCGAAGGAGAGAATTTCAGAAGCTAATTTGCCTAAGCTTCGTCAACAAGCCCTGAAGTGGTTTAAGTCATTTGTTGCTGTTGCTCTTCCTTTGAGTATTGATGAAGGAAGAGTAGCCCCAATGACTATCACAGTTCAGAAGCTACAAGGTGCTTTGTCCTCTTTAGAGCGGTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATGTACTGGAAATGCACGCCTCTCCTCTGGACTTAGTGCATTATCCCAGCCCTTGAAGTTGCGCCTATGTCGAGCACAAGGAGAAAAGGCTCTCCGAGATTATTCATCGAATGCTGTACTGATTGACCCATTAGCAAGCTTAGCTGCTGTTGAATAG

Protein Analysis

457

Amino Acids

48.97

Weight (kDa)

9.1

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 1183
AccI GTMKAC 1 cut(s) 947
AciI CCGC 4 cut(s) 341, 737, 969, 1183
AclWI GGATC 4 cut(s) 171, 332, 535, 643
AcsI RAATTY 3 cut(s) 472, 583, 1026
AcuI CTGAAG 4 cut(s) 131, 241, 708, 1088
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 6 cut(s) 254, 466, 688, 716, 1222, 1335
AfeI AGCGCT 1 cut(s) 94
AfiI CCNNNNNNNGG 3 cut(s) 736, 737, 1071
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 5 cut(s) 16, 127, 796, 1273, 1370
AjnI CCWGG 2 cut(s) 136, 730
Alw21I GWGCWC 1 cut(s) 1294
Alw26I GTCTC 2 cut(s) 496, 858
AlwI GGATC 4 cut(s) 171, 332, 535, 643
AlwNI CAGNNNCTG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 94
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 980, 1361
ApoI RAATTY 3 cut(s) 472, 583, 1026
AspLEI GCGC 2 cut(s) 95, 1281
AspS9I GGNCC 2 cut(s) 32, 209
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 745, 752
AvaII GGWCC 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 99
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 1294
BbvI GCAGC 2 cut(s) 992, 1348
BccI CCATC 3 cut(s) 572, 907, 932
BciT130I CCWGG 2 cut(s) 138, 732
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 496, 858
BfaI CTAG 2 cut(s) 198, 1212
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 2 cut(s) 981, 1362
BlpI GCTNAGC 1 cut(s) 1357
BlsI GCNGC 2 cut(s) 982, 1363
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 138, 525, 732
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 209
BmiI GGNNCC 2 cut(s) 354, 1187
BmrFI CCNGG 3 cut(s) 138, 525, 732
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 649
Bpu10I CCTNAGC 1 cut(s) 1047
Bpu1102I GCTNAGC 1 cut(s) 1357
BpuMI CCSGG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 408, 730, 731
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 737, 1071
Bse118I RCCGGY 2 cut(s) 317, 800
Bse1I ACTGG 3 cut(s) 9, 84, 1228
Bse21I CCTNAGG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 138, 732
BseDI CCNNGG 3 cut(s) 408, 730, 731
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 3 cut(s) 736, 737, 1071
BseMII CTCAG 2 cut(s) 90, 1190
BseNI ACTGG 3 cut(s) 9, 84, 1228
BseRI GAGGAG 1 cut(s) 1231
BseXI GCAGC 2 cut(s) 992, 1348
BseYI CCCAGC 1 cut(s) 1263
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1294
BsiSI CCGG 3 cut(s) 318, 524, 801
BslI CCNNNNNNNGG 3 cut(s) 736, 737, 1071
BsmAI GTCTC 2 cut(s) 496, 858
BsmI GAATGC 2 cut(s) 802, 1333
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 858
Bsp1286I GDGCHC 1 cut(s) 1294
Bsp143I GATC 5 cut(s) 163, 337, 527, 648, 760
Bsp1720I GCTNAGC 1 cut(s) 1357
BspACI CCGC 4 cut(s) 341, 737, 969, 1183
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 91, 1191
BspLI GGNNCC 2 cut(s) 354, 1187
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 4 cut(s) 171, 332, 535, 643
BspQI GCTCTTC 1 cut(s) 1104
BspTNI GGTCTC 1 cut(s) 858
BsrBI CCGCTC 1 cut(s) 1183
BsrFI RCCGGY 2 cut(s) 317, 800
BsrI ACTGG 3 cut(s) 9, 84, 1228
BssAI RCCGGY 2 cut(s) 317, 800
BssECI CCNNGG 3 cut(s) 408, 730, 731
BssMI GATC 5 cut(s) 163, 337, 527, 648, 760
BssNI GRCGYC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 138, 732
Bst4CI ACNGT 4 cut(s) 563, 622, 658, 1147
Bst6I CTCTTC 4 cut(s) 499, 879, 1104, 1117
BstACI GRCGYC 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 1234, 1354
BstDEI CTNAG 8 cut(s) 99, 313, 859, 926, 1047, 1199, 1250, 1357
BstF5I GGATG 1 cut(s) 943
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 1281
BstKTI GATC 5 cut(s) 166, 340, 530, 651, 763
BstMAI GTCTC 2 cut(s) 496, 858
BstMBI GATC 5 cut(s) 163, 337, 527, 648, 760
BstMWI GCNNNNNNNGC 2 cut(s) 216, 1358
BstNI CCWGG 2 cut(s) 138, 732
BstNSI RCATGY 2 cut(s) 347, 693
BstSCI CCNGG 3 cut(s) 136, 523, 730
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 992, 1348
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 3 cut(s) 163, 337, 648
BstYI RGATCY 3 cut(s) 163, 337, 648
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 943
BtsIMutI CAGTG 2 cut(s) 91, 648
Cac8I GCNNGC 2 cut(s) 1234, 1354
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 2 cut(s) 95, 1281
Cfr10I RCCGGY 2 cut(s) 317, 800
Cfr13I GGNCC 2 cut(s) 32, 209
Csp6I GTAC 6 cut(s) 253, 465, 687, 715, 1221, 1334
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 6 cut(s) 330, 344, 382, 437, 690, 1218
CviQI GTAC 6 cut(s) 253, 465, 687, 715, 1221, 1334
DdeI CTNAG 8 cut(s) 99, 313, 859, 926, 1047, 1199, 1250, 1357
DpnI GATC 5 cut(s) 165, 339, 529, 650, 762
DpnII GATC 5 cut(s) 163, 337, 527, 648, 760
DraI TTTAAA 1 cut(s) 774
Eam1104I CTCTTC 4 cut(s) 499, 879, 1104, 1117
EarI CTCTTC 4 cut(s) 499, 879, 1104, 1117
Eco130I CCWWGG 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 94
Eco57I CTGAAG 4 cut(s) 131, 241, 708, 1088
Eco81I CCTNAGG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 136, 730
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 6 cut(s) 333, 347, 385, 440, 693, 1221
FatI CATG 6 cut(s) 329, 343, 381, 436, 689, 1217
FauI CCCGC 1 cut(s) 730
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 2 cut(s) 981, 1362
FokI GGATG 1 cut(s) 950
Fsp4HI GCNGC 2 cut(s) 981, 1362
FspBI CTAG 2 cut(s) 198, 1212
GlaI GCGC 2 cut(s) 94, 1280
GluI GCNGC 2 cut(s) 981, 1362
GsaI CCCAGC 1 cut(s) 1267
GsuI CTGGAG 1 cut(s) 649
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 210
HapII CCGG 3 cut(s) 318, 524, 801
HhaI GCGC 2 cut(s) 95, 1281
Hin1I GRCGYC 1 cut(s) 553
Hin1II CATG 6 cut(s) 333, 347, 385, 440, 693, 1221
Hin6I GCGC 2 cut(s) 93, 1279
HinP1I GCGC 2 cut(s) 93, 1279
HincII GTYRAC 3 cut(s) 445, 661, 1058
HindII GTYRAC 3 cut(s) 445, 661, 1058
HindIII AAGCTT 4 cut(s) 389, 843, 1049, 1354
HinfI GANTC 5 cut(s) 278, 515, 596, 604, 1201
HpaII CCGG 3 cut(s) 318, 524, 801
HphI GGTGA 2 cut(s) 745, 752
Hpy166II GTNNAC 4 cut(s) 445, 661, 948, 1058
Hpy188I TCNGA 6 cut(s) 422, 471, 727, 1033, 1152, 1313
Hpy188III TCNNGA 5 cut(s) 98, 113, 575, 1015, 1245
Hpy8I GTNNAC 4 cut(s) 445, 661, 948, 1058
Hpy99I CGWCG 1 cut(s) 558
HpyAV CCTTC 6 cut(s) 179, 419, 680, 732, 1012, 1112
HpyCH4III ACNGT 4 cut(s) 563, 622, 658, 1147
HpyCH4IV ACGT 2 cut(s) 535, 553
HpyCH4V TGCA 6 cut(s) 266, 305, 695, 875, 1232, 1256
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 1358
HpyF3I CTNAG 8 cut(s) 99, 313, 859, 926, 1047, 1199, 1250, 1357
HpySE526I ACGT 2 cut(s) 535, 553
Hsp92I GRCGYC 1 cut(s) 553
Hsp92II CATG 6 cut(s) 333, 347, 385, 440, 693, 1221
HspAI GCGC 2 cut(s) 93, 1279
Kzo9I GATC 5 cut(s) 163, 337, 527, 648, 760
LguI GCTCTTC 1 cut(s) 1104
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 992, 1348
MaeI CTAG 2 cut(s) 198, 1212
MaeII ACGT 2 cut(s) 535, 553
MaeIII GTNAC 4 cut(s) 478, 563, 616, 751
MalI GATC 5 cut(s) 165, 339, 529, 650, 762
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 5 cut(s) 163, 337, 527, 648, 760
MboII GAAGA 9 cut(s) 89, 134, 137, 486, 605, 613, 896, 1091, 1134
MflI RGATCY 3 cut(s) 163, 337, 648
MhlI GDGCHC 1 cut(s) 1294
MluCI AATT 8 cut(s) 16, 119, 152, 366, 472, 583, 1026, 1039
MlyI GAGTC 2 cut(s) 287, 1210
MnlI CCTC 5 cut(s) 94, 642, 1183, 1247, 1252
Mph1103I ATGCAT 1 cut(s) 877
MseI TTAA 5 cut(s) 248, 287, 705, 773, 1077
MspI CCGG 3 cut(s) 318, 524, 801
MspR9I CCNGG 3 cut(s) 138, 525, 732
Mva1269I GAATGC 2 cut(s) 802, 1333
MvaI CCWGG 2 cut(s) 138, 732
MwoI GCNNNNNNNGC 2 cut(s) 216, 1358
NciI CCSGG 1 cut(s) 525
NdeII GATC 5 cut(s) 163, 337, 527, 648, 760
NlaIII CATG 6 cut(s) 333, 347, 385, 440, 693, 1221
NlaIV GGNNCC 2 cut(s) 354, 1187
NmeAIII GCCGAG 3 cut(s) 397, 520, 934
NmuCI GTSAC 1 cut(s) 751
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 2 cut(s) 347, 693
PasI CCCWGGG 1 cut(s) 731
PciI ACATGT 1 cut(s) 689
PciSI GCTCTTC 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 541
PctI GAATGC 2 cut(s) 802, 1333
PfeI GAWTC 3 cut(s) 515, 596, 604
PkrI GCNGC 2 cut(s) 982, 1363
PleI GAGTC 2 cut(s) 286, 1209
PpsI GAGTC 2 cut(s) 286, 1209
PpuMI RGGWCCY 1 cut(s) 32
PscI ACATGT 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 136, 730
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 2 cut(s) 136, 730
PspN4I GGNNCC 2 cut(s) 354, 1187
PspPI GGNCC 2 cut(s) 32, 209
PspPPI RGGWCCY 1 cut(s) 32
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 3 cut(s) 163, 337, 648
RsaI GTAC 6 cut(s) 254, 466, 688, 716, 1222, 1335
RsaNI GTAC 6 cut(s) 253, 465, 687, 715, 1221, 1334
SapI GCTCTTC 1 cut(s) 1104
SaqAI TTAA 5 cut(s) 248, 287, 705, 773, 1077
SatI GCNGC 2 cut(s) 981, 1362
Sau3AI GATC 5 cut(s) 163, 337, 527, 648, 760
Sau96I GGNCC 2 cut(s) 32, 209
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 2 cut(s) 287, 1210
ScrFI CCNGG 3 cut(s) 138, 525, 732
SduI GDGCHC 1 cut(s) 1294
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 32
Sse9I AATT 8 cut(s) 16, 119, 152, 366, 472, 583, 1026, 1039
SsiI CCGC 4 cut(s) 341, 737, 969, 1183
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 198, 1212
StyD4I CCNGG 3 cut(s) 136, 523, 730
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 4 cut(s) 563, 622, 658, 1147
TaiI ACGT 2 cut(s) 538, 556
TaqI TCGA 4 cut(s) 599, 1016, 1288, 1325
TaqII GACCGA 1 cut(s) 223
TasI AATT 8 cut(s) 16, 119, 152, 366, 472, 583, 1026, 1039
TatI WGTACW 5 cut(s) 252, 686, 714, 1220, 1333
TfiI GAWTC 3 cut(s) 515, 596, 604
Tru1I TTAA 5 cut(s) 248, 287, 705, 773, 1077
Tru9I TTAA 5 cut(s) 248, 287, 705, 773, 1077
TscAI CASTG 2 cut(s) 91, 648
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 2 cut(s) 980, 1361
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 7 cut(s) 41, 425, 576, 949, 1131, 1197, 1311
TspRI CASTG 2 cut(s) 91, 648
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 3 cut(s) 472, 583, 1026
XceI RCATGY 2 cut(s) 347, 693
XmiI GTMKAC 1 cut(s) 947
XspI CTAG 2 cut(s) 198, 1212
ZraI GACGTC 1 cut(s) 554
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.