RchiOBHm_Chr6g0252001

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
7231457 .. 7235350
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22592

Sequence Viewer

Length: 1335 bp
ATGTCACTGCAAGCTCTGAAGAAAATATCTCAGGAACACCCAACTGCCTGTCTACGAGCTGGTGCTCTTATGGCAGTGCTTTCTTATCTGGATTTCTTTTCCACAGTAGTCCAGCGTGTGGCATTATCAACTGCTGCGAATATGTGCAAGAAACTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTCCCATTACTGACAAATCTTCTGCAATATCATGATGCTAAGGTTTTGGAGCATGCTTCTGTATGTCTGACTCGAATTGCTGAATCATTTGCATCATCGCCTGACAAACTTGATGAACTATGCAACCATGGACTAGTTGCTCAACCTGCATCCCTTATTTCTACCAGCAATTCTGGAGGTGGGCATTCATCTCTCAGTACACCTACTTATACGGGCTTAATCCGGCTACTTTCAACCTGCACAAGTGGTTCTCCATTAGGAGCTAAAACTTTGCTTTCTCCAGGGATAACTGGCATTCTCAAAGATGTACTTTCGGGTTCAGGCAGTTCTTCCAACACTACAGTTTCTCCTGCTCTAAGCAGACCAGCAGAACAGATTTTTGAGATTGTCAATCTTGCAAATGAGCTGCTTCCTCCACTTCCACAAGGAACCATCTCCATGCCGTCCAGTTTCAATTTGTTTATGAAAGGACCTATTGTGAAAAAGTCATCTGGTAGCAGTTCTGGGAAGCCCGAAGATACCAGTGGAAGCGCTCCTGAGGTTTCAGCTCGTGAGAAATTATTGAACGAACAGCCTGGTCTTCTTCAGCAATTTGGAATGGATCTCCTTCCTGTGTTTATACAGATTTATGGCTCTAGTGTAAATGGCCCTGTTCGCCACAAATGTCTATCGGTCATCGGGAAGTTAATGTACTTCAGCCCTGCAGAGATGATTGAGTCTTTGTTAAGTATGACAAATATTGCAAGTTTCTTAGCCGGTGTTTTAGCATGGAAAGATCCGCATGTCTTGGTTCCTGCTCTCCAAATTGCCGAGATACTCATGGAGAAGCTTCCCAAGACTTTCTCCAAGGTGTTTGTCAGAGAAGGTGTGGTTCATGCTGTTGACCAACTTATTTTAGCTGGTACTCCGAATTCAGTTACTTCACAAGTCTCTTCTGCTGAAAAGGACAATGATTCTGTGCCGGGATCATCACGTTCTAGGCGTTATAGACGTCGCAACAGTAACTCAAATCCAGATGGAAATTCATTGGAAGAATTGAAGATTCCTGCTTTGGTAACTGTTGGTTCGCCTCCAAGTTCAGTGGAGATCCCAACTGTCAACTCCAGCCTTCGTGTAGCTGTGAGTACATGTGCAAAAGCGTTTTAA

Protein Analysis

444

Amino Acids

46.96

Weight (kDa)

8.1

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1183
Acc36I ACCTGC 2 cut(s) 343, 434
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 968
AclWI GGATC 4 cut(s) 798, 959, 1162, 1270
AcsI RAATTY 2 cut(s) 1099, 1210
AcuI CTGAAG 4 cut(s) 38, 144, 758, 868
AcyI GRCGYC 1 cut(s) 1180
AfaI GTAC 5 cut(s) 388, 498, 881, 1093, 1315
AfeI AGCGCT 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 1316
AgsI TTSAA 4 cut(s) 423, 643, 754, 1228
AhlI ACTAGT 1 cut(s) 322
AjnI CCWGG 2 cut(s) 469, 763
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 1123
AlwI GGATC 4 cut(s) 798, 959, 1162, 1270
Aor51HI AGCGCT 1 cut(s) 721
AoxI GGCC 1 cut(s) 835
ApeKI GCWGC 3 cut(s) 134, 167, 595
ApoI RAATTY 2 cut(s) 1099, 1210
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 2 cut(s) 659, 836
AsuC2I CCSGG 1 cut(s) 1152
AvaII GGWCC 1 cut(s) 659
AxyI CCTNAGG 1 cut(s) 726
BarI GAAGNNNNNNTAC 2 cut(s) 863, 895
BauI CACGAG 1 cut(s) 738
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 121, 179, 582
BccI CCATC 3 cut(s) 175, 629, 1199
BceAI ACGGC 1 cut(s) 616
BciT130I CCWGG 2 cut(s) 471, 765
BcnI CCSGG 1 cut(s) 1152
BcoDI GTCTC 1 cut(s) 1123
BcuI ACTAGT 1 cut(s) 322
BfaI CTAG 3 cut(s) 323, 825, 1167
BfmI CTRYAG 2 cut(s) 528, 891
BfoI RGCGCY 1 cut(s) 723
BfuAI ACCTGC 2 cut(s) 343, 434
BisI GCNGC 3 cut(s) 135, 168, 596
BlsI GCNGC 3 cut(s) 136, 169, 597
Bme1390I CCNGG 3 cut(s) 471, 765, 1152
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 659, 836
BmiI GGNNCC 2 cut(s) 619, 981
BmrFI CCNGG 3 cut(s) 471, 765, 1152
BmsI GCATC 4 cut(s) 154, 214, 290, 347
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 3 cut(s) 384, 453, 1276
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 1152
BsaHI GRCGYC 1 cut(s) 1180
BsaJI CCNNGG 3 cut(s) 316, 470, 1035
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 3 cut(s) 484, 636, 711
Bse21I CCTNAGG 1 cut(s) 726
BseBI CCWGG 2 cut(s) 471, 765
BseDI CCNNGG 3 cut(s) 316, 470, 1035
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 44, 397, 717
BseNI ACTGG 3 cut(s) 484, 636, 711
BseXI GCAGC 3 cut(s) 121, 179, 582
BsgI GTGCAG 1 cut(s) 412
BshFI GGCC 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 412, 945, 1151
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 1123
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 373, 483
BsnI GGCC 1 cut(s) 837
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 4 cut(s) 790, 964, 1154, 1275
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 1 cut(s) 968
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 3 cut(s) 43, 396, 718
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 619, 981
BspMAI CTGCAG 1 cut(s) 895
BspMI ACCTGC 2 cut(s) 343, 434
BspPI GGATC 4 cut(s) 798, 959, 1162, 1270
BsrFI RCCGGY 1 cut(s) 944
BsrI ACTGG 3 cut(s) 484, 636, 711
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 3 cut(s) 316, 470, 1035
BssMI GATC 4 cut(s) 790, 964, 1154, 1275
BssNI GRCGYC 1 cut(s) 1180
BssSI CACGAG 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 316, 1035
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 471, 765
Bst4CI ACNGT 5 cut(s) 106, 532, 1190, 1249, 1285
Bst6I CTCTTC 1 cut(s) 1126
BstACI GRCGYC 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 12, 243
BstDEI CTNAG 6 cut(s) 30, 228, 383, 545, 726, 940
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 4 cut(s) 793, 967, 1157, 1278
BstMAI GTCTC 1 cut(s) 1123
BstMBI GATC 4 cut(s) 790, 964, 1154, 1275
BstMWI GCNNNNNNNGC 3 cut(s) 71, 335, 843
BstNI CCWGG 2 cut(s) 471, 765
BstNSI RCATGY 3 cut(s) 245, 974, 1320
BstSCI CCNGG 3 cut(s) 469, 763, 1150
BstSFI CTRYAG 2 cut(s) 528, 891
BstV1I GCAGC 3 cut(s) 121, 179, 582
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 3 cut(s) 790, 964, 1275
BstYI RGATCY 3 cut(s) 790, 964, 1275
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 338
BtsI GCAGTG 2 cut(s) 5, 81
BtsIMutI CAGTG 4 cut(s) 5, 81, 718, 1275
BveI ACCTGC 2 cut(s) 343, 434
Cac8I GCNNGC 2 cut(s) 12, 243
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 722
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 2 cut(s) 659, 836
Csp6I GTAC 5 cut(s) 387, 497, 880, 1092, 1314
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviAII CATG 9 cut(s) 221, 242, 317, 628, 957, 971, 1009, 1064, 1317
CviQI GTAC 5 cut(s) 387, 497, 880, 1092, 1314
DdeI CTNAG 6 cut(s) 30, 228, 383, 545, 726, 940
DpnI GATC 4 cut(s) 792, 966, 1156, 1277
DpnII GATC 4 cut(s) 790, 964, 1154, 1275
Eam1104I CTCTTC 1 cut(s) 1126
EarI CTCTTC 1 cut(s) 1126
Eco130I CCWWGG 2 cut(s) 316, 1035
Eco47I GGWCC 1 cut(s) 659
Eco47III AGCGCT 1 cut(s) 721
Eco57I CTGAAG 4 cut(s) 38, 144, 758, 868
Eco81I CCTNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 1099
EcoRII CCWGG 2 cut(s) 469, 763
EcoT14I CCWWGG 2 cut(s) 316, 1035
ErhI CCWWGG 2 cut(s) 316, 1035
FaeI CATG 9 cut(s) 224, 245, 320, 631, 960, 974, 1012, 1067, 1320
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 176
FatI CATG 9 cut(s) 220, 241, 316, 627, 956, 970, 1008, 1063, 1316
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 135, 168, 596
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 135, 168, 596
FspBI CTAG 3 cut(s) 323, 825, 1167
GlaI GCGC 1 cut(s) 721
GluI GCNGC 3 cut(s) 135, 168, 596
GsuI CTGGAG 3 cut(s) 384, 453, 1276
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 1 cut(s) 837
HapII CCGG 3 cut(s) 412, 945, 1151
HhaI GCGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 1180
Hin1II CATG 9 cut(s) 224, 245, 320, 631, 960, 974, 1012, 1067, 1320
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 2 cut(s) 1072, 1288
HindII GTYRAC 2 cut(s) 1072, 1288
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 5 cut(s) 259, 272, 905, 1142, 1231
HpaII CCGG 3 cut(s) 412, 945, 1151
Hpy166II GTNNAC 4 cut(s) 53, 389, 1072, 1288
Hpy188I TCNGA 5 cut(s) 18, 163, 258, 1049, 1098
Hpy188III TCNNGA 8 cut(s) 32, 89, 221, 363, 725, 740, 868, 1202
Hpy8I GTNNAC 4 cut(s) 53, 389, 1072, 1288
Hpy99I CGWCG 1 cut(s) 1185
HpyAV CCTTC 4 cut(s) 168, 806, 1046, 1307
HpyCH4III ACNGT 5 cut(s) 106, 532, 1190, 1249, 1285
HpyCH4IV ACGT 2 cut(s) 1162, 1180
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 335, 843
HpyF3I CTNAG 6 cut(s) 30, 228, 383, 545, 726, 940
HpySE526I ACGT 2 cut(s) 1162, 1180
Hsp92I GRCGYC 1 cut(s) 1180
Hsp92II CATG 9 cut(s) 224, 245, 320, 631, 960, 974, 1012, 1067, 1320
HspAI GCGC 1 cut(s) 720
Kzo9I GATC 4 cut(s) 790, 964, 1154, 1275
LmnI GCTCC 3 cut(s) 238, 449, 727
Lsp1109I GCAGC 3 cut(s) 121, 179, 582
LweI GCATC 4 cut(s) 154, 214, 290, 347
MaeI CTAG 3 cut(s) 323, 825, 1167
MaeII ACGT 2 cut(s) 1162, 1180
MaeIII GTNAC 4 cut(s) 3, 1105, 1190, 1243
MalI GATC 4 cut(s) 792, 966, 1156, 1277
MboI GATC 4 cut(s) 790, 964, 1154, 1275
MboII GAAGA 9 cut(s) 31, 200, 510, 716, 761, 764, 1113, 1232, 1240
MflI RGATCY 3 cut(s) 790, 964, 1275
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 9 cut(s) 264, 358, 643, 746, 779, 993, 1099, 1210, 1223
MlyI GAGTC 2 cut(s) 253, 914
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 4 cut(s) 359, 612, 721, 1269
MseI TTAA 4 cut(s) 407, 875, 914, 1333
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 412, 945, 1151
MspR9I CCNGG 3 cut(s) 471, 765, 1152
Mva1269I GAATGC 2 cut(s) 373, 483
MvaI CCWGG 2 cut(s) 471, 765
MwoI GCNNNNNNNGC 3 cut(s) 71, 335, 843
NciI CCSGG 1 cut(s) 1152
NcoI CCATGG 1 cut(s) 316
NdeII GATC 4 cut(s) 790, 964, 1154, 1275
NlaIII CATG 9 cut(s) 224, 245, 320, 631, 960, 974, 1012, 1067, 1320
NlaIV GGNNCC 2 cut(s) 619, 981
NmeAIII GCCGAG 1 cut(s) 1024
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 3 cut(s) 245, 974, 1320
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 1316
PcsI WCGNNNNNNNCGW 1 cut(s) 1168
PctI GAATGC 2 cut(s) 373, 483
PfeI GAWTC 3 cut(s) 272, 1142, 1231
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 3 cut(s) 136, 169, 597
PleI GAGTC 2 cut(s) 253, 913
PpsI GAGTC 2 cut(s) 253, 913
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 1316
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 469, 763
PspGI CCWGG 2 cut(s) 469, 763
PspN4I GGNNCC 2 cut(s) 619, 981
PspPI GGNCC 2 cut(s) 659, 836
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 895
PsuI RGATCY 3 cut(s) 790, 964, 1275
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 5 cut(s) 388, 498, 881, 1093, 1315
RsaNI GTAC 5 cut(s) 387, 497, 880, 1092, 1314
RseI CAYNNNNRTG 1 cut(s) 626
SaqAI TTAA 4 cut(s) 407, 875, 914, 1333
SatI GCNGC 3 cut(s) 135, 168, 596
Sau3AI GATC 4 cut(s) 790, 964, 1154, 1275
Sau96I GGNCC 2 cut(s) 659, 836
SchI GAGTC 2 cut(s) 253, 914
ScrFI CCNGG 3 cut(s) 471, 765, 1152
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 4 cut(s) 154, 214, 290, 347
SfcI CTRYAG 2 cut(s) 528, 891
SinI GGWCC 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 626
SpeI ACTAGT 1 cut(s) 322
SphI GCATGC 1 cut(s) 245
Sse9I AATT 9 cut(s) 264, 358, 643, 746, 779, 993, 1099, 1210, 1223
SsiI CCGC 1 cut(s) 968
SspI AATATT 1 cut(s) 928
SspMI CTAG 3 cut(s) 323, 825, 1167
StyD4I CCNGG 3 cut(s) 469, 763, 1150
StyI CCWWGG 2 cut(s) 316, 1035
TaaI ACNGT 5 cut(s) 106, 532, 1190, 1249, 1285
TaiI ACGT 2 cut(s) 1165, 1183
TaqI TCGA 1 cut(s) 262
TaqII GACCGA 1 cut(s) 850
TasI AATT 9 cut(s) 264, 358, 643, 746, 779, 993, 1099, 1210, 1223
TatI WGTACW 4 cut(s) 386, 496, 879, 1313
TfiI GAWTC 3 cut(s) 272, 1142, 1231
Tru1I TTAA 4 cut(s) 407, 875, 914, 1333
Tru9I TTAA 4 cut(s) 407, 875, 914, 1333
TscAI CASTG 4 cut(s) 12, 81, 718, 1275
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 134, 167, 595
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 318, 366, 668, 1052, 1203
TspRI CASTG 4 cut(s) 12, 81, 718, 1275
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 659
XapI RAATTY 2 cut(s) 1099, 1210
XceI RCATGY 3 cut(s) 245, 974, 1320
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 3 cut(s) 323, 825, 1167
ZraI GACGTC 1 cut(s) 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.