Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002522.1

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Forward (+)

190070 .. 191308

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002522.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgccgtccagtttcaatttgtttatgaaaggacctattgtgaaaaagtcatctggtagtagttctgggaagccagaagataccagtggaagcgctcctgaggtttcagctcgtgagaaattattgaacgaacagcctggtcttcttcagcaatttggaatggatctccttcctgttttaatacagatttatggctctagtgtaaatggccctgttcgccacaaatgtctatcggtcatcgggaagttaatgtacttcagccctgcagagatgattgagtctttgttaagtatgacaaatattgcaagtttcttagccggtgttttagcatggaaagatccgcatgtcttggttcctgctctccaaattgccgagatactcatggagaagcttcccaagactttctccaaggtgtttgtcagagaaggtgtggttcatgctgttgaccaacttattttagctgctactccgaattcagttacttcacaagtctcttctgctgaaaaggacaatgattctgtgccgggatcatcacgttctaggcgttatagacgtcgcaacagtaacccaaatccagatggaaattcattggaagaatcgaagattcctgcttcggtaactgttggttcgcctccaagttcagtggagatcccaactgtcaactccagccttcgtgtagctgtgagtacatgtgcaaaagcgtttaaggacaagtacttcccttcagaccctggggcgggtgaagttggtgtcaccgatgatctattacatttaaaaaatctgtgtgtgaagttgaatgccggtgtagatgacccaaaaacaaaagcaaagggaaaatcaaaagcttctgggtctcgcttagttgatagttatgcaaataaggaagagtatttgattggtgtggtagccgagatggtagccgaactaagcaaaggggatggtgtgtctacctttgagttcgtaggtagcggtgttgtcgcagctttgctgaactatttttcttgtgaccacttctcgaaggagagaatttcagaagctaatttgcctaagcttcgtcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

353

Amino Acids

37.8

Weight (kDa)

8.51

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	947
AciI	CCGC	3 cut(s)	341, 737, 969
AclWI	GGATC	4 cut(s)	171, 332, 535, 643
AcsI	RAATTY	3 cut(s)	472, 583, 1026
AcuI	CTGAAG	3 cut(s)	131, 241, 708
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	3 cut(s)	254, 688, 716
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	736, 737
AflIII	ACRYGT	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	16, 127, 796
AjnI	CCWGG	2 cut(s)	136, 730
AluBI	AGCT	8 cut(s)	110, 391, 461, 680, 845, 983, 1037, 1051
AluI	AGCT	8 cut(s)	110, 391, 461, 680, 845, 983, 1037, 1051
Alw26I	GTCTC	2 cut(s)	496, 858
AlwI	GGATC	4 cut(s)	171, 332, 535, 643
AlwNI	CAGNNNCTG	1 cut(s)	731
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	461, 980
ApoI	RAATTY	3 cut(s)	472, 583, 1026
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	32, 209
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	745, 752
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	448, 992
BccI	CCATC	3 cut(s)	572, 907, 932
BciT130I	CCWGG	2 cut(s)	138, 732
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	496, 858
BfaI	CTAG	2 cut(s)	198, 540
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	2 cut(s)	462, 981
BlsI	GCNGC	2 cut(s)	463, 982
BmcAI	AGTACT	1 cut(s)	716
Bme1390I	CCNGG	3 cut(s)	138, 525, 732
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 209
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	138, 525, 732
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	649
Bpu10I	CCTNAGC	1 cut(s)	1047
BpuMI	CCSGG	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	3 cut(s)	408, 730, 731
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 737
Bse118I	RCCGGY	2 cut(s)	317, 800
Bse1I	ACTGG	2 cut(s)	9, 84
Bse21I	CCTNAGG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	138, 732
BseDI	CCNNGG	3 cut(s)	408, 730, 731
BseGI	GGATG	1 cut(s)	943
BseLI	CCNNNNNNNGG	2 cut(s)	736, 737
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	9, 84
BseXI	GCAGC	2 cut(s)	448, 992
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	318, 524, 801
BslI	CCNNNNNNNGG	2 cut(s)	736, 737
BsmAI	GTCTC	2 cut(s)	496, 858
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	163, 337, 527, 648, 760
BspACI	CCGC	3 cut(s)	341, 737, 969
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	4 cut(s)	171, 332, 535, 643
BspTNI	GGTCTC	1 cut(s)	858
BsrFI	RCCGGY	2 cut(s)	317, 800
BsrI	ACTGG	2 cut(s)	9, 84
BssAI	RCCGGY	2 cut(s)	317, 800
BssECI	CCNNGG	3 cut(s)	408, 730, 731
BssMI	GATC	5 cut(s)	163, 337, 527, 648, 760
BssNI	GRCGYC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	138, 732
Bst4CI	ACNGT	3 cut(s)	563, 622, 658
Bst6I	CTCTTC	2 cut(s)	499, 879
BstACI	GRCGYC	1 cut(s)	553
BstDEI	CTNAG	5 cut(s)	99, 313, 859, 926, 1047
BstF5I	GGATG	1 cut(s)	943
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	5 cut(s)	166, 340, 530, 651, 763
BstMAI	GTCTC	2 cut(s)	496, 858
BstMBI	GATC	5 cut(s)	163, 337, 527, 648, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	138, 732
BstNSI	RCATGY	2 cut(s)	347, 693
BstSCI	CCNGG	3 cut(s)	136, 523, 730
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	448, 992
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	163, 337, 648
BstYI	RGATCY	3 cut(s)	163, 337, 648
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	943
BtsIMutI	CAGTG	2 cut(s)	91, 648
CaiI	CAGNNNCTG	1 cut(s)	731
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	2 cut(s)	317, 800
Cfr13I	GGNCC	2 cut(s)	32, 209
Csp6I	GTAC	3 cut(s)	253, 687, 715
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	5 cut(s)	330, 344, 382, 437, 690
CviQI	GTAC	3 cut(s)	253, 687, 715
DdeI	CTNAG	5 cut(s)	99, 313, 859, 926, 1047
DpnI	GATC	5 cut(s)	165, 339, 529, 650, 762
DpnII	GATC	5 cut(s)	163, 337, 527, 648, 760
DraI	TTTAAA	1 cut(s)	774
Eam1104I	CTCTTC	2 cut(s)	499, 879
EarI	CTCTTC	2 cut(s)	499, 879
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	32
Eco47III	AGCGCT	1 cut(s)	94
Eco57I	CTGAAG	3 cut(s)	131, 241, 708
Eco81I	CCTNAGG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	136, 730
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	5 cut(s)	333, 347, 385, 440, 693
FatI	CATG	5 cut(s)	329, 343, 381, 436, 689
FauI	CCCGC	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	2 cut(s)	462, 981
FokI	GGATG	1 cut(s)	950
Fsp4HI	GCNGC	2 cut(s)	462, 981
FspBI	CTAG	2 cut(s)	198, 540
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	462, 981
GsuI	CTGGAG	1 cut(s)	649
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	3 cut(s)	318, 524, 801
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	333, 347, 385, 440, 693
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	2 cut(s)	445, 661
HindII	GTYRAC	2 cut(s)	445, 661
HindIII	AAGCTT	3 cut(s)	389, 843, 1049
HinfI	GANTC	4 cut(s)	278, 515, 596, 604
HpaII	CCGG	3 cut(s)	318, 524, 801
HphI	GGTGA	2 cut(s)	745, 752
Hpy166II	GTNNAC	3 cut(s)	445, 661, 948
Hpy188I	TCNGA	4 cut(s)	422, 471, 727, 1033
Hpy188III	TCNNGA	5 cut(s)	98, 113, 241, 575, 1015
Hpy8I	GTNNAC	3 cut(s)	445, 661, 948
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	5 cut(s)	179, 419, 680, 732, 1012
HpyCH4III	ACNGT	3 cut(s)	563, 622, 658
HpyCH4IV	ACGT	2 cut(s)	535, 553
HpyCH4V	TGCA	4 cut(s)	266, 305, 695, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	5 cut(s)	99, 313, 859, 926, 1047
HpySE526I	ACGT	2 cut(s)	535, 553
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	5 cut(s)	333, 347, 385, 440, 693
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	163, 337, 527, 648, 760
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	448, 992
MaeI	CTAG	2 cut(s)	198, 540
MaeII	ACGT	2 cut(s)	535, 553
MaeIII	GTNAC	5 cut(s)	478, 563, 616, 751, 1004
MalI	GATC	5 cut(s)	165, 339, 529, 650, 762
MboI	GATC	5 cut(s)	163, 337, 527, 648, 760
MboII	GAAGA	7 cut(s)	89, 134, 137, 486, 605, 613, 896
MflI	RGATCY	3 cut(s)	163, 337, 648
MluCI	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 1026, 1039
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	94, 642
MseI	TTAA	5 cut(s)	179, 248, 287, 705, 773
MspI	CCGG	3 cut(s)	318, 524, 801
MspR9I	CCNGG	3 cut(s)	138, 525, 732
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	2 cut(s)	138, 732
MwoI	GCNNNNNNNGC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	5 cut(s)	163, 337, 527, 648, 760
NlaIII	CATG	5 cut(s)	333, 347, 385, 440, 693
NlaIV	GGNNCC	1 cut(s)	354
NmeAIII	GCCGAG	2 cut(s)	397, 934
NmuCI	GTSAC	2 cut(s)	751, 1004
NspI	RCATGY	2 cut(s)	347, 693
PasI	CCCWGGG	1 cut(s)	731
PciI	ACATGT	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	3 cut(s)	515, 596, 604
PkrI	GCNGC	2 cut(s)	463, 982
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	32
PscI	ACATGT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	136, 730
PspGI	CCWGG	2 cut(s)	136, 730
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	32, 209
PspPPI	RGGWCCY	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	3 cut(s)	163, 337, 648
RsaI	GTAC	3 cut(s)	254, 688, 716
RsaNI	GTAC	3 cut(s)	253, 687, 715
SaqAI	TTAA	5 cut(s)	179, 248, 287, 705, 773
SatI	GCNGC	2 cut(s)	462, 981
Sau3AI	GATC	5 cut(s)	163, 337, 527, 648, 760
Sau96I	GGNCC	2 cut(s)	32, 209
ScaI	AGTACT	1 cut(s)	716
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	138, 525, 732
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 1026, 1039
SsiI	CCGC	3 cut(s)	341, 737, 969
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	198, 540
StyD4I	CCNGG	3 cut(s)	136, 523, 730
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	563, 622, 658
TaiI	ACGT	2 cut(s)	538, 556
TaqI	TCGA	2 cut(s)	599, 1016
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	8 cut(s)	16, 119, 152, 366, 472, 583, 1026, 1039
TatI	WGTACW	3 cut(s)	252, 686, 714
TfiI	GAWTC	3 cut(s)	515, 596, 604
Tru1I	TTAA	5 cut(s)	179, 248, 287, 705, 773
Tru9I	TTAA	5 cut(s)	179, 248, 287, 705, 773
TscAI	CASTG	2 cut(s)	91, 648
TseFI	GTSAC	2 cut(s)	751, 1004
TseI	GCWGC	2 cut(s)	461, 980
Tsp45I	GTSAC	2 cut(s)	751, 1004
TspDTI	ATGAA	3 cut(s)	41, 425, 576
TspRI	CASTG	2 cut(s)	91, 648
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	3 cut(s)	472, 583, 1026
XceI	RCATGY	2 cut(s)	347, 693
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	2 cut(s)	198, 540
ZraI	GACGTC	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.