E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4899 |
| AarI | CACCTGC | 1 cut(s) | 640 |
| AatII | GACGTC | 1 cut(s) | 2098 |
| Acc16I | TGCGCA | 1 cut(s) | 1345 |
| Acc36I | ACCTGC | 3 cut(s) | 555, 640, 1349 |
| AccB1I | GGYRCC | 1 cut(s) | 530 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1033 |
| AccBSI | CCGCTC | 3 cut(s) | 594, 2725, 5231 |
| AccI | GTMKAC | 3 cut(s) | 967, 2489, 3026 |
| AccII | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| AcoI | YGGCCR | 5 cut(s) | 210, 256, 909, 4912, 5305 |
| AcsI | RAATTY | 9 cut(s) | 271, 481, 2014, 2125, 2568, 2931, 2977, 4202, 4654 |
| AcuI | CTGAAG | 9 cut(s) | 491, 623, 953, 1673, 1783, 2250, 2595, 4376, 5553 |
| AcyI | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| AfeI | AGCGCT | 2 cut(s) | 92, 1636 |
| AflIII | ACRYGT | 2 cut(s) | 2231, 5115 |
| AhlI | ACTAGT | 1 cut(s) | 1237 |
| AjiI | CACGTC | 1 cut(s) | 3427 |
| AjnI | CCWGG | 7 cut(s) | 399, 1678, 2272, 3366, 4760, 5098, 5476 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 447, 479 |
| Alw21I | GWGCWC | 8 cut(s) | 309, 802, 982, 2776, 2836, 3131, 3137, 5464 |
| Alw44I | GTGCAC | 2 cut(s) | 2772, 5460 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 922, 2273, 3008, 3542 |
| Ama87I | CYCGRG | 1 cut(s) | 156 |
| Aor51HI | AGCGCT | 2 cut(s) | 92, 1636 |
| ApaLI | GTGCAC | 2 cut(s) | 2772, 5460 |
| ApoI | RAATTY | 9 cut(s) | 271, 481, 2014, 2125, 2568, 2931, 2977, 4202, 4654 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2916, 2944, 5524 |
| AspA2I | CCTAGG | 1 cut(s) | 5465 |
| AspLEI | GCGC | 9 cut(s) | 93, 255, 533, 839, 1032, 1346, 1637, 4381, 5612 |
| AspS9I | GGNCC | 6 cut(s) | 159, 168, 1574, 1751, 3191, 4583 |
| AsuC2I | CCSGG | 2 cut(s) | 2067, 5127 |
| AvaI | CYCGRG | 1 cut(s) | 156 |
| AvaII | GGWCC | 2 cut(s) | 1574, 4583 |
| AvrII | CCTAGG | 1 cut(s) | 5465 |
| AxyI | CCTNAGG | 1 cut(s) | 1641 |
| BaeGI | GKGCMC | 4 cut(s) | 505, 2776, 4574, 5464 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3444, 3477 |
| BalI | TGGCCA | 1 cut(s) | 4914 |
| BamHI | GGATCC | 1 cut(s) | 5693 |
| BanI | GGYRCC | 1 cut(s) | 530 |
| BanII | GRGCYC | 3 cut(s) | 572, 3137, 5381 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1778, 1810 |
| BauI | CACGAG | 4 cut(s) | 308, 1653, 3130, 4374 |
| BbsI | GAAGAC | 5 cut(s) | 1676, 4268, 4345, 4382, 4970 |
| Bbv12I | GWGCWC | 8 cut(s) | 309, 802, 982, 2776, 2836, 3131, 3137, 5464 |
| BbvCI | CCTCAGC | 2 cut(s) | 3447, 4140 |
| BceAI | ACGGC | 5 cut(s) | 182, 433, 1531, 1750, 5292 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3713, 3747 |
| BciT130I | CCWGG | 7 cut(s) | 401, 1680, 2274, 3368, 4762, 5100, 5478 |
| BciVI | GTATCC | 2 cut(s) | 3445, 5357 |
| BclI | TGATCA | 3 cut(s) | 4696, 5341, 5356 |
| BcnI | CCSGG | 2 cut(s) | 2067, 5127 |
| BcuI | ACTAGT | 1 cut(s) | 1237 |
| BfmI | CTRYAG | 7 cut(s) | 840, 1443, 1806, 3000, 3459, 3522, 3600 |
| BfoI | RGCGCY | 3 cut(s) | 94, 534, 1638 |
| BfuAI | ACCTGC | 3 cut(s) | 555, 640, 1349 |
| BfuI | GTATCC | 2 cut(s) | 3445, 5357 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 167 |
| BlnI | CCTAGG | 1 cut(s) | 5465 |
| BlpI | GCTNAGC | 1 cut(s) | 2899 |
| BmcAI | AGTACT | 3 cut(s) | 712, 2258, 4077 |
| Bme1390I | CCNGG | 9 cut(s) | 401, 1680, 2067, 2274, 3368, 4762, 5100, 5127, 5478 |
| Bme18I | GGWCC | 2 cut(s) | 1574, 4583 |
| BmeT110I | CYCGRG | 1 cut(s) | 156 |
| BmgBI | CACGTC | 1 cut(s) | 3427 |
| BmgT120I | GGNCC | 6 cut(s) | 159, 168, 1574, 1751, 3191, 4583 |
| BmiI | GGNNCC | 9 cut(s) | 14, 398, 532, 1534, 1896, 2729, 3111, 4584, 5695 |
| BmrFI | CCNGG | 9 cut(s) | 401, 1680, 2067, 2274, 3368, 4762, 5100, 5127, 5478 |
| BmrI | ACTGGG | 2 cut(s) | 4584, 5571 |
| BmuI | ACTGGG | 2 cut(s) | 4584, 5571 |
| BpiI | GAAGAC | 5 cut(s) | 1676, 4268, 4345, 4382, 4970 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 20, 52, 1145, 1177, 3676, 3708 |
| BpmI | CTGGAG | 3 cut(s) | 1299, 2191, 4100 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1143, 3447, 4140, 5424 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2899 |
| BpuEI | CTTGAG | 4 cut(s) | 2594, 4189, 4613, 5420 |
| BpuMI | CCSGG | 2 cut(s) | 2067, 5127 |
| Bsa29I | ATCGAT | 1 cut(s) | 3312 |
| BsaAI | YACGTR | 1 cut(s) | 5116 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5586 |
| BsaHI | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| BsaI | GGTCTC | 2 cut(s) | 2400, 3645 |
| BsaJI | CCNNGG | 9 cut(s) | 400, 1231, 2272, 2273, 3631, 4760, 5465, 5476, 5643 |
| BsaWI | WCCGGW | 2 cut(s) | 4485, 4821 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1435, 1465 |
| Bse118I | RCCGGY | 1 cut(s) | 1859 |
| Bse21I | CCTNAGG | 1 cut(s) | 1641 |
| Bse3DI | GCAATG | 2 cut(s) | 3591, 3612 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5586 |
| BseBI | CCWGG | 7 cut(s) | 401, 1680, 2274, 3368, 4762, 5100, 5478 |
| BseCI | ATCGAT | 1 cut(s) | 3312 |
| BseDI | CCNNGG | 9 cut(s) | 400, 1231, 2272, 2273, 3631, 4760, 5465, 5476, 5643 |
| BseJI | GATNNNNATC | 1 cut(s) | 5586 |
| BseMI | GCAATG | 2 cut(s) | 3591, 3612 |
| BseRI | GAGGAG | 4 cut(s) | 94, 97, 2773, 4728 |
| BseSI | GKGCMC | 4 cut(s) | 505, 2776, 4574, 5464 |
| BseX3I | CGGCCG | 1 cut(s) | 256 |
| BseYI | CCCAGC | 2 cut(s) | 2805, 3611 |
| BsgI | GTGCAG | 1 cut(s) | 4285 |
| Bsh1236I | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| Bsh1285I | CGRYCG | 1 cut(s) | 259 |
| BshNI | GGYRCC | 1 cut(s) | 530 |
| BshVI | ATCGAT | 1 cut(s) | 3312 |
| BsiEI | CGRYCG | 1 cut(s) | 259 |
| BsiHKAI | GWGCWC | 8 cut(s) | 309, 802, 982, 2776, 2836, 3131, 3137, 5464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 156 |
| BslFI | GGGAC | 4 cut(s) | 1091, 3278, 4743, 5572 |
| BsmBI | CGTCTC | 2 cut(s) | 104, 5318 |
| BsmFI | GGGAC | 4 cut(s) | 1091, 3278, 4743, 5572 |
| BsmI | GAATGC | 3 cut(s) | 1398, 2344, 5524 |
| Bso31I | GGTCTC | 2 cut(s) | 2400, 3645 |
| BsoBI | CYCGRG | 1 cut(s) | 156 |
| Bsp1407I | TGTACA | 1 cut(s) | 5655 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2899 |
| Bsp19I | CCATGG | 1 cut(s) | 1231 |
| Bsp68I | TCGCGA | 1 cut(s) | 5031 |
| BspDI | ATCGAT | 1 cut(s) | 3312 |
| BspFNI | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| BspHI | TCATGA | 4 cut(s) | 760, 1135, 4615, 5708 |
| BspLI | GGNNCC | 9 cut(s) | 14, 398, 532, 1534, 1896, 2729, 3111, 4584, 5695 |
| BspMAI | CTGCAG | 4 cut(s) | 844, 1810, 3526, 3604 |
| BspMI | ACCTGC | 3 cut(s) | 555, 640, 1349 |
| BspQI | GCTCTTC | 5 cut(s) | 2646, 3119, 3214, 4857, 5369 |
| BspT107I | GGYRCC | 1 cut(s) | 530 |
| BspTNI | GGTCTC | 2 cut(s) | 2400, 3645 |
| BsrBI | CCGCTC | 3 cut(s) | 594, 2725, 5231 |
| BsrDI | GCAATG | 2 cut(s) | 3591, 3612 |
| BsrFI | RCCGGY | 1 cut(s) | 1859 |
| BsrGI | TGTACA | 1 cut(s) | 5655 |
| BssAI | RCCGGY | 1 cut(s) | 1859 |
| BssECI | CCNNGG | 9 cut(s) | 400, 1231, 2272, 2273, 3631, 4760, 5465, 5476, 5643 |
| BssNI | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| BssSI | CACGAG | 4 cut(s) | 308, 1653, 3130, 4374 |
| BssT1I | CCWWGG | 3 cut(s) | 1231, 5465, 5643 |
| Bst2BI | CACGAG | 4 cut(s) | 308, 1653, 3130, 4374 |
| Bst2UI | CCWGG | 7 cut(s) | 401, 1680, 2274, 3368, 4762, 5100, 5478 |
| BstACI | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5543 |
| BstAUI | TGTACA | 1 cut(s) | 5655 |
| BstBAI | YACGTR | 1 cut(s) | 5116 |
| BstDSI | CCRYGG | 2 cut(s) | 1231, 3631 |
| BstEII | GGTNACC | 2 cut(s) | 2158, 4790 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3868 |
| BstFNI | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| BstH2I | RGCGCY | 3 cut(s) | 94, 534, 1638 |
| BstHHI | GCGC | 9 cut(s) | 93, 255, 533, 839, 1032, 1346, 1637, 4381, 5612 |
| BstMCI | CGRYCG | 1 cut(s) | 259 |
| BstNI | CCWGG | 7 cut(s) | 401, 1680, 2274, 3368, 4762, 5100, 5478 |
| BstNSI | RCATGY | 5 cut(s) | 1160, 1889, 2235, 4311, 5610 |
| BstPI | GGTNACC | 2 cut(s) | 2158, 4790 |
| BstSCI | CCNGG | 9 cut(s) | 399, 1678, 2065, 2272, 3366, 4760, 5098, 5125, 5476 |
| BstSFI | CTRYAG | 7 cut(s) | 840, 1443, 1806, 3000, 3459, 3522, 3600 |
| BstSLI | GKGCMC | 4 cut(s) | 505, 2776, 4574, 5464 |
| BstUI | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| BstV2I | GAAGAC | 5 cut(s) | 1676, 4268, 4345, 4382, 4970 |
| BstX2I | RGATCY | 5 cut(s) | 1705, 1879, 2190, 3503, 5693 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BstYI | RGATCY | 5 cut(s) | 1705, 1879, 2190, 3503, 5693 |
| BstZI | CGGCCG | 1 cut(s) | 256 |
| Bsu15I | ATCGAT | 1 cut(s) | 3312 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1641 |
| BsuI | GTATCC | 2 cut(s) | 3445, 5357 |
| BsuTUI | ATCGAT | 1 cut(s) | 3312 |
| BtgI | CCRYGG | 2 cut(s) | 1231, 3631 |
| BtgZI | GCGATG | 5 cut(s) | 236, 578, 1185, 3108, 5046 |
| BtrI | CACGTC | 1 cut(s) | 3427 |
| BtsI | GCAGTG | 6 cut(s) | 920, 996, 3814, 4273, 5367, 5496 |
| BtuMI | TCGCGA | 1 cut(s) | 5031 |
| BveI | ACCTGC | 3 cut(s) | 555, 640, 1349 |
| CaiI | CAGNNNCTG | 4 cut(s) | 922, 2273, 3008, 3542 |
| CciI | TCATGA | 4 cut(s) | 760, 1135, 4615, 5708 |
| CciNI | GCGGCCGC | 1 cut(s) | 256 |
| CfoI | GCGC | 9 cut(s) | 93, 255, 533, 839, 1032, 1346, 1637, 4381, 5612 |
| Cfr10I | RCCGGY | 1 cut(s) | 1859 |
| Cfr13I | GGNCC | 6 cut(s) | 159, 168, 1574, 1751, 3191, 4583 |
| Cfr42I | CCGCGG | 1 cut(s) | 3634 |
| ClaI | ATCGAT | 1 cut(s) | 3312 |
| CseI | GACGC | 3 cut(s) | 673, 2810, 3672 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2166, 2201, 5268, 5303 |
| DinI | GGCGCC | 1 cut(s) | 532 |
| DraI | TTTAAA | 1 cut(s) | 2316 |
| EaeI | YGGCCR | 5 cut(s) | 210, 256, 909, 4912, 5305 |
| EagI | CGGCCG | 1 cut(s) | 256 |
| EciI | GGCGGA | 2 cut(s) | 41, 435 |
| Ecl136II | GAGCTC | 1 cut(s) | 3135 |
| EclXI | CGGCCG | 1 cut(s) | 256 |
| Eco130I | CCWWGG | 3 cut(s) | 1231, 5465, 5643 |
| Eco24I | GRGCYC | 3 cut(s) | 572, 3137, 5381 |
| Eco31I | GGTCTC | 2 cut(s) | 2400, 3645 |
| Eco32I | GATATC | 2 cut(s) | 3343, 5146 |
| Eco47I | GGWCC | 2 cut(s) | 1574, 4583 |
| Eco47III | AGCGCT | 2 cut(s) | 92, 1636 |
| Eco52I | CGGCCG | 1 cut(s) | 256 |
| Eco53kI | GAGCTC | 1 cut(s) | 3135 |
| Eco57I | CTGAAG | 9 cut(s) | 491, 623, 953, 1673, 1783, 2250, 2595, 4376, 5553 |
| Eco81I | CCTNAGG | 1 cut(s) | 1641 |
| Eco88I | CYCGRG | 1 cut(s) | 156 |
| Eco91I | GGTNACC | 2 cut(s) | 2158, 4790 |
| EcoICRI | GAGCTC | 1 cut(s) | 3135 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3868 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1574, 3191, 4583 |
| EcoO65I | GGTNACC | 2 cut(s) | 2158, 4790 |
| EcoRI | GAATTC | 3 cut(s) | 271, 2014, 2931 |
| EcoRII | CCWGG | 7 cut(s) | 399, 1678, 2272, 3366, 4760, 5098, 5476 |
| EcoRV | GATATC | 2 cut(s) | 3343, 5146 |
| EcoT14I | CCWWGG | 3 cut(s) | 1231, 5465, 5643 |
| EcoT22I | ATGCAT | 1 cut(s) | 3322 |
| EcoT38I | GRGCYC | 3 cut(s) | 572, 3137, 5381 |
| EgeI | GGCGCC | 1 cut(s) | 532 |
| EheI | GGCGCC | 1 cut(s) | 532 |
| ErhI | CCWWGG | 3 cut(s) | 1231, 5465, 5643 |
| Esp3I | CGTCTC | 2 cut(s) | 104, 5318 |
| FaqI | GGGAC | 4 cut(s) | 1091, 3278, 4743, 5572 |
| FauI | CCCGC | 3 cut(s) | 15, 2272, 5224 |
| FbaI | TGATCA | 3 cut(s) | 4696, 5341, 5356 |
| FblI | GTMKAC | 3 cut(s) | 967, 2489, 3026 |
| FriOI | GRGCYC | 3 cut(s) | 572, 3137, 5381 |
| FspI | TGCGCA | 1 cut(s) | 1345 |
| GlaI | GCGC | 9 cut(s) | 92, 254, 532, 838, 1031, 1345, 1636, 4380, 5611 |
| GsaI | CCCAGC | 2 cut(s) | 2809, 3615 |
| GsuI | CTGGAG | 3 cut(s) | 1299, 2191, 4100 |
| HaeII | RGCGCY | 3 cut(s) | 94, 534, 1638 |
| HgaI | GACGC | 3 cut(s) | 673, 2810, 3672 |
| HhaI | GCGC | 9 cut(s) | 93, 255, 533, 839, 1032, 1346, 1637, 4381, 5612 |
| Hin1I | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| Hin6I | GCGC | 9 cut(s) | 91, 253, 531, 837, 1030, 1344, 1635, 4379, 5610 |
| HinP1I | GCGC | 9 cut(s) | 91, 253, 531, 837, 1030, 1344, 1635, 4379, 5610 |
| HincII | GTYRAC | 8 cut(s) | 130, 888, 1987, 2203, 2600, 3702, 4299, 4723 |
| HindII | GTYRAC | 8 cut(s) | 130, 888, 1987, 2203, 2600, 3702, 4299, 4723 |
| HindIII | AAGCTT | 5 cut(s) | 1931, 2385, 2591, 2896, 5624 |
| HpaI | GTTAAC | 1 cut(s) | 130 |
| Hpy99I | CGWCG | 4 cut(s) | 440, 2100, 3057, 3931 |
| HpyCH4IV | ACGT | 5 cut(s) | 2077, 2095, 3426, 4459, 5115 |
| HpySE526I | ACGT | 5 cut(s) | 2077, 2095, 3426, 4459, 5115 |
| Hsp92I | GRCGYC | 3 cut(s) | 531, 2095, 3664 |
| HspAI | GCGC | 9 cut(s) | 91, 253, 531, 837, 1030, 1344, 1635, 4379, 5610 |
| KasI | GGCGCC | 1 cut(s) | 530 |
| Ksp22I | TGATCA | 3 cut(s) | 4696, 5341, 5356 |
| KspAI | GTTAAC | 1 cut(s) | 130 |
| KspI | CCGCGG | 1 cut(s) | 3634 |
| LguI | GCTCTTC | 5 cut(s) | 2646, 3119, 3214, 4857, 5369 |
| LmnI | GCTCC | 7 cut(s) | 12, 304, 1153, 1364, 1642, 3005, 4741 |
| MaeII | ACGT | 5 cut(s) | 2077, 2095, 3426, 4459, 5115 |
| MbiI | CCGCTC | 3 cut(s) | 594, 2725, 5231 |
| MfeI | CAATTG | 1 cut(s) | 5067 |
| MflI | RGATCY | 5 cut(s) | 1705, 1879, 2190, 3503, 5693 |
| MlsI | TGGCCA | 1 cut(s) | 4914 |
| MluNI | TGGCCA | 1 cut(s) | 4914 |
| Mly113I | GGCGCC | 1 cut(s) | 531 |
| MmeI | TCCRAC | 5 cut(s) | 357, 1461, 3756, 3883, 4426 |
| Mox20I | TGGCCA | 1 cut(s) | 4914 |
| Mph1103I | ATGCAT | 1 cut(s) | 3322 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2916, 2944, 5524 |
| MscI | TGGCCA | 1 cut(s) | 4914 |
| MslI | CAYNNNNRTG | 4 cut(s) | 221, 813, 855, 1541 |
| Msp20I | TGGCCA | 1 cut(s) | 4914 |
| MspA1I | CMGCKG | 5 cut(s) | 670, 1085, 3633, 3727, 4502 |
| MspR9I | CCNGG | 9 cut(s) | 401, 1680, 2067, 2274, 3368, 4762, 5100, 5127, 5478 |
| MunI | CAATTG | 1 cut(s) | 5067 |
| Mva1269I | GAATGC | 3 cut(s) | 1398, 2344, 5524 |
| MvaI | CCWGG | 7 cut(s) | 401, 1680, 2274, 3368, 4762, 5100, 5478 |
| MvnI | CGCG | 6 cut(s) | 221, 253, 255, 1032, 3633, 5031 |
| NarI | GGCGCC | 1 cut(s) | 531 |
| NciI | CCSGG | 2 cut(s) | 2067, 5127 |
| NcoI | CCATGG | 1 cut(s) | 1231 |
| NlaIV | GGNNCC | 9 cut(s) | 14, 398, 532, 1534, 1896, 2729, 3111, 4584, 5695 |
| NmeAIII | GCCGAG | 4 cut(s) | 1939, 2476, 3422, 4978 |
| NmuCI | GTSAC | 7 cut(s) | 431, 918, 2293, 2549, 3476, 3987, 5021 |
| NotI | GCGGCCGC | 1 cut(s) | 256 |
| NruI | TCGCGA | 1 cut(s) | 5031 |
| NsbI | TGCGCA | 1 cut(s) | 1345 |
| NsiI | ATGCAT | 1 cut(s) | 3322 |
| NspI | RCATGY | 5 cut(s) | 1160, 1889, 2235, 4311, 5610 |
| PaeI | GCATGC | 2 cut(s) | 1160, 4311 |
| PagI | TCATGA | 4 cut(s) | 760, 1135, 4615, 5708 |
| PaqCI | CACCTGC | 1 cut(s) | 640 |
| PasI | CCCWGGG | 1 cut(s) | 2273 |
| PciI | ACATGT | 1 cut(s) | 2231 |
| PciSI | GCTCTTC | 5 cut(s) | 2646, 3119, 3214, 4857, 5369 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 76, 2083, 2935, 3926 |
| PctI | GAATGC | 3 cut(s) | 1398, 2344, 5524 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2916, 2944, 5524 |
| PflFI | GACNNNGTC | 1 cut(s) | 4727 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1033 |
| PluTI | GGCGCC | 1 cut(s) | 534 |
| Ppu21I | YACGTR | 1 cut(s) | 5116 |
| PpuMI | RGGWCCY | 2 cut(s) | 1574, 4583 |
| PscI | ACATGT | 1 cut(s) | 2231 |
| PsiI | TTATAA | 1 cut(s) | 4899 |
| Psp124BI | GAGCTC | 1 cut(s) | 3137 |
| Psp5II | RGGWCCY | 2 cut(s) | 1574, 4583 |
| Psp6I | CCWGG | 7 cut(s) | 399, 1678, 2272, 3366, 4760, 5098, 5476 |
| PspEI | GGTNACC | 2 cut(s) | 2158, 4790 |
| PspFI | CCCAGC | 2 cut(s) | 2805, 3611 |
| PspGI | CCWGG | 7 cut(s) | 399, 1678, 2272, 3366, 4760, 5098, 5476 |
| PspN4I | GGNNCC | 9 cut(s) | 14, 398, 532, 1534, 1896, 2729, 3111, 4584, 5695 |
| PspPI | GGNCC | 6 cut(s) | 159, 168, 1574, 1751, 3191, 4583 |
| PspPPI | RGGWCCY | 2 cut(s) | 1574, 4583 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4165, 4197 |
| PstI | CTGCAG | 4 cut(s) | 844, 1810, 3526, 3604 |
| PstNI | CAGNNNCTG | 4 cut(s) | 922, 2273, 3008, 3542 |
| PsuI | RGATCY | 5 cut(s) | 1705, 1879, 2190, 3503, 5693 |
| PsyI | GACNNNGTC | 1 cut(s) | 4727 |
| PvuII | CAGCTG | 3 cut(s) | 670, 1085, 3727 |
| RruI | TCGCGA | 1 cut(s) | 5031 |
| RseI | CAYNNNNRTG | 4 cut(s) | 221, 813, 855, 1541 |
| SacI | GAGCTC | 1 cut(s) | 3137 |
| SacII | CCGCGG | 1 cut(s) | 3634 |
| SapI | GCTCTTC | 5 cut(s) | 2646, 3119, 3214, 4857, 5369 |
| Sau96I | GGNCC | 6 cut(s) | 159, 168, 1574, 1751, 3191, 4583 |
| ScaI | AGTACT | 3 cut(s) | 712, 2258, 4077 |
| ScrFI | CCNGG | 9 cut(s) | 401, 1680, 2067, 2274, 3368, 4762, 5100, 5127, 5478 |
| SfcI | CTRYAG | 7 cut(s) | 840, 1443, 1806, 3000, 3459, 3522, 3600 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 167 |
| SfoI | GGCGCC | 1 cut(s) | 532 |
| Sfr303I | CCGCGG | 1 cut(s) | 3634 |
| SgrBI | CCGCGG | 1 cut(s) | 3634 |
| SinI | GGWCC | 2 cut(s) | 1574, 4583 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 221, 813, 855, 1541 |
| SmlI | CTYRAG | 4 cut(s) | 2609, 4168, 4592, 5399 |
| SmoI | CTYRAG | 4 cut(s) | 2609, 4168, 4592, 5399 |
| SpeI | ACTAGT | 1 cut(s) | 1237 |
| SphI | GCATGC | 2 cut(s) | 1160, 4311 |
| SspDI | GGCGCC | 1 cut(s) | 530 |
| SspI | AATATT | 3 cut(s) | 1843, 4556, 5271 |
| SstI | GAGCTC | 1 cut(s) | 3137 |
| StyD4I | CCNGG | 9 cut(s) | 399, 1678, 2065, 2272, 3366, 4760, 5098, 5125, 5476 |
| StyI | CCWWGG | 3 cut(s) | 1231, 5465, 5643 |
| TaiI | ACGT | 5 cut(s) | 2080, 2098, 3429, 4462, 5118 |
| TaqII | GACCGA | 2 cut(s) | 1765, 3669 |
| TauI | GCSGC | 6 cut(s) | 191, 258, 261, 264, 3633, 5212 |
| TseFI | GTSAC | 7 cut(s) | 431, 918, 2293, 2549, 3476, 3987, 5021 |
| Tsp45I | GTSAC | 7 cut(s) | 431, 918, 2293, 2549, 3476, 3987, 5021 |
| TspGWI | ACGGA | 5 cut(s) | 404, 1062, 3915, 4460, 5342 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4727 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1033 |
| VneI | GTGCAC | 2 cut(s) | 2772, 5460 |
| VpaK11BI | GGWCC | 2 cut(s) | 1574, 4583 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3868 |
| XapI | RAATTY | 9 cut(s) | 271, 481, 2014, 2125, 2568, 2931, 2977, 4202, 4654 |
| XbaI | TCTAGA | 1 cut(s) | 5008 |
| XceI | RCATGY | 5 cut(s) | 1160, 1889, 2235, 4311, 5610 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 220, 898, 4739, 5453 |
| XmaJI | CCTAGG | 1 cut(s) | 5465 |
| XmiI | GTMKAC | 3 cut(s) | 967, 2489, 3026 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2916, 2944, 5524 |
| ZraI | GACGTC | 1 cut(s) | 2096 |
| ZrmI | AGTACT | 3 cut(s) | 712, 2258, 4077 |
| Zsp2I | ATGCAT | 1 cut(s) | 3322 |