E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38600 AT4G38600 AT4G38600 |
| fragaria_vesca | FvH4_2g01290 |
| malus_domestica | MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1 |
| prunus_persica | Prupe.8G164700_v2.0.a1 |
| pyrus_communis | pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620 |
| rosa_chinensis | RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001 |
| rosa_laevigata | RLG00000015410 RLG00000015417 |
| rosa_multiflora | Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016 |
| rosa_roxburghii | Rroxscaffold_7G00216270 |
| rosa_rugosa | Rorug05G0505300.1 |
| rosa_samantha | Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700 |
| rosa_wichuraiana | Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4797 |
| AarI | CACCTGC | 1 cut(s) | 634 |
| AatII | GACGTC | 1 cut(s) | 2092 |
| Acc16I | TGCGCA | 1 cut(s) | 1339 |
| Acc36I | ACCTGC | 3 cut(s) | 549, 634, 1343 |
| AccB1I | GGYRCC | 1 cut(s) | 524 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1027 |
| AccBSI | CCGCTC | 3 cut(s) | 588, 2719, 5129 |
| AccI | GTMKAC | 3 cut(s) | 961, 2483, 3020 |
| AccII | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| AclI | AACGTT | 1 cut(s) | 2157 |
| AcoI | YGGCCR | 5 cut(s) | 210, 256, 903, 4810, 5203 |
| AcuI | CTGAAG | 9 cut(s) | 485, 617, 947, 1053, 1667, 1777, 2244, 4274, 5451 |
| AcyI | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| AfeI | AGCGCT | 2 cut(s) | 92, 1630 |
| AflIII | ACRYGT | 2 cut(s) | 2225, 5013 |
| AhlI | ACTAGT | 1 cut(s) | 1231 |
| AjnI | CCWGG | 6 cut(s) | 393, 1672, 2266, 4658, 4996, 5374 |
| Alw21I | GWGCWC | 8 cut(s) | 309, 796, 976, 2770, 2830, 3125, 3131, 5362 |
| Alw44I | GTGCAC | 2 cut(s) | 2766, 5358 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 916, 2267, 3002, 3440 |
| Ama87I | CYCGRG | 1 cut(s) | 156 |
| Aor51HI | AGCGCT | 2 cut(s) | 92, 1630 |
| ApaLI | GTGCAC | 2 cut(s) | 2766, 5358 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 441, 473 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2910, 2938, 5422 |
| AspA2I | CCTAGG | 1 cut(s) | 5363 |
| AspLEI | GCGC | 8 cut(s) | 46, 93, 255, 527, 1340, 1631, 4279, 5510 |
| AspS9I | GGNCC | 7 cut(s) | 159, 168, 1568, 1745, 3185, 4481, 5462 |
| AsuC2I | CCSGG | 2 cut(s) | 2061, 5025 |
| AvaI | CYCGRG | 1 cut(s) | 156 |
| AvaII | GGWCC | 2 cut(s) | 1568, 4481 |
| AvrII | CCTAGG | 1 cut(s) | 5363 |
| AxyI | CCTNAGG | 1 cut(s) | 1635 |
| BaeGI | GKGCMC | 4 cut(s) | 499, 2770, 4472, 5362 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3342, 3375 |
| BalI | TGGCCA | 1 cut(s) | 4812 |
| BamHI | GGATCC | 1 cut(s) | 5591 |
| BanI | GGYRCC | 1 cut(s) | 524 |
| BanII | GRGCYC | 3 cut(s) | 566, 3131, 5279 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1772, 1804 |
| BauI | CACGAG | 4 cut(s) | 308, 1647, 3124, 4272 |
| BbsI | GAAGAC | 5 cut(s) | 1670, 4166, 4243, 4280, 4868 |
| Bbv12I | GWGCWC | 8 cut(s) | 309, 796, 976, 2770, 2830, 3125, 3131, 5362 |
| BbvCI | CCTCAGC | 2 cut(s) | 3345, 4038 |
| BceAI | ACGGC | 4 cut(s) | 182, 427, 1525, 5190 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3611, 3645, 4919, 4953 |
| BciT130I | CCWGG | 6 cut(s) | 395, 1674, 2268, 4660, 4998, 5376 |
| BciVI | GTATCC | 2 cut(s) | 3343, 5255 |
| BclI | TGATCA | 3 cut(s) | 4594, 5239, 5254 |
| BcnI | CCSGG | 2 cut(s) | 2061, 5025 |
| BcuI | ACTAGT | 1 cut(s) | 1231 |
| BfmI | CTRYAG | 7 cut(s) | 834, 1437, 1800, 2994, 3357, 3420, 3498 |
| BfoI | RGCGCY | 4 cut(s) | 47, 94, 528, 1632 |
| BfuAI | ACCTGC | 3 cut(s) | 549, 634, 1343 |
| BfuI | GTATCC | 2 cut(s) | 3343, 5255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 167 |
| BlnI | CCTAGG | 1 cut(s) | 5363 |
| BlpI | GCTNAGC | 1 cut(s) | 2893 |
| BmcAI | AGTACT | 3 cut(s) | 706, 2252, 3975 |
| Bme1390I | CCNGG | 8 cut(s) | 395, 1674, 2061, 2268, 4660, 4998, 5025, 5376 |
| Bme18I | GGWCC | 2 cut(s) | 1568, 4481 |
| BmeT110I | CYCGRG | 1 cut(s) | 156 |
| BmgT120I | GGNCC | 7 cut(s) | 159, 168, 1568, 1745, 3185, 4481, 5462 |
| BmiI | GGNNCC | 9 cut(s) | 14, 392, 526, 1528, 1890, 2723, 3105, 4482, 5593 |
| BmrFI | CCNGG | 8 cut(s) | 395, 1674, 2061, 2268, 4660, 4998, 5025, 5376 |
| BmrI | ACTGGG | 3 cut(s) | 3341, 4482, 5469 |
| BmuI | ACTGGG | 3 cut(s) | 3341, 4482, 5469 |
| BpiI | GAAGAC | 5 cut(s) | 1670, 4166, 4243, 4280, 4868 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 20, 52, 3574, 3606 |
| BpmI | CTGGAG | 3 cut(s) | 1293, 2185, 3998 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1137, 3345, 4038, 5322 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2893 |
| BpuEI | CTTGAG | 4 cut(s) | 2588, 4087, 4511, 5318 |
| BpuMI | CCSGG | 2 cut(s) | 2061, 5025 |
| BsaAI | YACGTR | 1 cut(s) | 5014 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5484 |
| BsaHI | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| BsaI | GGTCTC | 2 cut(s) | 2394, 3543 |
| BsaWI | WCCGGW | 2 cut(s) | 4383, 4719 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1429, 1459 |
| Bse118I | RCCGGY | 1 cut(s) | 1853 |
| Bse21I | CCTNAGG | 1 cut(s) | 1635 |
| Bse3DI | GCAATG | 3 cut(s) | 3489, 3510, 4621 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5484 |
| BseBI | CCWGG | 6 cut(s) | 395, 1674, 2268, 4660, 4998, 5376 |
| BseJI | GATNNNNATC | 1 cut(s) | 5484 |
| BseMI | GCAATG | 3 cut(s) | 3489, 3510, 4621 |
| BseRI | GAGGAG | 2 cut(s) | 2767, 4626 |
| BseSI | GKGCMC | 4 cut(s) | 499, 2770, 4472, 5362 |
| BseX3I | CGGCCG | 1 cut(s) | 256 |
| BseYI | CCCAGC | 2 cut(s) | 2799, 3509 |
| BsgI | GTGCAG | 1 cut(s) | 4183 |
| Bsh1236I | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| Bsh1285I | CGRYCG | 2 cut(s) | 259, 4257 |
| BshNI | GGYRCC | 1 cut(s) | 524 |
| BsiEI | CGRYCG | 2 cut(s) | 259, 4257 |
| BsiHKAI | GWGCWC | 8 cut(s) | 309, 796, 976, 2770, 2830, 3125, 3131, 5362 |
| BsiHKCI | CYCGRG | 1 cut(s) | 156 |
| BslFI | GGGAC | 4 cut(s) | 1085, 3272, 4641, 5470 |
| BsmBI | CGTCTC | 2 cut(s) | 104, 5216 |
| BsmFI | GGGAC | 4 cut(s) | 1085, 3272, 4641, 5470 |
| BsmI | GAATGC | 4 cut(s) | 1392, 2338, 3205, 5422 |
| Bso31I | GGTCTC | 2 cut(s) | 2394, 3543 |
| BsoBI | CYCGRG | 1 cut(s) | 156 |
| Bsp1407I | TGTACA | 1 cut(s) | 5553 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2893 |
| Bsp19I | CCATGG | 1 cut(s) | 1225 |
| Bsp68I | TCGCGA | 1 cut(s) | 4929 |
| BspFNI | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| BspHI | TCATGA | 4 cut(s) | 754, 1129, 4513, 5606 |
| BspLI | GGNNCC | 9 cut(s) | 14, 392, 526, 1528, 1890, 2723, 3105, 4482, 5593 |
| BspMAI | CTGCAG | 4 cut(s) | 838, 1804, 3424, 3502 |
| BspMI | ACCTGC | 3 cut(s) | 549, 634, 1343 |
| BspQI | GCTCTTC | 5 cut(s) | 2640, 3113, 3208, 4755, 5267 |
| BspT107I | GGYRCC | 1 cut(s) | 524 |
| BspTNI | GGTCTC | 2 cut(s) | 2394, 3543 |
| BsrBI | CCGCTC | 3 cut(s) | 588, 2719, 5129 |
| BsrDI | GCAATG | 3 cut(s) | 3489, 3510, 4621 |
| BsrFI | RCCGGY | 1 cut(s) | 1853 |
| BsrGI | TGTACA | 1 cut(s) | 5553 |
| BssAI | RCCGGY | 1 cut(s) | 1853 |
| BssNI | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| BssSI | CACGAG | 4 cut(s) | 308, 1647, 3124, 4272 |
| BssT1I | CCWWGG | 4 cut(s) | 1225, 1944, 5363, 5541 |
| Bst2BI | CACGAG | 4 cut(s) | 308, 1647, 3124, 4272 |
| Bst2UI | CCWGG | 6 cut(s) | 395, 1674, 2268, 4660, 4998, 5376 |
| Bst4CI | ACNGT | 9 cut(s) | 912, 1441, 2099, 2194, 3358, 3779, 4031, 4242, 5089 |
| BstACI | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5441 |
| BstAUI | TGTACA | 1 cut(s) | 5553 |
| BstBAI | YACGTR | 1 cut(s) | 5014 |
| BstDSI | CCRYGG | 2 cut(s) | 1225, 3529 |
| BstEII | GGTNACC | 1 cut(s) | 4688 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3766 |
| BstFNI | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| BstH2I | RGCGCY | 4 cut(s) | 47, 94, 528, 1632 |
| BstHHI | GCGC | 8 cut(s) | 46, 93, 255, 527, 1340, 1631, 4279, 5510 |
| BstMCI | CGRYCG | 2 cut(s) | 259, 4257 |
| BstNI | CCWGG | 6 cut(s) | 395, 1674, 2268, 4660, 4998, 5376 |
| BstNSI | RCATGY | 5 cut(s) | 1154, 1883, 2229, 4209, 5508 |
| BstPI | GGTNACC | 1 cut(s) | 4688 |
| BstSCI | CCNGG | 8 cut(s) | 393, 1672, 2059, 2266, 4658, 4996, 5023, 5374 |
| BstSFI | CTRYAG | 7 cut(s) | 834, 1437, 1800, 2994, 3357, 3420, 3498 |
| BstSLI | GKGCMC | 4 cut(s) | 499, 2770, 4472, 5362 |
| BstUI | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| BstV2I | GAAGAC | 5 cut(s) | 1670, 4166, 4243, 4280, 4868 |
| BstX2I | RGATCY | 5 cut(s) | 1699, 1873, 2184, 3401, 5591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BstYI | RGATCY | 5 cut(s) | 1699, 1873, 2184, 3401, 5591 |
| BstZI | CGGCCG | 1 cut(s) | 256 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1635 |
| BsuI | GTATCC | 2 cut(s) | 3343, 5255 |
| BtgI | CCRYGG | 2 cut(s) | 1225, 3529 |
| BtgZI | GCGATG | 5 cut(s) | 236, 572, 1179, 3102, 4944 |
| BtsI | GCAGTG | 6 cut(s) | 914, 990, 3712, 4171, 5265, 5394 |
| BtuMI | TCGCGA | 1 cut(s) | 4929 |
| BveI | ACCTGC | 3 cut(s) | 549, 634, 1343 |
| CaiI | CAGNNNCTG | 4 cut(s) | 916, 2267, 3002, 3440 |
| CciI | TCATGA | 4 cut(s) | 754, 1129, 4513, 5606 |
| CciNI | GCGGCCGC | 1 cut(s) | 256 |
| CfoI | GCGC | 8 cut(s) | 46, 93, 255, 527, 1340, 1631, 4279, 5510 |
| Cfr10I | RCCGGY | 1 cut(s) | 1853 |
| Cfr13I | GGNCC | 7 cut(s) | 159, 168, 1568, 1745, 3185, 4481, 5462 |
| Cfr42I | CCGCGG | 1 cut(s) | 3532 |
| CseI | GACGC | 3 cut(s) | 667, 2804, 3570 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2160, 2195, 5166, 5201 |
| DinI | GGCGCC | 1 cut(s) | 526 |
| DraI | TTTAAA | 1 cut(s) | 2310 |
| EaeI | YGGCCR | 5 cut(s) | 210, 256, 903, 4810, 5203 |
| EagI | CGGCCG | 1 cut(s) | 256 |
| EciI | GGCGGA | 2 cut(s) | 41, 429 |
| Ecl136II | GAGCTC | 1 cut(s) | 3129 |
| EclXI | CGGCCG | 1 cut(s) | 256 |
| Eco130I | CCWWGG | 4 cut(s) | 1225, 1944, 5363, 5541 |
| Eco24I | GRGCYC | 3 cut(s) | 566, 3131, 5279 |
| Eco31I | GGTCTC | 2 cut(s) | 2394, 3543 |
| Eco32I | GATATC | 1 cut(s) | 5044 |
| Eco47I | GGWCC | 2 cut(s) | 1568, 4481 |
| Eco47III | AGCGCT | 2 cut(s) | 92, 1630 |
| Eco52I | CGGCCG | 1 cut(s) | 256 |
| Eco53kI | GAGCTC | 1 cut(s) | 3129 |
| Eco57I | CTGAAG | 9 cut(s) | 485, 617, 947, 1053, 1667, 1777, 2244, 4274, 5451 |
| Eco81I | CCTNAGG | 1 cut(s) | 1635 |
| Eco88I | CYCGRG | 1 cut(s) | 156 |
| Eco91I | GGTNACC | 1 cut(s) | 4688 |
| EcoICRI | GAGCTC | 1 cut(s) | 3129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3766 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1568, 3185, 4481 |
| EcoO65I | GGTNACC | 1 cut(s) | 4688 |
| EcoRI | GAATTC | 3 cut(s) | 271, 2008, 2925 |
| EcoRII | CCWGG | 6 cut(s) | 393, 1672, 2266, 4658, 4996, 5374 |
| EcoRV | GATATC | 1 cut(s) | 5044 |
| EcoT14I | CCWWGG | 4 cut(s) | 1225, 1944, 5363, 5541 |
| EcoT38I | GRGCYC | 3 cut(s) | 566, 3131, 5279 |
| EgeI | GGCGCC | 1 cut(s) | 526 |
| EheI | GGCGCC | 1 cut(s) | 526 |
| ErhI | CCWWGG | 4 cut(s) | 1225, 1944, 5363, 5541 |
| Esp3I | CGTCTC | 2 cut(s) | 104, 5216 |
| FaqI | GGGAC | 4 cut(s) | 1085, 3272, 4641, 5470 |
| FauI | CCCGC | 3 cut(s) | 15, 2266, 5122 |
| FbaI | TGATCA | 3 cut(s) | 4594, 5239, 5254 |
| FblI | GTMKAC | 3 cut(s) | 961, 2483, 3020 |
| FriOI | GRGCYC | 3 cut(s) | 566, 3131, 5279 |
| FspI | TGCGCA | 1 cut(s) | 1339 |
| GlaI | GCGC | 8 cut(s) | 45, 92, 254, 526, 1339, 1630, 4278, 5509 |
| GsaI | CCCAGC | 2 cut(s) | 2803, 3513 |
| GsuI | CTGGAG | 3 cut(s) | 1293, 2185, 3998 |
| HaeII | RGCGCY | 4 cut(s) | 47, 94, 528, 1632 |
| HgaI | GACGC | 3 cut(s) | 667, 2804, 3570 |
| HhaI | GCGC | 8 cut(s) | 46, 93, 255, 527, 1340, 1631, 4279, 5510 |
| Hin1I | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| Hin6I | GCGC | 8 cut(s) | 44, 91, 253, 525, 1338, 1629, 4277, 5508 |
| HinP1I | GCGC | 8 cut(s) | 44, 91, 253, 525, 1338, 1629, 4277, 5508 |
| HincII | GTYRAC | 7 cut(s) | 130, 882, 1981, 2197, 3600, 4197, 4621 |
| HindII | GTYRAC | 7 cut(s) | 130, 882, 1981, 2197, 3600, 4197, 4621 |
| HindIII | AAGCTT | 5 cut(s) | 1925, 2379, 2585, 2890, 5522 |
| HpaI | GTTAAC | 1 cut(s) | 130 |
| Hpy99I | CGWCG | 4 cut(s) | 434, 2094, 3051, 3829 |
| HpyCH4III | ACNGT | 9 cut(s) | 912, 1441, 2099, 2194, 3358, 3779, 4031, 4242, 5089 |
| HpyCH4IV | ACGT | 5 cut(s) | 2071, 2089, 2157, 4357, 5013 |
| HpySE526I | ACGT | 5 cut(s) | 2071, 2089, 2157, 4357, 5013 |
| Hsp92I | GRCGYC | 3 cut(s) | 525, 2089, 3562 |
| HspAI | GCGC | 8 cut(s) | 44, 91, 253, 525, 1338, 1629, 4277, 5508 |
| KasI | GGCGCC | 1 cut(s) | 524 |
| Ksp22I | TGATCA | 3 cut(s) | 4594, 5239, 5254 |
| KspAI | GTTAAC | 1 cut(s) | 130 |
| KspI | CCGCGG | 1 cut(s) | 3532 |
| LguI | GCTCTTC | 5 cut(s) | 2640, 3113, 3208, 4755, 5267 |
| LmnI | GCTCC | 8 cut(s) | 12, 304, 1147, 1358, 1636, 2671, 2999, 4639 |
| MaeII | ACGT | 5 cut(s) | 2071, 2089, 2157, 4357, 5013 |
| MbiI | CCGCTC | 3 cut(s) | 588, 2719, 5129 |
| MfeI | CAATTG | 2 cut(s) | 4935, 4965 |
| MflI | RGATCY | 5 cut(s) | 1699, 1873, 2184, 3401, 5591 |
| MlsI | TGGCCA | 1 cut(s) | 4812 |
| MluNI | TGGCCA | 1 cut(s) | 4812 |
| Mly113I | GGCGCC | 1 cut(s) | 525 |
| MmeI | TCCRAC | 5 cut(s) | 351, 1455, 3654, 3781, 4324 |
| Mox20I | TGGCCA | 1 cut(s) | 4812 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2910, 2938, 5422 |
| MscI | TGGCCA | 1 cut(s) | 4812 |
| MslI | CAYNNNNRTG | 4 cut(s) | 221, 807, 849, 1535 |
| Msp20I | TGGCCA | 1 cut(s) | 4812 |
| MspA1I | CMGCKG | 4 cut(s) | 664, 1079, 3531, 3625 |
| MspR9I | CCNGG | 8 cut(s) | 395, 1674, 2061, 2268, 4660, 4998, 5025, 5376 |
| MunI | CAATTG | 2 cut(s) | 4935, 4965 |
| Mva1269I | GAATGC | 4 cut(s) | 1392, 2338, 3205, 5422 |
| MvaI | CCWGG | 6 cut(s) | 395, 1674, 2268, 4660, 4998, 5376 |
| MvnI | CGCG | 5 cut(s) | 221, 253, 255, 3531, 4929 |
| NarI | GGCGCC | 1 cut(s) | 525 |
| NciI | CCSGG | 2 cut(s) | 2061, 5025 |
| NcoI | CCATGG | 1 cut(s) | 1225 |
| NlaIV | GGNNCC | 9 cut(s) | 14, 392, 526, 1528, 1890, 2723, 3105, 4482, 5593 |
| NmeAIII | GCCGAG | 4 cut(s) | 1933, 2470, 3320, 4876 |
| NmuCI | GTSAC | 7 cut(s) | 425, 912, 2287, 2543, 3374, 3885, 4919 |
| NotI | GCGGCCGC | 1 cut(s) | 256 |
| NruI | TCGCGA | 1 cut(s) | 4929 |
| NsbI | TGCGCA | 1 cut(s) | 1339 |
| NspI | RCATGY | 5 cut(s) | 1154, 1883, 2229, 4209, 5508 |
| PaeI | GCATGC | 2 cut(s) | 1154, 4209 |
| PagI | TCATGA | 4 cut(s) | 754, 1129, 4513, 5606 |
| PaqCI | CACCTGC | 1 cut(s) | 634 |
| PasI | CCCWGGG | 1 cut(s) | 2267 |
| PciI | ACATGT | 1 cut(s) | 2225 |
| PciSI | GCTCTTC | 5 cut(s) | 2640, 3113, 3208, 4755, 5267 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 76, 2077, 2929, 3824 |
| PctI | GAATGC | 4 cut(s) | 1392, 2338, 3205, 5422 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2910, 2938, 5422 |
| PflFI | GACNNNGTC | 1 cut(s) | 4625 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1027 |
| PluTI | GGCGCC | 1 cut(s) | 528 |
| Ppu21I | YACGTR | 1 cut(s) | 5014 |
| PpuMI | RGGWCCY | 2 cut(s) | 1568, 4481 |
| PscI | ACATGT | 1 cut(s) | 2225 |
| PsiI | TTATAA | 1 cut(s) | 4797 |
| Psp124BI | GAGCTC | 1 cut(s) | 3131 |
| Psp1406I | AACGTT | 1 cut(s) | 2157 |
| Psp5II | RGGWCCY | 2 cut(s) | 1568, 4481 |
| Psp6I | CCWGG | 6 cut(s) | 393, 1672, 2266, 4658, 4996, 5374 |
| PspEI | GGTNACC | 1 cut(s) | 4688 |
| PspFI | CCCAGC | 2 cut(s) | 2799, 3509 |
| PspGI | CCWGG | 6 cut(s) | 393, 1672, 2266, 4658, 4996, 5374 |
| PspN4I | GGNNCC | 9 cut(s) | 14, 392, 526, 1528, 1890, 2723, 3105, 4482, 5593 |
| PspPI | GGNCC | 7 cut(s) | 159, 168, 1568, 1745, 3185, 4481, 5462 |
| PspPPI | RGGWCCY | 2 cut(s) | 1568, 4481 |
| PstI | CTGCAG | 4 cut(s) | 838, 1804, 3424, 3502 |
| PstNI | CAGNNNCTG | 4 cut(s) | 916, 2267, 3002, 3440 |
| PsuI | RGATCY | 5 cut(s) | 1699, 1873, 2184, 3401, 5591 |
| PsyI | GACNNNGTC | 1 cut(s) | 4625 |
| PvuII | CAGCTG | 3 cut(s) | 664, 1079, 3625 |
| RruI | TCGCGA | 1 cut(s) | 4929 |
| RseI | CAYNNNNRTG | 4 cut(s) | 221, 807, 849, 1535 |
| SacI | GAGCTC | 1 cut(s) | 3131 |
| SacII | CCGCGG | 1 cut(s) | 3532 |
| SapI | GCTCTTC | 5 cut(s) | 2640, 3113, 3208, 4755, 5267 |
| Sau96I | GGNCC | 7 cut(s) | 159, 168, 1568, 1745, 3185, 4481, 5462 |
| ScaI | AGTACT | 3 cut(s) | 706, 2252, 3975 |
| ScrFI | CCNGG | 8 cut(s) | 395, 1674, 2061, 2268, 4660, 4998, 5025, 5376 |
| SfcI | CTRYAG | 7 cut(s) | 834, 1437, 1800, 2994, 3357, 3420, 3498 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 167 |
| SfoI | GGCGCC | 1 cut(s) | 526 |
| Sfr303I | CCGCGG | 1 cut(s) | 3532 |
| SgrBI | CCGCGG | 1 cut(s) | 3532 |
| SinI | GGWCC | 2 cut(s) | 1568, 4481 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 221, 807, 849, 1535 |
| SmlI | CTYRAG | 4 cut(s) | 2603, 4066, 4490, 5297 |
| SmoI | CTYRAG | 4 cut(s) | 2603, 4066, 4490, 5297 |
| SpeI | ACTAGT | 1 cut(s) | 1231 |
| SphI | GCATGC | 2 cut(s) | 1154, 4209 |
| SspDI | GGCGCC | 1 cut(s) | 524 |
| SspI | AATATT | 3 cut(s) | 1837, 4454, 5169 |
| SstI | GAGCTC | 1 cut(s) | 3131 |
| StyD4I | CCNGG | 8 cut(s) | 393, 1672, 2059, 2266, 4658, 4996, 5023, 5374 |
| StyI | CCWWGG | 4 cut(s) | 1225, 1944, 5363, 5541 |
| TaaI | ACNGT | 9 cut(s) | 912, 1441, 2099, 2194, 3358, 3779, 4031, 4242, 5089 |
| TaiI | ACGT | 5 cut(s) | 2074, 2092, 2160, 4360, 5016 |
| TaqII | GACCGA | 2 cut(s) | 1759, 3567 |
| TauI | GCSGC | 6 cut(s) | 191, 258, 261, 264, 3531, 5110 |
| TseFI | GTSAC | 7 cut(s) | 425, 912, 2287, 2543, 3374, 3885, 4919 |
| Tsp45I | GTSAC | 7 cut(s) | 425, 912, 2287, 2543, 3374, 3885, 4919 |
| TspGWI | ACGGA | 4 cut(s) | 398, 3813, 4358, 5240 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4625 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1027 |
| VneI | GTGCAC | 2 cut(s) | 2766, 5358 |
| VpaK11BI | GGWCC | 2 cut(s) | 1568, 4481 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3766 |
| XbaI | TCTAGA | 1 cut(s) | 4906 |
| XceI | RCATGY | 5 cut(s) | 1154, 1883, 2229, 4209, 5508 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 220, 892, 4637, 5351 |
| XmaJI | CCTAGG | 1 cut(s) | 5363 |
| XmiI | GTMKAC | 3 cut(s) | 961, 2483, 3020 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2910, 2938, 5422 |
| ZraI | GACGTC | 1 cut(s) | 2090 |
| ZrmI | AGTACT | 3 cut(s) | 706, 2252, 3975 |