Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003360

Physical Location & Seq

Genomic Coordinates Reverse (-)

1846496 .. 1847397

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG018000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCTATCGGTCATTCCCAGTTAATGTACTTCAGCCCTGCAGAGATGATTGAGTCTTTGTTAAGTATGACAAATATTGCAAGTTTCTTGGCCGGTGTTTTAGCATGGAAAGATCTGCATGTCTTGGTTCCTGCTCTCCAAATTTCCGAGATACTCATGGAGAAGCTTCCCAAGACTTTCTCCAAGGTGTTTGTCAGAGAAGGTGAGGTTCATGCTGTTGACCAACTTATTTTAGCTGGAACTCCGAATTCAGTTACTTCACAAGTCTCTTCTGCTGAAAAGGACAATGATTCTGTGCCGGGATCATCACGTTCTAGGCATTATAGACGTTGCAACAGTAACTCAAATCCAGATGGAAATTCATTGGAAGAATCGAAGATTCCTGCTTCGGTAACCCTTGGTTCGCCTCCAAGTTCAGTCGAGATCCCAACTGTAAACTCCAGCCTTTGTGTAGCTGTGAGTACATGTGCAAAAGCGTTTAAGGACAAGTACTGCCCTTCAGACCCTGGGGCGGGTGAAGTTGGTGTCACCGATGATCTATTGCATTTAAAAAATCTGTGTGTGAAGTTGAATGCCGGTGTAGATGACCCAAAAACAAAAGCAGAGGGAAAATCAAAAGCTTCTGGGTCTCGCTTAGTTGATAGTTATGCAAATAAGGAAGAGTATTTGATTGGTGTGGTAGCCGAACTAAGCAAAGGGGATGGTGTGTCTACCTTTGAGTTCATAGGTAGCAGTGTTGTCGCAGCTTTGCTGAACTATTTTTCTTGTTTTTTACTTCTCGAAGGAGAGAATTTCAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

267

Amino Acids

28.51

Weight (kDa)

5.31

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38600 AT4G38600 AT4G38600
fragaria_vesca	FvH4_2g01290
malus_domestica	MD00G1173700.v1.1 MD00G1173800.v1.1 MD00G1173900.v1.1 MD05G1120900.v1.1 MD10G1095300.v1.1
prunus_persica	Prupe.8G164700_v2.0.a1
pyrus_communis	pycom05g11490 pycom05g11500 pycom10g10610 pycom10g10620
rosa_chinensis	RchiOBHm_Chr6g0251951 RchiOBHm_Chr6g0252001
rosa_laevigata	RLG00000015410 RLG00000015417
rosa_multiflora	Rmu_sc0002522.1_g000052 Rmu_sc0002522.1_g000062 Rmu_ssc0000303.1_g000016
rosa_roxburghii	Rroxscaffold_7G00216270
rosa_rugosa	Rorug05G0505300.1
rosa_samantha	Rh6AG016800 Rh6AG017300 Rh6AG017400 Rh6AG018000 Rh6AG018100 Rh6AG018900 Rh6AG019000 Rh6CG011400 Rh6DG012700
rosa_wichuraiana	Rw6G000110 Rw6G000120 Rw6G000150 Rw6G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	2 cut(s)	310, 418
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	141, 247, 358, 790
AcuI	CTGAAG	2 cut(s)	16, 483
AfaI	GTAC	3 cut(s)	29, 463, 491
AfiI	CCNNNNNNNGG	2 cut(s)	511, 512
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	6 cut(s)	166, 236, 455, 620, 746, 801
AluI	AGCT	6 cut(s)	166, 236, 455, 620, 746, 801
Alw26I	GTCTC	2 cut(s)	271, 633
AlwI	GGATC	2 cut(s)	310, 418
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	4 cut(s)	141, 247, 358, 790
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	215, 520, 527
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	2 cut(s)	347, 695
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	271, 633
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	744
BlsI	GCNGC	1 cut(s)	745
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	300, 507
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	300, 507
BmrI	ACTGGG	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	183, 397, 505, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 512
Bse118I	RCCGGY	2 cut(s)	92, 575
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	183, 397, 505, 506
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	2 cut(s)	511, 512
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	755
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	93, 299, 576
BslI	CCNNNNNNNGG	2 cut(s)	511, 512
BsmAI	GTCTC	2 cut(s)	271, 633
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	112, 302, 423, 535
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	310, 418
BspTNI	GGTCTC	1 cut(s)	633
BsrFI	RCCGGY	2 cut(s)	92, 575
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	2 cut(s)	92, 575
BssECI	CCNNGG	4 cut(s)	183, 397, 505, 506
BssMI	GATC	4 cut(s)	112, 302, 423, 535
BssT1I	CCWWGG	2 cut(s)	183, 397
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	338, 433
Bst6I	CTCTTC	2 cut(s)	274, 654
BstDEI	CTNAG	2 cut(s)	634, 689
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	706
BstKTI	GATC	4 cut(s)	115, 305, 426, 538
BstMAI	GTCTC	2 cut(s)	271, 633
BstMBI	GATC	4 cut(s)	112, 302, 423, 535
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	122, 468
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	298, 505
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	755
BstX2I	RGATCY	2 cut(s)	112, 423
BstYI	RGATCY	2 cut(s)	112, 423
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	1 cut(s)	739
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr10I	RCCGGY	2 cut(s)	92, 575
Csp6I	GTAC	3 cut(s)	28, 462, 490
CviAII	CATG	5 cut(s)	105, 119, 157, 212, 465
CviQI	GTAC	3 cut(s)	28, 462, 490
DdeI	CTNAG	2 cut(s)	634, 689
DpnI	GATC	4 cut(s)	114, 304, 425, 537
DpnII	GATC	4 cut(s)	112, 302, 423, 535
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	274, 654
EarI	CTCTTC	2 cut(s)	274, 654
Eco130I	CCWWGG	2 cut(s)	183, 397
Eco31I	GGTCTC	1 cut(s)	633
Eco57I	CTGAAG	2 cut(s)	16, 483
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	183, 397
ErhI	CCWWGG	2 cut(s)	183, 397
FaeI	CATG	5 cut(s)	108, 122, 160, 215, 468
FaiI	YATR	9 cut(s)	68, 106, 120, 158, 213, 324, 466, 648, 725
FatI	CATG	5 cut(s)	104, 118, 156, 211, 464
FauI	CCCGC	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	1 cut(s)	744
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	1 cut(s)	744
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	3 cut(s)	93, 299, 576
Hin1II	CATG	5 cut(s)	108, 122, 160, 215, 468
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	164, 618
HinfI	GANTC	4 cut(s)	53, 290, 371, 379
HpaII	CCGG	3 cut(s)	93, 299, 576
HphI	GGTGA	3 cut(s)	215, 520, 527
Hpy166II	GTNNAC	3 cut(s)	220, 436, 711
Hpy188I	TCNGA	5 cut(s)	148, 197, 246, 502, 797
Hpy188III	TCNNGA	3 cut(s)	350, 421, 779
Hpy8I	GTNNAC	3 cut(s)	220, 436, 711
HpyAV	CCTTC	3 cut(s)	194, 507, 776
HpyCH4III	ACNGT	2 cut(s)	338, 433
HpyCH4IV	ACGT	2 cut(s)	310, 328
HpyCH4V	TGCA	7 cut(s)	41, 80, 118, 333, 470, 544, 650
HpyF3I	CTNAG	2 cut(s)	634, 689
HpySE526I	ACGT	2 cut(s)	310, 328
Hsp92II	CATG	5 cut(s)	108, 122, 160, 215, 468
Kzo9I	GATC	4 cut(s)	112, 302, 423, 535
Lsp1109I	GCAGC	1 cut(s)	755
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	310, 328
MaeIII	GTNAC	4 cut(s)	253, 338, 391, 526
MalI	GATC	4 cut(s)	114, 304, 425, 537
MboI	GATC	4 cut(s)	112, 302, 423, 535
MboII	GAAGA	4 cut(s)	261, 380, 388, 671
MflI	RGATCY	2 cut(s)	112, 423
MluCI	AATT	4 cut(s)	141, 247, 358, 790
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	199, 417, 598
MseI	TTAA	4 cut(s)	23, 62, 480, 548
MspI	CCGG	3 cut(s)	93, 299, 576
MspR9I	CCNGG	2 cut(s)	300, 507
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	507
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	112, 302, 423, 535
NlaIII	CATG	5 cut(s)	108, 122, 160, 215, 468
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	122, 468
PasI	CCCWGGG	1 cut(s)	506
PciI	ACATGT	1 cut(s)	464
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	3 cut(s)	290, 371, 379
PkrI	GCNGC	1 cut(s)	745
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PscI	ACATGT	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	505
PspEI	GGTNACC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	112, 423
RsaI	GTAC	3 cut(s)	29, 463, 491
RsaNI	GTAC	3 cut(s)	28, 462, 490
SaqAI	TTAA	4 cut(s)	23, 62, 480, 548
SatI	GCNGC	1 cut(s)	744
Sau3AI	GATC	4 cut(s)	112, 302, 423, 535
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	300, 507
SfcI	CTRYAG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	141, 247, 358, 790
SsiI	CCGC	1 cut(s)	512
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	298, 505
StyI	CCWWGG	2 cut(s)	183, 397
TaaI	ACNGT	2 cut(s)	338, 433
TaiI	ACGT	2 cut(s)	313, 331
TaqI	TCGA	3 cut(s)	374, 420, 780
TasI	AATT	4 cut(s)	141, 247, 358, 790
TatI	WGTACW	3 cut(s)	27, 461, 489
TfiI	GAWTC	3 cut(s)	290, 371, 379
Tru1I	TTAA	4 cut(s)	23, 62, 480, 548
Tru9I	TTAA	4 cut(s)	23, 62, 480, 548
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	200, 351, 712
TspRI	CASTG	1 cut(s)	739
XapI	RAATTY	4 cut(s)	141, 247, 358, 790
XceI	RCATGY	2 cut(s)	122, 468
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.