FvH4_2g02690

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
2149047 .. 2153572
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02690.t1

Sequence Viewer

Length: 1422 bp
ATGAACAACCTGTCGACCTTCGCAGCCCTTGATGCCAACCCACTCTCTAAACCTTGCTACTTGGGCGCCCAACACAATAGGTTTAACCTCCTCCAGCGCCCCAGAAATGTTGTTGTATGCTCTGTGAAGCCCTCAGTTGCCTCGCCCTCATCGCTAAGTGTGGCTGGGTCACCCAACAGCGGACCTAATCGAATTGAGTCTCTAACCCAGGTGTCCGGAGTTTTGGGCTGCCAGTGGGGTGATGAAGGTAAAGGCAAACTCGTTGACATCTTGGCCCAGCACTTTGACGTTGTTGCTCGTTGTCAGGTAAGACAAAGAAACACTCTGCTAGCATTGCCAGATCATTTTGGTATCTTGATTGTCTTTTTTTTTTTTTTTTTTTTTTTCCCGGGAGGAGCTAATGCCGGACATACCATTTACAATGTAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCGTCTGGAATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGTGTTGTGGTGCATCTTCCAGGCCTCTTTAAAGAGATTGATGGCCTTGAATCCAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTTTTATTTGATTTCCACCAAGAAGTGGATAGGCTTCGAGAAGCTGAGCTTGCTAAATCTTTCATCGGTACAACCAAGAGAGGCATTGGACCTTGTTATTCTAGCAAGGTTATCCGGAATGGCATTCGAGTTGGTGACTTGAGGCACATGGACACTTTACCTCAGAAGCTAGATATTCTGTTGTCAGATGCTGCATCAAGATTCAAAGATTTTAAGTATGACCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATCTCCGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACATACCCCTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACTGGTTTGGGTATTGCTCCCAGAGTTTTAGGTGATCTTGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACTGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAAGAGTTTGGAACAACTACCGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCCGCAATTCAGTTGGGTATTGCCTACAAAACTAGTGATGGGACACCAATCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGAAAGTTGAATATGAAGTATTACCCGGATAG

Protein Analysis

474

Amino Acids

51.67

Weight (kDa)

8.21

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 74 - 102 7.1e-11 Adenylosuccinate synthetase
Adenylsucc_synt PF00709 129 - 473 1.1e-135 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 1 cut(s) 14
AccIII TCCGGA 2 cut(s) 215, 717
AciI CCGC 2 cut(s) 180, 1305
AcsI RAATTY 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 4 cut(s) 673, 857, 903, 1036
AfiI CCNNNNNNNGG 3 cut(s) 179, 628, 1022
AgeI ACCGGT 1 cut(s) 1190
AgsI TTSAA 4 cut(s) 551, 808, 950, 1400
AhlI ACTAGT 1 cut(s) 1334
AjnI CCWGG 3 cut(s) 207, 520, 1363
AluBI AGCT 5 cut(s) 398, 647, 652, 772, 1022
AluI AGCT 5 cut(s) 398, 647, 652, 772, 1022
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 204, 592
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 388
Aor13HI TCCGGA 2 cut(s) 215, 717
AoxI GGCC 3 cut(s) 273, 523, 544
ApeKI GCWGC 4 cut(s) 23, 228, 794, 1242
ApoI RAATTY 1 cut(s) 465
AseI ATTAAT 1 cut(s) 1251
AsiGI ACCGGT 1 cut(s) 1190
AspLEI GCGC 2 cut(s) 68, 99
AspS9I GGNCC 4 cut(s) 182, 274, 692, 1115
AsuC2I CCSGG 3 cut(s) 389, 390, 1416
AsuHPI GGTGA 9 cut(s) 162, 251, 440, 593, 749, 1079, 1096, 1160, 1267
AsuNHI GCTAGC 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 3 cut(s) 182, 692, 1115
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 4 cut(s) 35, 215, 781, 1229
BccI CCATC 3 cut(s) 536, 929, 1334
BciT130I CCWGG 3 cut(s) 209, 522, 1365
BciVI GTATCC 1 cut(s) 472
BcnI CCSGG 3 cut(s) 389, 390, 1416
BcoDI GTCTC 2 cut(s) 204, 592
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 5 cut(s) 329, 705, 773, 1283, 1335
BfoI RGCGCY 2 cut(s) 69, 100
BfuI GTATCC 1 cut(s) 472
BglII AGATCT 1 cut(s) 1369
BisI GCNGC 4 cut(s) 24, 229, 795, 1243
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 4 cut(s) 25, 230, 796, 1244
Bme1390I CCNGG 6 cut(s) 209, 389, 390, 522, 1365, 1416
Bme18I GGWCC 3 cut(s) 182, 692, 1115
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 4 cut(s) 182, 274, 692, 1115
BmiI GGNNCC 2 cut(s) 67, 882
BmrFI CCNGG 6 cut(s) 209, 389, 390, 522, 1365, 1416
BmsI GCATC 5 cut(s) 22, 523, 781, 806, 822
BmtI GCTAGC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 77, 1386
Bpu1102I GCTNAGC 1 cut(s) 648
BpuEI CTTGAG 3 cut(s) 763, 994, 1403
BpuMI CCSGG 3 cut(s) 389, 390, 1416
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 3 cut(s) 207, 388, 1363
BsaWI WCCGGW 3 cut(s) 215, 717, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 628, 1022
Bse118I RCCGGY 1 cut(s) 1190
Bse1I ACTGG 2 cut(s) 232, 1042
Bse3DI GCAATG 2 cut(s) 332, 888
BseAI TCCGGA 2 cut(s) 215, 717
BseBI CCWGG 3 cut(s) 209, 522, 1365
BseDI CCNNGG 3 cut(s) 207, 388, 1363
BseLI CCNNNNNNNGG 3 cut(s) 179, 628, 1022
BseMI GCAATG 2 cut(s) 332, 888
BseMII CTCAG 4 cut(s) 147, 639, 779, 861
BseNI ACTGG 2 cut(s) 232, 1042
BseRI GAGGAG 2 cut(s) 80, 408
BseXI GCAGC 4 cut(s) 35, 215, 781, 1229
BseYI CCCAGC 2 cut(s) 164, 276
Bsh1285I CGRYCG 1 cut(s) 1195
BshFI GGCC 3 cut(s) 275, 525, 546
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 1190
BsiEI CGRYCG 1 cut(s) 1195
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 6 cut(s) 216, 389, 405, 718, 1191, 1416
BslFI GGGAC 1 cut(s) 1357
BslI CCNNNNNNNGG 3 cut(s) 179, 628, 1022
BsmAI GTCTC 2 cut(s) 204, 592
BsmFI GGGAC 1 cut(s) 1357
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 3 cut(s) 275, 525, 546
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 601
Bsp13I TCCGGA 2 cut(s) 215, 717
Bsp143I GATC 4 cut(s) 340, 592, 1069, 1369
Bsp1720I GCTNAGC 1 cut(s) 648
BspACI CCGC 2 cut(s) 180, 1305
BspANI GGCC 3 cut(s) 275, 525, 546
BspCNI CTCAG 4 cut(s) 146, 640, 778, 862
BspEI TCCGGA 2 cut(s) 215, 717
BspLI GGNNCC 2 cut(s) 67, 882
BspOI GCTAGC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 592
BsrDI GCAATG 2 cut(s) 332, 888
BsrFI RCCGGY 1 cut(s) 1190
BsrI ACTGG 2 cut(s) 232, 1042
BssAI RCCGGY 1 cut(s) 1190
BssECI CCNNGG 3 cut(s) 207, 388, 1363
BssMI GATC 4 cut(s) 340, 592, 1069, 1369
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 3 cut(s) 209, 522, 1365
Bst4CI ACNGT 1 cut(s) 901
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 330, 654
BstDEI CTNAG 8 cut(s) 133, 155, 648, 765, 836, 870, 1135, 1157
BstEII GGTNACC 2 cut(s) 168, 1148
BstH2I RGCGCY 2 cut(s) 69, 100
BstHHI GCGC 2 cut(s) 68, 99
BstKTI GATC 4 cut(s) 343, 595, 1072, 1372
BstMAI GTCTC 2 cut(s) 204, 592
BstMBI GATC 4 cut(s) 340, 592, 1069, 1369
BstMCI CGRYCG 1 cut(s) 1195
BstMWI GCNNNNNNNGC 6 cut(s) 32, 63, 151, 334, 653, 1203
BstNI CCWGG 3 cut(s) 209, 522, 1365
BstPI GGTNACC 2 cut(s) 168, 1148
BstSCI CCNGG 6 cut(s) 207, 387, 388, 520, 1363, 1414
BstV1I GCAGC 4 cut(s) 35, 215, 781, 1229
BstX2I RGATCY 1 cut(s) 1369
BstXI CCANNNNNNTGG 1 cut(s) 1253
BstYI RGATCY 1 cut(s) 1369
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 3 cut(s) 275, 525, 546
BtgZI GCGATG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 239, 1125, 1229
Cac8I GCNNGC 2 cut(s) 330, 654
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 2 cut(s) 68, 99
Cfr10I RCCGGY 1 cut(s) 1190
Cfr13I GGNCC 4 cut(s) 182, 274, 692, 1115
Cfr9I CCCGGG 1 cut(s) 388
Csp6I GTAC 4 cut(s) 672, 856, 902, 1035
CspAI ACCGGT 1 cut(s) 1190
CviAII CATG 1 cut(s) 751
CviQI GTAC 4 cut(s) 672, 856, 902, 1035
DdeI CTNAG 8 cut(s) 133, 155, 648, 765, 836, 870, 1135, 1157
DinI GGCGCC 1 cut(s) 67
DpnI GATC 4 cut(s) 342, 594, 1071, 1371
DpnII GATC 4 cut(s) 340, 592, 1069, 1369
DraI TTTAAA 1 cut(s) 532
Eco147I AGGCCT 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 182, 692, 1115
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 388
Eco91I GGTNACC 2 cut(s) 168, 1148
EcoO65I GGTNACC 2 cut(s) 168, 1148
EcoRI GAATTC 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 207, 520, 1363
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 754
FaiI YATR 8 cut(s) 118, 411, 752, 822, 991, 1093, 1223, 1404
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 1 cut(s) 1357
FatI CATG 1 cut(s) 750
FauI CCCGC 1 cut(s) 1312
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 24, 229, 795, 1243
Fsp4HI GCNGC 4 cut(s) 24, 229, 795, 1243
FspBI CTAG 5 cut(s) 329, 705, 773, 1283, 1335
GlaI GCGC 2 cut(s) 67, 98
GluI GCNGC 4 cut(s) 24, 229, 795, 1243
GsaI CCCAGC 2 cut(s) 168, 280
GsuI CTGGAG 2 cut(s) 77, 1386
HaeII RGCGCY 2 cut(s) 69, 100
HaeIII GGCC 3 cut(s) 275, 525, 546
HapII CCGG 6 cut(s) 216, 389, 405, 718, 1191, 1416
HhaI GCGC 2 cut(s) 68, 99
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 2 cut(s) 66, 97
HinP1I GCGC 2 cut(s) 66, 97
HincII GTYRAC 2 cut(s) 15, 265
HindII GTYRAC 2 cut(s) 15, 265
HinfI GANTC 3 cut(s) 197, 551, 804
HpaII CCGG 6 cut(s) 216, 389, 405, 718, 1191, 1416
HphI GGTGA 9 cut(s) 162, 251, 440, 593, 749, 1079, 1096, 1160, 1267
Hpy166II GTNNAC 2 cut(s) 15, 265
Hpy188I TCNGA 5 cut(s) 592, 768, 790, 928, 1297
Hpy188III TCNNGA 8 cut(s) 216, 355, 462, 641, 718, 801, 1172, 1382
Hpy8I GTNNAC 2 cut(s) 15, 265
Hpy99I CGWCG 1 cut(s) 1206
HpyAV CCTTC 9 cut(s) 28, 239, 422, 570, 895, 944, 1026, 1163, 1388
HpyCH4III ACNGT 1 cut(s) 901
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 5 cut(s) 443, 514, 570, 797, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 63, 151, 334, 653, 1203
HpyF3I CTNAG 8 cut(s) 133, 155, 648, 765, 836, 870, 1135, 1157
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 2 cut(s) 66, 97
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 215, 717
Kzo9I GATC 4 cut(s) 340, 592, 1069, 1369
LmnI GCTCC 2 cut(s) 395, 1057
Lsp1109I GCAGC 4 cut(s) 35, 215, 781, 1229
LweI GCATC 5 cut(s) 22, 523, 781, 806, 822
MaeI CTAG 5 cut(s) 329, 705, 773, 1283, 1335
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 4 cut(s) 168, 737, 1000, 1148
MalI GATC 4 cut(s) 342, 594, 1071, 1371
MboI GATC 4 cut(s) 340, 592, 1069, 1369
MboII GAAGA 5 cut(s) 509, 854, 943, 1254, 1364
MflI RGATCY 1 cut(s) 1369
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 3 cut(s) 192, 465, 1308
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 951, 1057
MroI TCCGGA 2 cut(s) 215, 717
MseI TTAA 4 cut(s) 84, 531, 816, 1251
MspA1I CMGCKG 2 cut(s) 180, 1022
MspI CCGG 6 cut(s) 216, 389, 405, 718, 1191, 1416
MspR9I CCNGG 6 cut(s) 209, 389, 390, 522, 1365, 1416
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 3 cut(s) 209, 522, 1365
MwoI GCNNNNNNNGC 6 cut(s) 32, 63, 151, 334, 653, 1203
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 3 cut(s) 389, 390, 1416
NdeII GATC 4 cut(s) 340, 592, 1069, 1369
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 2 cut(s) 67, 882
NmuCI GTSAC 4 cut(s) 168, 737, 1000, 1148
PceI AGGCCT 1 cut(s) 525
PctI GAATGC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 551, 804
PflMI CCANNNNNTGG 1 cut(s) 628
PinAI ACCGGT 1 cut(s) 1190
PkrI GCNGC 4 cut(s) 25, 230, 796, 1244
PleI GAGTC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 1251
Psp6I CCWGG 3 cut(s) 207, 520, 1363
PspEI GGTNACC 2 cut(s) 168, 1148
PspFI CCCAGC 2 cut(s) 164, 276
PspGI CCWGG 3 cut(s) 207, 520, 1363
PspN4I GGNNCC 2 cut(s) 67, 882
PspPI GGNCC 4 cut(s) 182, 274, 692, 1115
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 1369
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 4 cut(s) 673, 857, 903, 1036
RsaNI GTAC 4 cut(s) 672, 856, 902, 1035
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 84, 531, 816, 1251
SatI GCNGC 4 cut(s) 24, 229, 795, 1243
Sau3AI GATC 4 cut(s) 340, 592, 1069, 1369
Sau96I GGNCC 4 cut(s) 182, 274, 692, 1115
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 6 cut(s) 209, 389, 390, 522, 1365, 1416
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 5 cut(s) 22, 523, 781, 806, 822
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 3 cut(s) 182, 692, 1115
SmaI CCCGGG 1 cut(s) 390
SmlI CTYRAG 3 cut(s) 742, 1009, 1382
SmoI CTYRAG 3 cut(s) 742, 1009, 1382
SpeI ACTAGT 1 cut(s) 1334
Sse9I AATT 3 cut(s) 192, 465, 1308
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 2 cut(s) 180, 1305
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 5 cut(s) 329, 705, 773, 1283, 1335
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 6 cut(s) 207, 387, 388, 520, 1363, 1414
TaaI ACNGT 1 cut(s) 901
TaiI ACGT 1 cut(s) 291
TaqI TCGA 4 cut(s) 14, 190, 640, 730
TasI AATT 3 cut(s) 192, 465, 1308
TatI WGTACW 3 cut(s) 855, 901, 1034
TfiI GAWTC 2 cut(s) 551, 804
Tru1I TTAA 4 cut(s) 84, 531, 816, 1251
Tru9I TTAA 4 cut(s) 84, 531, 816, 1251
TscAI CASTG 3 cut(s) 239, 1132, 1236
TseFI GTSAC 4 cut(s) 168, 737, 1000, 1148
TseI GCWGC 4 cut(s) 23, 228, 794, 1242
Tsp45I GTSAC 4 cut(s) 168, 737, 1000, 1148
TspDTI ATGAA 6 cut(s) 17, 258, 655, 877, 930, 1419
TspGWI ACGGA 1 cut(s) 447
TspMI CCCGGG 1 cut(s) 388
TspRI CASTG 3 cut(s) 239, 1132, 1236
Van91I CCANNNNNTGG 1 cut(s) 628
VpaK11BI GGWCC 3 cut(s) 182, 692, 1115
VspI ATTAAT 1 cut(s) 1251
XapI RAATTY 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 5 cut(s) 329, 705, 773, 1283, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.