RchiOBHm_Chr7g0177111

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
212884 .. 218066
5183 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15776

Sequence Viewer

Length: 1404 bp
ATGCTCAGTGAAGCCCTCAGTTGCCCCCCCCCCCCCCCCCCCCCCCCCTCATTGCTAAGTGTGGCTGGGTCCCCCATCAGTGGGCCTAATCGAATTGAGTCTCTAACCCAGGTCTCAGGAGTTTTCGGGTGCCAGTGGGGTGATGAAGGTAAAGGTAAACTCGTTGACATCTTGGCCGAGCACTTTGACATTGTTGCTCGTTGTCAGGGAGGAGCTAATGCTGGACACACCATTTACAATGCAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTCAATGAGGATACTCTCTGTGTTATAGGGAATGGTGTTGTGGTGCATCTTCCGGGCCTCTTTAAAGAGGTTGATGGCCTCGAATCTAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGCAGTGGATGGGCTTCGAGAATCTGAGCTTGCTAAATCTTTCATTGGTACTACCAAGAGAGGCATTGGACCTTGTTACTCTAGCAAGGTTATCCGGAATGGCATTCGAGTTGGTGACTTGAGGCACATGGATACTTTACCTCAGAAGCTAGATCTTCTGTTGTCAGATGCTGCATCAAGATTCAAAGATTTTGAGTATGGCCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGTTTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACGTACCCCTTTGTCACTTCCTCAAGTCCTTTAGCTGGTGGGATTTGTACCGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCCCAACTACTGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCCGCAATTCAGTTGGGTGTCGCCTACAAAACTAGTGACGGCACACCAATCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGAAGGTGAAATATGAAGTATTGCCCGGATGGAATACTGACATCTCTAATGTAAGGAGCTACTCTGAACTTCCAAAGGCTGCACGTCAGTACGTGGAAAGAATAGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCGGGCCTGGACGTAGGCCTGGCAATTCAGCCCATGACTCGTTAACCGCCCATTAA

Protein Analysis

467

Amino Acids

50.39

Weight (kDa)

6.24

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 41 - 455 1.1e-174 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccB7I CCANNNNNTGG 2 cut(s) 445, 1007
AccIII TCCGGA 1 cut(s) 534
AciI CCGC 2 cut(s) 1122, 1395
AcoI YGGCCR 1 cut(s) 174
AfaI GTAC 7 cut(s) 490, 674, 720, 809, 853, 1298, 1329
AfiI CCNNNNNNNGG 5 cut(s) 80, 81, 445, 839, 1007
AgeI ACCGGT 1 cut(s) 854
AgsI TTSAA 2 cut(s) 625, 767
AhlI ACTAGT 1 cut(s) 1151
AjiI CACGTC 1 cut(s) 1292
AjnI CCWGG 4 cut(s) 108, 1180, 1354, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 1305, 1337
AluBI AGCT 5 cut(s) 215, 469, 589, 839, 1266
AluI AGCT 5 cut(s) 215, 469, 589, 839, 1266
Alw21I GWGCWC 2 cut(s) 183, 418
Alw26I GTCTC 3 cut(s) 105, 118, 409
AlwNI CAGNNNCTG 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 534
AoxI GGCC 8 cut(s) 83, 174, 340, 361, 640, 997, 1352, 1364
ApeKI GCWGC 3 cut(s) 611, 1059, 1286
AseI ATTAAT 1 cut(s) 1068
AsiGI ACCGGT 1 cut(s) 854
AspS9I GGNCC 8 cut(s) 69, 83, 340, 509, 641, 932, 998, 1352
AsuC2I CCSGG 2 cut(s) 339, 1233
AsuHPI GGTGA 9 cut(s) 152, 257, 410, 566, 896, 913, 977, 1084, 1225
AvaII GGWCC 3 cut(s) 69, 509, 932
AxyI CCTNAGG 1 cut(s) 277
BanI GGYRCC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 183, 418
BbvI GCAGC 3 cut(s) 598, 1046, 1273
BccI CCATC 5 cut(s) 83, 353, 443, 746, 1230
BceAI ACGGC 1 cut(s) 1174
BciT130I CCWGG 4 cut(s) 110, 1182, 1356, 1368
BciVI GTATCC 2 cut(s) 289, 565
BcnI CCSGG 2 cut(s) 339, 1233
BcoDI GTCTC 3 cut(s) 105, 118, 409
BcuI ACTAGT 1 cut(s) 1151
BfaI CTAG 4 cut(s) 522, 590, 1100, 1152
BfuI GTATCC 2 cut(s) 289, 565
BglII AGATCT 2 cut(s) 592, 1186
BisI GCNGC 3 cut(s) 612, 1060, 1287
BlsI GCNGC 3 cut(s) 613, 1061, 1288
Bme1390I CCNGG 6 cut(s) 110, 339, 1182, 1233, 1356, 1368
Bme18I GGWCC 3 cut(s) 69, 509, 932
BmgBI CACGTC 1 cut(s) 1292
BmgT120I GGNCC 8 cut(s) 69, 83, 340, 509, 641, 932, 998, 1352
BmiI GGNNCC 5 cut(s) 70, 71, 131, 643, 699
BmrFI CCNGG 6 cut(s) 110, 339, 1182, 1233, 1356, 1368
BmsI GCATC 4 cut(s) 340, 598, 623, 639
BpmI CTGGAG 1 cut(s) 1203
BpuEI CTTGAG 3 cut(s) 580, 811, 1220
BpuMI CCSGG 2 cut(s) 339, 1233
BsaAI YACGTR 1 cut(s) 1300
BsaI GGTCTC 2 cut(s) 118, 409
BsaJI CCNNGG 2 cut(s) 108, 1180
BsaWI WCCGGW 2 cut(s) 534, 854
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 81, 445, 839, 1007
Bse118I RCCGGY 1 cut(s) 854
Bse1I ACTGG 2 cut(s) 133, 1012
Bse21I CCTNAGG 1 cut(s) 277
Bse3DI GCAATG 3 cut(s) 50, 705, 864
BseAI TCCGGA 1 cut(s) 534
BseBI CCWGG 4 cut(s) 110, 1182, 1356, 1368
BseDI CCNNGG 2 cut(s) 108, 1180
BseGI GGATG 2 cut(s) 454, 1241
BseLI CCNNNNNNNGG 5 cut(s) 80, 81, 445, 839, 1007
BseMI GCAATG 3 cut(s) 50, 705, 864
BseMII CTCAG 8 cut(s) 19, 31, 129, 291, 456, 596, 678, 735
BseNI ACTGG 2 cut(s) 133, 1012
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 3 cut(s) 598, 1046, 1273
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 1272
BshFI GGCC 8 cut(s) 85, 176, 342, 363, 642, 999, 1354, 1366
BshNI GGYRCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 854
BsiHKAI GWGCWC 2 cut(s) 183, 418
BsiSI CCGG 4 cut(s) 338, 535, 855, 1233
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 5 cut(s) 80, 81, 445, 839, 1007
BsmAI GTCTC 3 cut(s) 105, 118, 409
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 8 cut(s) 85, 176, 342, 363, 642, 999, 1354, 1366
Bso31I GGTCTC 2 cut(s) 118, 409
Bsp1286I GDGCHC 2 cut(s) 183, 418
Bsp13I TCCGGA 1 cut(s) 534
Bsp143I GATC 4 cut(s) 409, 592, 886, 1186
BspACI CCGC 2 cut(s) 1122, 1395
BspANI GGCC 8 cut(s) 85, 176, 342, 363, 642, 999, 1354, 1366
BspCNI CTCAG 8 cut(s) 18, 30, 128, 290, 457, 595, 679, 736
BspEI TCCGGA 1 cut(s) 534
BspLI GGNNCC 5 cut(s) 70, 71, 131, 643, 699
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 2 cut(s) 118, 409
BsrDI GCAATG 3 cut(s) 50, 705, 864
BsrFI RCCGGY 1 cut(s) 854
BsrI ACTGG 2 cut(s) 133, 1012
BssAI RCCGGY 1 cut(s) 854
BssECI CCNNGG 2 cut(s) 108, 1180
BssMI GATC 4 cut(s) 409, 592, 886, 1186
Bst2UI CCWGG 4 cut(s) 110, 1182, 1356, 1368
Bst4CI ACNGT 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 1300
BstC8I GCNNGC 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 965
BstF5I GGATG 2 cut(s) 454, 1241
BstKTI GATC 4 cut(s) 412, 595, 889, 1189
BstMAI GTCTC 3 cut(s) 105, 118, 409
BstMBI GATC 4 cut(s) 409, 592, 886, 1186
BstMWI GCNNNNNNNGC 1 cut(s) 1020
BstNI CCWGG 4 cut(s) 110, 1182, 1356, 1368
BstPI GGTNACC 1 cut(s) 965
BstSCI CCNGG 6 cut(s) 108, 337, 1180, 1231, 1354, 1366
BstV1I GCAGC 3 cut(s) 598, 1046, 1273
BstX2I RGATCY 2 cut(s) 592, 1186
BstXI CCANNNNNNTGG 2 cut(s) 1070, 1343
BstYI RGATCY 2 cut(s) 592, 1186
Bsu36I CCTNAGG 1 cut(s) 277
BsuI GTATCC 2 cut(s) 289, 565
BsuRI GGCC 8 cut(s) 85, 176, 342, 363, 642, 999, 1354, 1366
BtrI CACGTC 1 cut(s) 1292
BtsCI GGATG 2 cut(s) 454, 1241
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 5 cut(s) 13, 85, 140, 450, 1046
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 854
Cfr13I GGNCC 8 cut(s) 69, 83, 340, 509, 641, 932, 998, 1352
Csp6I GTAC 7 cut(s) 489, 673, 719, 808, 852, 1297, 1328
CspAI ACCGGT 1 cut(s) 854
CviAII CATG 2 cut(s) 568, 1382
CviQI GTAC 7 cut(s) 489, 673, 719, 808, 852, 1297, 1328
DpnI GATC 4 cut(s) 411, 594, 888, 1188
DpnII GATC 4 cut(s) 409, 592, 886, 1186
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 1366
Eco31I GGTCTC 2 cut(s) 118, 409
Eco47I GGWCC 3 cut(s) 69, 509, 932
Eco81I CCTNAGG 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 965
EcoO109I RGGNCCY 1 cut(s) 69
EcoO65I GGTNACC 1 cut(s) 965
EcoRII CCWGG 4 cut(s) 108, 1180, 1354, 1366
FaeI CATG 2 cut(s) 571, 1385
FaiI YATR 7 cut(s) 311, 569, 639, 910, 1040, 1221, 1383
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 567, 1381
FauI CCCGC 1 cut(s) 1129
Fnu4HI GCNGC 3 cut(s) 612, 1060, 1287
FokI GGATG 2 cut(s) 461, 1248
Fsp4HI GCNGC 3 cut(s) 612, 1060, 1287
FspBI CTAG 4 cut(s) 522, 590, 1100, 1152
GluI GCNGC 3 cut(s) 612, 1060, 1287
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 8 cut(s) 85, 176, 342, 363, 642, 999, 1354, 1366
HapII CCGG 4 cut(s) 338, 535, 855, 1233
Hin1II CATG 2 cut(s) 571, 1385
HincII GTYRAC 2 cut(s) 166, 1392
HindII GTYRAC 2 cut(s) 166, 1392
HinfI GANTC 5 cut(s) 98, 368, 461, 621, 1385
HpaI GTTAAC 1 cut(s) 1392
HpaII CCGG 4 cut(s) 338, 535, 855, 1233
HphI GGTGA 9 cut(s) 152, 257, 410, 566, 896, 913, 977, 1084, 1225
Hpy166II GTNNAC 4 cut(s) 158, 166, 1328, 1392
Hpy188I TCNGA 7 cut(s) 409, 466, 585, 607, 745, 1114, 1273
Hpy188III TCNNGA 6 cut(s) 117, 458, 535, 618, 989, 1199
Hpy8I GTNNAC 4 cut(s) 158, 166, 1328, 1392
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 8 cut(s) 140, 239, 387, 712, 761, 980, 1204, 1205
HpyCH4III ACNGT 1 cut(s) 718
HpyCH4IV ACGT 4 cut(s) 806, 1291, 1299, 1360
HpyCH4V TGCA 7 cut(s) 242, 260, 331, 387, 614, 982, 1289
HpyF10VI GCNNNNNNNGC 1 cut(s) 1020
HpySE526I ACGT 4 cut(s) 806, 1291, 1299, 1360
Hsp92II CATG 2 cut(s) 571, 1385
KflI GGGWCCC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 534
KspAI GTTAAC 1 cut(s) 1392
Kzo9I GATC 4 cut(s) 409, 592, 886, 1186
LmnI GCTCC 3 cut(s) 212, 874, 1263
Lsp1109I GCAGC 3 cut(s) 598, 1046, 1273
LweI GCATC 4 cut(s) 340, 598, 623, 639
MaeI CTAG 4 cut(s) 522, 590, 1100, 1152
MaeII ACGT 4 cut(s) 806, 1291, 1299, 1360
MaeIII GTNAC 5 cut(s) 515, 554, 817, 965, 1154
MalI GATC 4 cut(s) 411, 594, 888, 1188
MboI GATC 4 cut(s) 409, 592, 886, 1186
MboII GAAGA 7 cut(s) 326, 587, 671, 760, 1071, 1181, 1325
MflI RGATCY 2 cut(s) 592, 1186
MhlI GDGCHC 2 cut(s) 183, 418
MluCI AATT 3 cut(s) 93, 1125, 1372
MlyI GAGTC 2 cut(s) 107, 1379
MmeI TCCRAC 2 cut(s) 768, 874
MroI TCCGGA 1 cut(s) 534
MseI TTAA 4 cut(s) 348, 1068, 1391, 1402
MspI CCGG 4 cut(s) 338, 535, 855, 1233
MspR9I CCNGG 6 cut(s) 110, 339, 1182, 1233, 1356, 1368
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 4 cut(s) 110, 1182, 1356, 1368
MwoI GCNNNNNNNGC 1 cut(s) 1020
NciI CCSGG 2 cut(s) 339, 1233
NdeII GATC 4 cut(s) 409, 592, 886, 1186
NlaIII CATG 2 cut(s) 571, 1385
NlaIV GGNNCC 5 cut(s) 70, 71, 131, 643, 699
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 4 cut(s) 554, 817, 965, 1154
PceI AGGCCT 1 cut(s) 1366
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 368, 461, 621
PflMI CCANNNNNTGG 2 cut(s) 445, 1007
PinAI ACCGGT 1 cut(s) 854
PkrI GCNGC 3 cut(s) 613, 1061, 1288
PleI GAGTC 2 cut(s) 106, 1379
PpsI GAGTC 2 cut(s) 106, 1379
Ppu21I YACGTR 1 cut(s) 1300
PpuMI RGGWCCY 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 1068
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 4 cut(s) 108, 1180, 1354, 1366
PspEI GGTNACC 1 cut(s) 965
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 4 cut(s) 108, 1180, 1354, 1366
PspN4I GGNNCC 5 cut(s) 70, 71, 131, 643, 699
PspPI GGNCC 8 cut(s) 69, 83, 340, 509, 641, 932, 998, 1352
PspPPI RGGWCCY 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 2 cut(s) 592, 1186
RsaI GTAC 7 cut(s) 490, 674, 720, 809, 853, 1298, 1329
RsaNI GTAC 7 cut(s) 489, 673, 719, 808, 852, 1297, 1328
SaqAI TTAA 4 cut(s) 348, 1068, 1391, 1402
SatI GCNGC 3 cut(s) 612, 1060, 1287
Sau3AI GATC 4 cut(s) 409, 592, 886, 1186
Sau96I GGNCC 8 cut(s) 69, 83, 340, 509, 641, 932, 998, 1352
SchI GAGTC 2 cut(s) 107, 1379
ScrFI CCNGG 6 cut(s) 110, 339, 1182, 1233, 1356, 1368
SduI GDGCHC 2 cut(s) 183, 418
SfaNI GCATC 4 cut(s) 340, 598, 623, 639
SinI GGWCC 3 cut(s) 69, 509, 932
SmlI CTYRAG 3 cut(s) 559, 826, 1199
SmoI CTYRAG 3 cut(s) 559, 826, 1199
SpeI ACTAGT 1 cut(s) 1151
Sse9I AATT 3 cut(s) 93, 1125, 1372
SseBI AGGCCT 1 cut(s) 1366
SsiI CCGC 2 cut(s) 1122, 1395
SspMI CTAG 4 cut(s) 522, 590, 1100, 1152
StuI AGGCCT 1 cut(s) 1366
StyD4I CCNGG 6 cut(s) 108, 337, 1180, 1231, 1354, 1366
TaaI ACNGT 1 cut(s) 718
TaiI ACGT 4 cut(s) 809, 1294, 1302, 1363
TaqI TCGA 4 cut(s) 91, 366, 457, 547
TasI AATT 3 cut(s) 93, 1125, 1372
TatI WGTACW 2 cut(s) 672, 718
TfiI GAWTC 3 cut(s) 368, 461, 621
Tru1I TTAA 4 cut(s) 348, 1068, 1391, 1402
Tru9I TTAA 4 cut(s) 348, 1068, 1391, 1402
TscAI CASTG 5 cut(s) 13, 85, 140, 450, 1053
TseFI GTSAC 4 cut(s) 554, 817, 965, 1154
TseI GCWGC 3 cut(s) 611, 1059, 1286
Tsp45I GTSAC 4 cut(s) 554, 817, 965, 1154
TspDTI ATGAA 5 cut(s) 159, 472, 694, 747, 1236
TspRI CASTG 5 cut(s) 13, 85, 140, 450, 1053
Van91I CCANNNNNTGG 2 cut(s) 445, 1007
VpaK11BI GGWCC 3 cut(s) 69, 509, 932
VspI ATTAAT 1 cut(s) 1068
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
XspI CTAG 4 cut(s) 522, 590, 1100, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.