Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012524.1

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1679

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1219 bp

atgaacaacctctcagcctttgcagcccttgatgccaacccactctccaaaacatgctatttgggcacccaccacaacaggtttaatctcctccagcgccccagaaatgtcgttgtatgctcagtgaagccctcagtcgcctccccctcatcgctaagtgtggctgggtcccctaacagtgggcctaatcgaattgagtctctaacccaggtctcaggagttttggggtgccagtggggtgatgaaggtaaaggcaaactcgttgacatcttggccgagcacttcgacattgttgctcgttgtcaaggaggagctaatgctggacacaccatttacagtgcagaaggaaagaagtttgcacttcaccttgttccctcaggtattctcaatgaggatactctctgtgttattgggaatggtgttgtggtgcatcttccgggcctctttaaagagattgatggcctcgaatccaatggagtgtcttgcaagggaaggatactggtctgtgatcgtgctcacctcttatttgatttccaccaagttgtggatgggcttcgagaatccgagcttgctaaatctttcattggtacaaccaagagaggcattggaccttgttactctagcaaggttatccgaaatggcattcgagttggtgacttgaggcacatggatactttacctcagaagctagatattctgttgtcagatgctgcatcaatattcaaaggttttgagtatggcccccagatgcttagagaagaagtagaaaagtacaagagatttgctgagagattggaacccttcattgctgatactgcaacaatgttggatattgactttggaacgtacccctttgtcacttcctcaagtccttcagctggtgggatttgtaccggtcttggcattgctcccagagttttaggtgatctcgttggagtggtgaaagcatacactacaagagttggttctggtcctttccccacagaaaacttaggtaaagagggtgaccttcttaggttgcaaggtcaggagtttggcacaactactggttgccctcgtcgttgtggttggcttgatatagtagcactgaaatactgttgccagattaatggcttttcttctctcaatctcaccaaaccagatgttttgtctgattttcctgcaattcagttgggtgtagcctacaaaactagtgacggcacaccaatcaaatcattcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

406

Amino Acids

43.6

Weight (kDa)

7.52

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 228
AccB7I	CCANNNNNTGG	1 cut(s)	544
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	4 cut(s)	589, 773, 848, 892
AfiI	CCNNNNNNNGG	3 cut(s)	179, 544, 878
AgeI	ACCGGT	1 cut(s)	893
AgsI	TTSAA	1 cut(s)	724
AhlI	ACTAGT	1 cut(s)	1190
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	314, 568, 688, 878
AluI	AGCT	4 cut(s)	314, 568, 688, 878
Alw21I	GWGCWC	2 cut(s)	282, 517
Alw26I	GTCTC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	5 cut(s)	182, 273, 439, 460, 739
ApeKI	GCWGC	2 cut(s)	23, 710
AseI	ATTAAT	1 cut(s)	1107
AsiGI	ACCGGT	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	6 cut(s)	168, 182, 439, 608, 740, 971
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	8 cut(s)	251, 356, 509, 665, 935, 952, 1016, 1123
AvaII	GGWCC	3 cut(s)	168, 608, 971
AxyI	CCTNAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	65, 228
Bbv12I	GWGCWC	2 cut(s)	282, 517
BbvI	GCAGC	2 cut(s)	35, 697
BccI	CCATC	2 cut(s)	452, 542
BceAI	ACGGC	1 cut(s)	1213
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	3 cut(s)	388, 489, 664
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	204, 217
BcuI	ACTAGT	1 cut(s)	1190
BfaI	CTAG	3 cut(s)	621, 689, 1191
BfoI	RGCGCY	1 cut(s)	100
BfuI	GTATCC	3 cut(s)	388, 489, 664
BisI	GCNGC	2 cut(s)	24, 711
BlsI	GCNGC	2 cut(s)	25, 712
Bme1390I	CCNGG	2 cut(s)	209, 438
Bme18I	GGWCC	3 cut(s)	168, 608, 971
BmgT120I	GGNCC	6 cut(s)	168, 182, 439, 608, 740, 971
BmiI	GGNNCC	6 cut(s)	67, 169, 170, 230, 742, 798
BmrFI	CCNGG	2 cut(s)	209, 438
BmsI	GCATC	5 cut(s)	22, 439, 697, 722, 738
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	679, 850
BpuMI	CCSGG	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	893
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 544, 878
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	3 cut(s)	232, 504, 1051
Bse21I	CCTNAGG	1 cut(s)	376
Bse3DI	GCAATG	2 cut(s)	804, 903
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	3 cut(s)	179, 544, 878
BseMI	GCAATG	2 cut(s)	804, 903
BseMII	CTCAG	7 cut(s)	27, 135, 147, 228, 390, 695, 777
BseNI	ACTGG	3 cut(s)	232, 504, 1051
BseRI	GAGGAG	2 cut(s)	80, 324
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	35, 697
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BshNI	GGYRCC	2 cut(s)	65, 228
BshTI	ACCGGT	1 cut(s)	893
BsiHKAI	GWGCWC	2 cut(s)	282, 517
BsiSI	CCGG	2 cut(s)	437, 894
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	179, 544, 878
BsmAI	GTCTC	2 cut(s)	204, 217
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	184, 275, 441, 462, 741
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	68, 282, 517
Bsp143I	GATC	2 cut(s)	508, 925
BspANI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BspCNI	CTCAG	7 cut(s)	26, 134, 146, 227, 389, 694, 778
BspLI	GGNNCC	6 cut(s)	67, 169, 170, 230, 742, 798
BspT107I	GGYRCC	2 cut(s)	65, 228
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	804, 903
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	3 cut(s)	232, 504, 1051
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	508, 925
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	179, 338, 1097
BstC8I	GCNNGC	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	1004
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	511, 928
BstMAI	GTCTC	2 cut(s)	204, 217
BstMBI	GATC	2 cut(s)	508, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 63, 815
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	2 cut(s)	207, 436
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	35, 697
BstXI	CCANNNNNNTGG	1 cut(s)	1109
Bsu36I	CCTNAGG	1 cut(s)	376
BsuI	GTATCC	3 cut(s)	388, 489, 664
BsuRI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	5 cut(s)	129, 184, 239, 343, 1085
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	6 cut(s)	168, 182, 439, 608, 740, 971
Csp6I	GTAC	4 cut(s)	588, 772, 847, 891
CspAI	ACCGGT	1 cut(s)	893
CviAII	CATG	2 cut(s)	54, 667
CviQI	GTAC	4 cut(s)	588, 772, 847, 891
DpnI	GATC	2 cut(s)	510, 927
DpnII	GATC	2 cut(s)	508, 925
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	168, 608, 971
Eco57I	CTGAAG	1 cut(s)	858
Eco81I	CCTNAGG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	1004
EcoO109I	RGGNCCY	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	57, 670
FaiI	YATR	6 cut(s)	55, 118, 668, 738, 949, 1079
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	53, 666
Fnu4HI	GCNGC	2 cut(s)	24, 711
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	24, 711
FspBI	CTAG	3 cut(s)	621, 689, 1191
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	24, 711
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	5 cut(s)	184, 275, 441, 462, 741
HapII	CCGG	2 cut(s)	437, 894
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	57, 670
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	197, 467, 560
HpaII	CCGG	2 cut(s)	437, 894
HphI	GGTGA	8 cut(s)	251, 356, 509, 665, 935, 952, 1016, 1123
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	565, 635, 684, 706, 1153
Hpy188III	TCNNGA	3 cut(s)	216, 557, 1028
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	1062
HpyAV	CCTTC	6 cut(s)	239, 338, 486, 811, 882, 1019
HpyCH4III	ACNGT	3 cut(s)	179, 338, 1097
HpyCH4IV	ACGT	1 cut(s)	845
HpyCH4V	TGCA	9 cut(s)	23, 341, 359, 430, 486, 713, 818, 1021, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 63, 815
HpySE526I	ACGT	1 cut(s)	845
Hsp92II	CATG	2 cut(s)	57, 670
HspAI	GCGC	1 cut(s)	97
KflI	GGGWCCC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	508, 925
LmnI	GCTCC	2 cut(s)	311, 913
Lsp1109I	GCAGC	2 cut(s)	35, 697
LweI	GCATC	5 cut(s)	22, 439, 697, 722, 738
MaeI	CTAG	3 cut(s)	621, 689, 1191
MaeII	ACGT	1 cut(s)	845
MaeIII	GTNAC	5 cut(s)	614, 653, 856, 1004, 1193
MalI	GATC	2 cut(s)	510, 927
MboI	GATC	2 cut(s)	508, 925
MboII	GAAGA	3 cut(s)	425, 770, 1110
MhlI	GDGCHC	3 cut(s)	68, 282, 517
MluCI	AATT	2 cut(s)	192, 1164
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	807, 913
MseI	TTAA	3 cut(s)	84, 447, 1107
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	437, 894
MspR9I	CCNGG	2 cut(s)	209, 438
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 63, 815
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	508, 925
NlaIII	CATG	2 cut(s)	57, 670
NlaIV	GGNNCC	6 cut(s)	67, 169, 170, 230, 742, 798
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	4 cut(s)	653, 856, 1004, 1193
NspI	RCATGY	1 cut(s)	57
PctI	GAATGC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	467, 560
PflMI	CCANNNNNTGG	1 cut(s)	544
PinAI	ACCGGT	1 cut(s)	893
PkrI	GCNGC	2 cut(s)	25, 712
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	1107
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	6 cut(s)	67, 169, 170, 230, 742, 798
PspPI	GGNCC	6 cut(s)	168, 182, 439, 608, 740, 971
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	4 cut(s)	589, 773, 848, 892
RsaNI	GTAC	4 cut(s)	588, 772, 847, 891
SaqAI	TTAA	3 cut(s)	84, 447, 1107
SatI	GCNGC	2 cut(s)	24, 711
Sau3AI	GATC	2 cut(s)	508, 925
Sau96I	GGNCC	6 cut(s)	168, 182, 439, 608, 740, 971
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	209, 438
SduI	GDGCHC	3 cut(s)	68, 282, 517
SfaNI	GCATC	5 cut(s)	22, 439, 697, 722, 738
SinI	GGWCC	3 cut(s)	168, 608, 971
SmlI	CTYRAG	2 cut(s)	658, 865
SmoI	CTYRAG	2 cut(s)	658, 865
SpeI	ACTAGT	1 cut(s)	1190
Sse9I	AATT	2 cut(s)	192, 1164
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	3 cut(s)	621, 689, 1191
StyD4I	CCNGG	2 cut(s)	207, 436
TaaI	ACNGT	3 cut(s)	179, 338, 1097
TaiI	ACGT	1 cut(s)	848
TaqI	TCGA	5 cut(s)	190, 285, 465, 556, 646
TasI	AATT	2 cut(s)	192, 1164
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	2 cut(s)	467, 560
Tru1I	TTAA	3 cut(s)	84, 447, 1107
Tru9I	TTAA	3 cut(s)	84, 447, 1107
TscAI	CASTG	5 cut(s)	129, 184, 239, 343, 1092
TseFI	GTSAC	4 cut(s)	653, 856, 1004, 1193
TseI	GCWGC	2 cut(s)	23, 710
Tsp45I	GTSAC	4 cut(s)	653, 856, 1004, 1193
TspDTI	ATGAA	4 cut(s)	17, 258, 571, 793
TspRI	CASTG	5 cut(s)	129, 184, 239, 343, 1092
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	168, 608, 971
VspI	ATTAAT	1 cut(s)	1107
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	3 cut(s)	621, 689, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.