Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

34429432 .. 34431031

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAACAACCTCTCATCTTTCACAGCCCTGGACTTCAATCCACTTTCCACCCCTTGTTCCTTTGGGACCCAACACCACAGGCCCGTTCTCCTCCAGCGCTCGAGAAATGCTGTCAGCTCAGTGAAGCCCTTGGTCGCCACCCCCTCTTCTCTAAGTTTGTCTGGGTCCCCCAGTCAGGGGCTTAATCGAATTGAGTCGCTAACCCAGGTCTCAGGTGTGTTGGGCTGCCAGTGGGGCGATGAAGGTAAAGGAAAACTCGTCGACATCTTAGCCCAACACTTTGACATCGTTGCTCGTTGTCAGGGTGGAGCTAATGCTGGACACACCATTTACAATGCAGAGGGGAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTTAATGAAGAATCTCTTTGTGTTATTGGAAATGGAGTTGTGGTGCATCTTCTAGGGCTCTTTAAAGAGATTGATGGCCTTGAATCTAATGGGGTATCCTGCAAGGGAAGGATATTGGTCTCTGATCGTGCACAACTCTTATTTGATTTCCACCAAATAGTGGATGGGCTTCGAGAATCTGAGCTTTCTGAATCTTTCATTGGCACTACCAAAAGAGGAATTGGGCCTTGTTACTCTAACAAGGTTATCCGAAATGGTATTCGAGTGAGTGACTTGAGGCACATGGATACTTTTCCTCTGAAGCTAGATGAACTATTATCAGATGCTGCATCAAGATTCCAAGGTTTTGACTATGGACCCCAAGTGCTAAAAGAAGAAGTTGAAAAGTACAAGAGATTTGCTGAGAGAATGGAACCCTTCATTGCTGATACTGTGCTTGTCGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTGGTCGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACTTATCCCTTTGTAACATCCTCTAGCCCTTCAGCCGGTGGGATTTGCACTGGTCTTGGCATTGCTCCCAGAATTTTAGGTGATCTGGTTGGAGTGGTAAAAGCATACACTACAAGAGTTGGTTCTGGTCCCTTTCCCACAGAAATCTTGGGCCAAGGGGGCGACCTCCTTAGGTCTGCTGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGTTGTGGTTGGCTTGATATAGCAGCACTGAAGTATTGCTGTCAGATCGATGGATTTTCTTCTCTCAATCTCACCAAACTTGATGTTTTGTCTGATCTGTCCCAAAATTCAGTTGGGTGTTGCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

415

Amino Acids

44.49

Weight (kDa)

6.27

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	972, 1222
AcuI	CTGAAG	3 cut(s)	701, 915, 1166
AfaI	GTAC	1 cut(s)	770
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	5 cut(s)	175, 176, 177, 541, 935
AgsI	TTSAA	3 cut(s)	37, 464, 764
AjnI	CCWGG	2 cut(s)	27, 204
AjuI	GAANNNNNNNTTGG	4 cut(s)	564, 596, 839, 871
AluBI	AGCT	4 cut(s)	117, 311, 565, 685
AluI	AGCT	4 cut(s)	117, 311, 565, 685
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	214, 505
Alw44I	GTGCAC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	4 cut(s)	80, 457, 605, 1051
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	3 cut(s)	225, 707, 1139
ApoI	RAATTY	2 cut(s)	972, 1222
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	7 cut(s)	66, 81, 165, 605, 737, 1028, 1051
AsuHPI	GGTGA	3 cut(s)	353, 992, 1180
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	4 cut(s)	66, 165, 737, 1028
AxyI	CCTNAGG	2 cut(s)	373, 1070
BaeGI	GKGCMC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	212, 694, 1151
BccI	CCATC	4 cut(s)	449, 539, 842, 1160
BciT130I	CCWGG	2 cut(s)	29, 206
BciVI	GTATCC	2 cut(s)	487, 661
BcoDI	GTCTC	2 cut(s)	214, 505
BfaI	CTAG	3 cut(s)	434, 686, 924
BfoI	RGCGCY	1 cut(s)	100
BfuI	GTATCC	2 cut(s)	487, 661
BglI	GCCNNNNNGGC	2 cut(s)	234, 1059
BisI	GCNGC	3 cut(s)	226, 708, 1140
BlsI	GCNGC	3 cut(s)	227, 709, 1141
Bme1390I	CCNGG	2 cut(s)	29, 206
Bme18I	GGWCC	4 cut(s)	66, 165, 737, 1028
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	7 cut(s)	66, 81, 165, 605, 737, 1028, 1051
BmiI	GGNNCC	7 cut(s)	67, 68, 166, 167, 739, 795, 1030
BmrFI	CCNGG	2 cut(s)	29, 206
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	3 cut(s)	436, 694, 719
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	676
Bsa29I	ATCGAT	1 cut(s)	1164
BsaI	GGTCTC	2 cut(s)	214, 505
BsaJI	CCNNGG	5 cut(s)	27, 129, 204, 721, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 176, 177, 541, 935
Bse118I	RCCGGY	1 cut(s)	935
Bse1I	ACTGG	4 cut(s)	171, 229, 955, 1108
Bse21I	CCTNAGG	2 cut(s)	373, 1070
Bse3DI	GCAATG	2 cut(s)	801, 960
BseBI	CCWGG	2 cut(s)	29, 206
BseCI	ATCGAT	1 cut(s)	1164
BseDI	CCNNGG	5 cut(s)	27, 129, 204, 721, 1054
BseGI	GGATG	2 cut(s)	550, 917
BseLI	CCNNNNNNNGG	5 cut(s)	175, 176, 177, 541, 935
BseMI	GCAATG	2 cut(s)	801, 960
BseMII	CTCAG	6 cut(s)	132, 225, 387, 552, 774, 831
BseNI	ACTGG	4 cut(s)	171, 229, 955, 1108
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	3 cut(s)	212, 694, 1151
BshFI	GGCC	4 cut(s)	82, 459, 607, 1053
BshVI	ATCGAT	1 cut(s)	1164
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	936
BslFI	GGGAC	4 cut(s)	79, 151, 1014, 1201
BslI	CCNNNNNNNGG	5 cut(s)	175, 176, 177, 541, 935
BsmAI	GTCTC	2 cut(s)	214, 505
BsmFI	GGGAC	4 cut(s)	79, 151, 1014, 1201
BsnI	GGCC	4 cut(s)	82, 459, 607, 1053
Bso31I	GGTCTC	2 cut(s)	214, 505
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	441, 514
Bsp143I	GATC	4 cut(s)	505, 982, 1161, 1210
BspANI	GGCC	4 cut(s)	82, 459, 607, 1053
BspCNI	CTCAG	6 cut(s)	131, 224, 386, 553, 775, 832
BspDI	ATCGAT	1 cut(s)	1164
BspLI	GGNNCC	7 cut(s)	67, 68, 166, 167, 739, 795, 1030
BspTNI	GGTCTC	2 cut(s)	214, 505
BsrDI	GCAATG	2 cut(s)	801, 960
BsrFI	RCCGGY	1 cut(s)	935
BsrI	ACTGG	4 cut(s)	171, 229, 955, 1108
BssAI	RCCGGY	1 cut(s)	935
BssECI	CCNNGG	5 cut(s)	27, 129, 204, 721, 1054
BssMI	GATC	4 cut(s)	505, 982, 1161, 1210
BssT1I	CCWWGG	3 cut(s)	129, 721, 1054
Bst2UI	CCWGG	2 cut(s)	29, 206
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	1 cut(s)	151
BstDEI	CTNAG	9 cut(s)	118, 152, 211, 268, 373, 561, 783, 840, 1070
BstF5I	GGATG	2 cut(s)	550, 917
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	4 cut(s)	508, 985, 1164, 1213
BstMAI	GTCTC	2 cut(s)	214, 505
BstMBI	GATC	4 cut(s)	505, 982, 1161, 1210
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 1059
BstNI	CCWGG	2 cut(s)	29, 206
BstSCI	CCNGG	2 cut(s)	27, 204
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	212, 694, 1151
Bsu15I	ATCGAT	1 cut(s)	1164
Bsu36I	CCTNAGG	2 cut(s)	373, 1070
BsuI	GTATCC	2 cut(s)	487, 661
BsuRI	GGCC	4 cut(s)	82, 459, 607, 1053
BsuTUI	ATCGAT	1 cut(s)	1164
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	550, 917
BtsIMutI	CAGTG	4 cut(s)	126, 236, 948, 1142
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	935
Cfr13I	GGNCC	7 cut(s)	66, 81, 165, 605, 737, 1028, 1051
ClaI	ATCGAT	1 cut(s)	1164
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	9 cut(s)	118, 152, 211, 268, 373, 561, 783, 840, 1070
DpnI	GATC	4 cut(s)	507, 984, 1163, 1212
DpnII	GATC	4 cut(s)	505, 982, 1161, 1210
DraI	TTTAAA	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	129, 721, 1054
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	2 cut(s)	214, 505
Eco47I	GGWCC	4 cut(s)	66, 165, 737, 1028
Eco47III	AGCGCT	1 cut(s)	98
Eco57I	CTGAAG	3 cut(s)	701, 915, 1166
Eco81I	CCTNAGG	2 cut(s)	373, 1070
Eco88I	CYCGRG	1 cut(s)	100
EcoO109I	RGGNCCY	2 cut(s)	66, 165
EcoRII	CCWGG	2 cut(s)	27, 204
EcoT14I	CCWWGG	3 cut(s)	129, 721, 1054
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	3 cut(s)	129, 721, 1054
FaeI	CATG	1 cut(s)	667
FaiI	YATR	5 cut(s)	665, 735, 1006, 1136, 1243
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	4 cut(s)	79, 151, 1014, 1201
FatI	CATG	1 cut(s)	663
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	226, 708, 1140
FokI	GGATG	2 cut(s)	557, 904
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	226, 708, 1140
FspBI	CTAG	3 cut(s)	434, 686, 924
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	3 cut(s)	226, 708, 1140
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	82, 459, 607, 1053
HapII	CCGG	1 cut(s)	936
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	6 cut(s)	194, 392, 464, 557, 572, 717
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	3 cut(s)	353, 992, 1180
Hpy166II	GTNNAC	2 cut(s)	262, 512
Hpy188I	TCNGA	9 cut(s)	505, 562, 571, 632, 681, 703, 841, 1161, 1210
Hpy188III	TCNNGA	5 cut(s)	102, 554, 714, 823, 1085
Hpy8I	GTNNAC	2 cut(s)	262, 512
Hpy99I	CGWCG	2 cut(s)	263, 1119
HpyAV	CCTTC	5 cut(s)	236, 483, 808, 857, 939
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4V	TGCA	7 cut(s)	338, 356, 427, 483, 512, 710, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 1059
HpyF3I	CTNAG	9 cut(s)	118, 152, 211, 268, 373, 561, 783, 840, 1070
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	1 cut(s)	97
KflI	GGGWCCC	2 cut(s)	66, 165
Kzo9I	GATC	4 cut(s)	505, 982, 1161, 1210
LmnI	GCTCC	2 cut(s)	308, 970
Lsp1109I	GCAGC	3 cut(s)	212, 694, 1151
LweI	GCATC	3 cut(s)	436, 694, 719
MaeI	CTAG	3 cut(s)	434, 686, 924
MaeIII	GTNAC	3 cut(s)	611, 650, 913
MalI	GATC	4 cut(s)	507, 984, 1163, 1212
MboI	GATC	4 cut(s)	505, 982, 1161, 1210
MboII	GAAGA	7 cut(s)	138, 358, 401, 422, 767, 856, 1167
MhlI	GDGCHC	2 cut(s)	441, 514
MluCI	AATT	4 cut(s)	189, 600, 972, 1222
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	864, 970
MseI	TTAA	3 cut(s)	183, 384, 444
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	2 cut(s)	29, 206
MvaI	CCWGG	2 cut(s)	29, 206
MwoI	GCNNNNNNNGC	2 cut(s)	234, 1059
NdeII	GATC	4 cut(s)	505, 982, 1161, 1210
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	7 cut(s)	67, 68, 166, 167, 739, 795, 1030
NmuCI	GTSAC	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	1114
PfeI	GAWTC	5 cut(s)	392, 464, 557, 572, 717
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	227, 709, 1141
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	2 cut(s)	66, 165
Psp5II	RGGWCCY	2 cut(s)	66, 165
Psp6I	CCWGG	2 cut(s)	27, 204
PspGI	CCWGG	2 cut(s)	27, 204
PspN4I	GGNNCC	7 cut(s)	67, 68, 166, 167, 739, 795, 1030
PspPI	GGNCC	7 cut(s)	66, 81, 165, 605, 737, 1028, 1051
PspPPI	RGGWCCY	2 cut(s)	66, 165
PstNI	CAGNNNCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	183, 384, 444
SatI	GCNGC	3 cut(s)	226, 708, 1140
Sau3AI	GATC	4 cut(s)	505, 982, 1161, 1210
Sau96I	GGNCC	7 cut(s)	66, 81, 165, 605, 737, 1028, 1051
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	29, 206
SduI	GDGCHC	2 cut(s)	441, 514
SfaNI	GCATC	3 cut(s)	436, 694, 719
Sfr274I	CTCGAG	1 cut(s)	100
SinI	GGWCC	4 cut(s)	66, 165, 737, 1028
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	2 cut(s)	100, 655
SmoI	CTYRAG	2 cut(s)	100, 655
Sse9I	AATT	4 cut(s)	189, 600, 972, 1222
SspMI	CTAG	3 cut(s)	434, 686, 924
StyD4I	CCNGG	2 cut(s)	27, 204
StyI	CCWWGG	3 cut(s)	129, 721, 1054
TaaI	ACNGT	1 cut(s)	814
TaqI	TCGA	7 cut(s)	101, 187, 261, 553, 643, 861, 1164
TasI	AATT	4 cut(s)	189, 600, 972, 1222
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	5 cut(s)	392, 464, 557, 572, 717
Tru1I	TTAA	3 cut(s)	183, 384, 444
Tru9I	TTAA	3 cut(s)	183, 384, 444
TscAI	CASTG	4 cut(s)	126, 236, 955, 1149
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	3 cut(s)	225, 707, 1139
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	7 cut(s)	17, 255, 402, 568, 705, 790, 843
TspRI	CASTG	4 cut(s)	126, 236, 955, 1149
Van91I	CCANNNNNTGG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	4 cut(s)	66, 165, 737, 1028
XapI	RAATTY	2 cut(s)	972, 1222
XcmI	CCANNNNNNNNNTGG	3 cut(s)	542, 1045, 1226
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	3 cut(s)	434, 686, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.