Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2911967 .. 2913343

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTGGATATTGACTTTGGAACGTACCCCTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACCGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCTGCAATTCAGTTGGGTGTAGCCTACAAAACTAGTGACGGCACACCAATCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGAAGGTGGAATATGAAGTATTGCCCGGATGGAATTCTGATATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAGGCTGCACGTCAGTACGTGGAAAGAATAGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCCGGCCTGGACGTGATGCCCTCATTTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

199

Amino Acids

21.67

Weight (kDa)

6.59

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adenylsucc_synt	PF00709	1 - 197	4.1e-84	Adenylosuccinate synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	4 cut(s)	26, 70, 515, 546
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	368
AjiI	CACGTC	2 cut(s)	509, 578
AjnI	CCWGG	2 cut(s)	397, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	2 cut(s)	56, 483
AluI	AGCT	2 cut(s)	56, 483
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	276, 503
ApoI	RAATTY	1 cut(s)	457
AseI	ATTAAT	1 cut(s)	285
AsiGI	ACCGGT	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	4 cut(s)	113, 130, 194, 301
AvaII	GGWCC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	263, 490
BccI	CCATC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	399, 573
BcnI	CCSGG	1 cut(s)	450
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	317, 369
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	277, 504
BlsI	GCNGC	2 cut(s)	278, 505
Bme1390I	CCNGG	3 cut(s)	399, 450, 573
Bme18I	GGWCC	1 cut(s)	149
BmgBI	CACGTC	2 cut(s)	509, 578
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	3 cut(s)	399, 450, 573
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	28, 437
BpuMI	CCSGG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	399, 573
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	263, 490
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	571
BshTI	ACCGGT	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	72, 450, 568
BslI	CCNNNNNNNGG	1 cut(s)	56
BsnI	GGCC	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	103, 403
BspANI	GGCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	103, 403
Bst2UI	CCWGG	2 cut(s)	399, 573
BstBAI	YACGTR	1 cut(s)	517
BstDEI	CTNAG	2 cut(s)	169, 191
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	2 cut(s)	106, 406
BstMBI	GATC	2 cut(s)	103, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	399, 573
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	397, 448, 571
BstV1I	GCAGC	2 cut(s)	263, 490
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	2 cut(s)	287, 560
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	571
BtrI	CACGTC	2 cut(s)	509, 578
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	4 cut(s)	25, 69, 514, 545
CspAI	ACCGGT	1 cut(s)	71
CviJI	RGCY	7 cut(s)	56, 250, 291, 359, 483, 503, 571
CviKI_1	RGCY	7 cut(s)	56, 250, 291, 359, 483, 503, 571
CviQI	GTAC	4 cut(s)	25, 69, 514, 545
DdeI	CTNAG	2 cut(s)	169, 191
DpnI	GATC	2 cut(s)	105, 405
DpnII	GATC	2 cut(s)	103, 403
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	397, 571
EcoRV	GATATC	1 cut(s)	466
FaiI	YATR	3 cut(s)	127, 257, 438
Fnu4HI	GCNGC	2 cut(s)	277, 504
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	277, 504
FspBI	CTAG	2 cut(s)	317, 369
GluI	GCNGC	2 cut(s)	277, 504
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	3 cut(s)	72, 450, 568
HpaII	CCGG	3 cut(s)	72, 450, 568
HphI	GGTGA	4 cut(s)	113, 130, 194, 301
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	331, 463, 490
Hpy188III	TCNNGA	2 cut(s)	206, 416
Hpy8I	GTNNAC	1 cut(s)	545
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	60, 197, 421, 422
HpyCH4IV	ACGT	4 cut(s)	23, 508, 516, 577
HpyCH4V	TGCA	3 cut(s)	199, 341, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	169, 191
HpySE526I	ACGT	4 cut(s)	23, 508, 516, 577
Kzo9I	GATC	2 cut(s)	103, 403
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	263, 490
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	317, 369
MaeII	ACGT	4 cut(s)	23, 508, 516, 577
MaeIII	GTNAC	3 cut(s)	34, 182, 371
MalI	GATC	2 cut(s)	105, 405
MboI	GATC	2 cut(s)	103, 403
MboII	GAAGA	3 cut(s)	288, 398, 542
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	2 cut(s)	342, 457
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	52, 172, 243, 596
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	3 cut(s)	72, 450, 568
MspR9I	CCNGG	3 cut(s)	399, 450, 573
MvaI	CCWGG	2 cut(s)	399, 573
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	103, 403
NmuCI	GTSAC	3 cut(s)	34, 182, 371
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	278, 505
Ppu21I	YACGTR	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	397, 571
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	397, 571
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	4 cut(s)	26, 70, 515, 546
RsaNI	GTAC	4 cut(s)	25, 69, 514, 545
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	277, 504
Sau3AI	GATC	2 cut(s)	103, 403
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	399, 450, 573
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	43, 416
SmoI	CTYRAG	2 cut(s)	43, 416
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	2 cut(s)	342, 457
SspMI	CTAG	2 cut(s)	317, 369
StyD4I	CCNGG	3 cut(s)	397, 448, 571
TaiI	ACGT	4 cut(s)	26, 511, 519, 580
TasI	AATT	2 cut(s)	342, 457
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	3 cut(s)	34, 182, 371
TseI	GCWGC	2 cut(s)	276, 503
Tsp45I	GTSAC	3 cut(s)	34, 182, 371
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	457
XspI	CTAG	2 cut(s)	317, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.