Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2913345 .. 2916163

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACAACCTCTCAGCCTTTGCAGCCCTTGATGCCAACCCACTCTCCAAAACATGCTATTTGGGCACCCACCACAACAGGTTTAATCTCCTCCAGCGCCCCAGAAATGTCGTTGTATGCTCAGTGAAGCCCTCAGTCGCCTCCCCCTCATCGCTAAGTGTGGCTGGGTCCCCTAACAGTGGGCCTAATCGAATTGAGTCTCTAACCCAGGTCTCAGGAGTTTTGGGGTGCCAGTGGGGTGATGAAGGTAAAGGCAAACTCGTTGACATCTTGGCCGAGCACTTTTACATTGTTGCTCATTGTCAGGGAGGAGCTAATGCTGGACACACCATTTACAATGCAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGTGTTGTGGTGCATCTTCTGGGCCTCTTTAAAGAGATTGATGGCCTCGAATCCAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGCTGTGGATGGGCTTCGAGAATCCGAGCTTGCTAAATCTTTCATTGGTACAACCAAGAGAGGCATTGGACCTTGTTACTCTAGCAAGGTTATCCGAAATGGCATTCGAGTTGGTGACTTGAGGCACATGGATACTTTACCTCAGAAGCTAGATATTCTGTTGTCAGATGCTGCATCAAGATTCAAAGGTTTTGAGTATGGCCCCCAGATGCGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

252

Amino Acids

27.09

Weight (kDa)

8.67

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adenylsucc_synt	PF00709	74 - 244	2.3e-67	Adenylosuccinate synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 228
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccII	CGCG	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	2 cut(s)	179, 544
AgsI	TTSAA	1 cut(s)	724
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	314, 542, 568, 688
AluI	AGCT	4 cut(s)	314, 542, 568, 688
Alw21I	GWGCWC	2 cut(s)	282, 517
Alw26I	GTCTC	3 cut(s)	204, 217, 508
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	5 cut(s)	182, 273, 439, 460, 739
ApeKI	GCWGC	2 cut(s)	23, 710
AspLEI	GCGC	3 cut(s)	99, 753, 755
AspS9I	GGNCC	5 cut(s)	168, 182, 439, 608, 740
AsuHPI	GGTGA	4 cut(s)	251, 356, 509, 665
AvaII	GGWCC	2 cut(s)	168, 608
AxyI	CCTNAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	65, 228
Bbv12I	GWGCWC	2 cut(s)	282, 517
BbvI	GCAGC	2 cut(s)	35, 697
BccI	CCATC	2 cut(s)	452, 542
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	2 cut(s)	388, 664
BcoDI	GTCTC	3 cut(s)	204, 217, 508
BfaI	CTAG	2 cut(s)	621, 689
BfoI	RGCGCY	1 cut(s)	100
BfuI	GTATCC	2 cut(s)	388, 664
BisI	GCNGC	2 cut(s)	24, 711
BlsI	GCNGC	2 cut(s)	25, 712
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	168, 608
BmgT120I	GGNCC	5 cut(s)	168, 182, 439, 608, 740
BmiI	GGNNCC	5 cut(s)	67, 169, 170, 230, 742
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	5 cut(s)	22, 439, 697, 722, 738
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	679
BsaI	GGTCTC	2 cut(s)	217, 508
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 544
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	179, 544
BseMII	CTCAG	6 cut(s)	27, 135, 147, 228, 390, 695
BseNI	ACTGG	1 cut(s)	232
BsePI	GCGCGC	1 cut(s)	751
BseRI	GAGGAG	2 cut(s)	80, 324
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	35, 697
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BshNI	GGYRCC	2 cut(s)	65, 228
BsiHKAI	GWGCWC	2 cut(s)	282, 517
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	179, 544
BsmAI	GTCTC	3 cut(s)	204, 217, 508
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	184, 275, 441, 462, 741
Bso31I	GGTCTC	2 cut(s)	217, 508
Bsp1286I	GDGCHC	3 cut(s)	68, 282, 517
Bsp143I	GATC	1 cut(s)	508
BspANI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BspCNI	CTCAG	6 cut(s)	26, 134, 146, 227, 389, 694
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	5 cut(s)	67, 169, 170, 230, 742
BspT107I	GGYRCC	2 cut(s)	65, 228
BspTNI	GGTCTC	2 cut(s)	217, 508
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	207
BssHII	GCGCGC	1 cut(s)	751
BssMI	GATC	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	570, 753
BstDEI	CTNAG	8 cut(s)	13, 121, 133, 155, 214, 376, 681, 756
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	753
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	99, 753, 755
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	3 cut(s)	204, 217, 508
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 63
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	35, 697
Bsu36I	CCTNAGG	1 cut(s)	376
BsuI	GTATCC	2 cut(s)	388, 664
BsuRI	GGCC	5 cut(s)	184, 275, 441, 462, 741
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	3 cut(s)	129, 184, 239
Cac8I	GCNNGC	2 cut(s)	570, 753
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	3 cut(s)	99, 753, 755
Cfr13I	GGNCC	5 cut(s)	168, 182, 439, 608, 740
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	2 cut(s)	54, 667
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	8 cut(s)	13, 121, 133, 155, 214, 376, 681, 756
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	273
Eco31I	GGTCTC	2 cut(s)	217, 508
Eco47I	GGWCC	2 cut(s)	168, 608
Eco81I	CCTNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	57, 670
FaiI	YATR	4 cut(s)	55, 118, 668, 738
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	53, 666
Fnu4HI	GCNGC	2 cut(s)	24, 711
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	24, 711
FspBI	CTAG	2 cut(s)	621, 689
GlaI	GCGC	3 cut(s)	98, 752, 754
GluI	GCNGC	2 cut(s)	24, 711
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	5 cut(s)	184, 275, 441, 462, 741
HhaI	GCGC	3 cut(s)	99, 753, 755
Hin1II	CATG	2 cut(s)	57, 670
Hin6I	GCGC	3 cut(s)	97, 751, 753
HinP1I	GCGC	3 cut(s)	97, 751, 753
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	4 cut(s)	197, 467, 560, 720
HphI	GGTGA	4 cut(s)	251, 356, 509, 665
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	508, 565, 635, 684, 706
Hpy188III	TCNNGA	3 cut(s)	216, 557, 717
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	239, 338, 486
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	6 cut(s)	23, 341, 359, 430, 486, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 63
HpyF3I	CTNAG	8 cut(s)	13, 121, 133, 155, 214, 376, 681, 756
Hsp92II	CATG	2 cut(s)	57, 670
HspAI	GCGC	3 cut(s)	97, 751, 753
KflI	GGGWCCC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	35, 697
LweI	GCATC	5 cut(s)	22, 439, 697, 722, 738
MaeI	CTAG	2 cut(s)	621, 689
MaeIII	GTNAC	2 cut(s)	614, 653
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	3 cut(s)	68, 282, 517
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	84, 447
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 63
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	57, 670
NlaIV	GGNNCC	5 cut(s)	67, 169, 170, 230, 742
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	1 cut(s)	57
PauI	GCGCGC	1 cut(s)	751
PctI	GAATGC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	467, 560, 720
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	2 cut(s)	25, 712
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	5 cut(s)	67, 169, 170, 230, 742
PspPI	GGNCC	5 cut(s)	168, 182, 439, 608, 740
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	710
PteI	GCGCGC	1 cut(s)	751
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	84, 447
SatI	GCNGC	2 cut(s)	24, 711
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	5 cut(s)	168, 182, 439, 608, 740
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	68, 282, 517
SfaNI	GCATC	5 cut(s)	22, 439, 697, 722, 738
SinI	GGWCC	2 cut(s)	168, 608
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	621, 689
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	190, 465, 556, 646
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	467, 560, 720
Tru1I	TTAA	2 cut(s)	84, 447
Tru9I	TTAA	2 cut(s)	84, 447
TscAI	CASTG	3 cut(s)	129, 184, 239
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	2 cut(s)	23, 710
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	17, 258, 571
TspRI	CASTG	3 cut(s)	129, 184, 239
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	168, 608
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	2 cut(s)	621, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.