Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

5061759 .. 5064420

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG037300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATACTTTACCTCAGAAGCTAGATATTCTGTTGTCAGATGCTGCATCAAGATTCAAAGGTTTTGAGTATGGCCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAAATTTGCTGAGAGATTGGAACCCTTCATTGCTAATACTTTACTTGTTGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACGTACCCCTTTGTCACTTCCTCAAGTCCTTCGGCTGGTGGGATTTGTACCGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATATACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCTGCAATTCAGTTGGGTGTAGCCTACAAAACTAGTGACGGCACACCAATCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGAAGGTGGAATATGAAGTATTGCCCGGATGGAATTCTGATATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAGGCTGCACGTCAGTACGTGGAAAGAATAGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCGGGCCTGGACGTGATGCCCTCATTTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

271

Amino Acids

29.74

Weight (kDa)

5.68

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adenylsucc_synt	PF00709	3 - 269	2.4e-102	Adenylosuccinate synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	113, 673
AfaI	GTAC	5 cut(s)	107, 242, 286, 731, 762
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	58, 200
AhlI	ACTAGT	1 cut(s)	584
AjiI	CACGTC	2 cut(s)	725, 794
AjnI	CCWGG	2 cut(s)	613, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	2 cut(s)	22, 699
AluI	AGCT	2 cut(s)	22, 699
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	73, 785
ApeKI	GCWGC	3 cut(s)	44, 492, 719
ApoI	RAATTY	2 cut(s)	113, 673
AseI	ATTAAT	1 cut(s)	501
AsiGI	ACCGGT	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	74, 365, 785
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	4 cut(s)	329, 346, 410, 517
AvaII	GGWCC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	31, 479, 706
BccI	CCATC	2 cut(s)	179, 663
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	615, 789
BcnI	CCSGG	1 cut(s)	666
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	3 cut(s)	23, 533, 585
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	45, 493, 720
BlsI	GCNGC	3 cut(s)	46, 494, 721
Bme1390I	CCNGG	3 cut(s)	615, 666, 789
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	2 cut(s)	725, 794
BmgT120I	GGNCC	3 cut(s)	74, 365, 785
BmiI	GGNNCC	2 cut(s)	76, 132
BmrFI	CCNGG	3 cut(s)	615, 666, 789
BmsI	GCATC	4 cut(s)	31, 56, 72, 787
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	244, 653
BpuMI	CCSGG	1 cut(s)	666
BsaAI	YACGTR	1 cut(s)	733
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	138, 297
BseBI	CCWGG	2 cut(s)	615, 789
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	2 cut(s)	138, 297
BseMII	CTCAG	3 cut(s)	29, 111, 168
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	31, 479, 706
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	2 cut(s)	75, 787
BshTI	ACCGGT	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	288, 666
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	2 cut(s)	75, 787
Bsp143I	GATC	2 cut(s)	319, 619
BspANI	GGCC	2 cut(s)	75, 787
BspCNI	CTCAG	3 cut(s)	28, 112, 169
BspLI	GGNNCC	2 cut(s)	76, 132
BsrDI	GCAATG	2 cut(s)	138, 297
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	2 cut(s)	319, 619
Bst2UI	CCWGG	2 cut(s)	615, 789
BstBAI	YACGTR	1 cut(s)	733
BstDEI	CTNAG	6 cut(s)	15, 86, 120, 177, 385, 407
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	674
BstKTI	GATC	2 cut(s)	322, 622
BstMBI	GATC	2 cut(s)	319, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	2 cut(s)	615, 789
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	613, 664, 787
BstV1I	GCAGC	3 cut(s)	31, 479, 706
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	2 cut(s)	503, 776
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	75, 787
BtrI	CACGTC	2 cut(s)	725, 794
BtsCI	GGATG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	479
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	74, 365, 785
Csp6I	GTAC	5 cut(s)	106, 241, 285, 730, 761
CspAI	ACCGGT	1 cut(s)	287
CviQI	GTAC	5 cut(s)	106, 241, 285, 730, 761
DdeI	CTNAG	6 cut(s)	15, 86, 120, 177, 385, 407
DpnI	GATC	2 cut(s)	321, 621
DpnII	GATC	2 cut(s)	319, 619
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	613, 787
EcoRV	GATATC	1 cut(s)	682
FaiI	YATR	5 cut(s)	72, 343, 345, 473, 654
Fnu4HI	GCNGC	3 cut(s)	45, 493, 720
FokI	GGATG	1 cut(s)	681
Fsp4HI	GCNGC	3 cut(s)	45, 493, 720
FspBI	CTAG	3 cut(s)	23, 533, 585
GluI	GCNGC	3 cut(s)	45, 493, 720
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	75, 787
HapII	CCGG	2 cut(s)	288, 666
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	2 cut(s)	288, 666
HphI	GGTGA	4 cut(s)	329, 346, 410, 517
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	6 cut(s)	18, 40, 178, 547, 679, 706
Hpy188III	TCNNGA	3 cut(s)	51, 422, 632
Hpy8I	GTNNAC	1 cut(s)	761
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	6 cut(s)	145, 194, 276, 413, 637, 638
HpyCH4IV	ACGT	4 cut(s)	239, 724, 732, 793
HpyCH4V	TGCA	4 cut(s)	47, 415, 557, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	6 cut(s)	15, 86, 120, 177, 385, 407
HpySE526I	ACGT	4 cut(s)	239, 724, 732, 793
Kzo9I	GATC	2 cut(s)	319, 619
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	3 cut(s)	31, 479, 706
LweI	GCATC	4 cut(s)	31, 56, 72, 787
MaeI	CTAG	3 cut(s)	23, 533, 585
MaeII	ACGT	4 cut(s)	239, 724, 732, 793
MaeIII	GTNAC	3 cut(s)	250, 398, 587
MalI	GATC	2 cut(s)	321, 621
MboI	GATC	2 cut(s)	319, 619
MboII	GAAGA	5 cut(s)	104, 193, 504, 614, 758
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	3 cut(s)	113, 558, 673
MmeI	TCCRAC	2 cut(s)	201, 307
MnlI	CCTC	5 cut(s)	24, 268, 388, 459, 812
MseI	TTAA	1 cut(s)	501
MspI	CCGG	2 cut(s)	288, 666
MspR9I	CCNGG	3 cut(s)	615, 666, 789
MvaI	CCWGG	2 cut(s)	615, 789
MwoI	GCNNNNNNNGC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	2 cut(s)	319, 619
NlaIV	GGNNCC	2 cut(s)	76, 132
NmuCI	GTSAC	3 cut(s)	250, 398, 587
PfeI	GAWTC	1 cut(s)	54
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	46, 494, 721
Ppu21I	YACGTR	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	613, 787
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	613, 787
PspN4I	GGNNCC	2 cut(s)	76, 132
PspPI	GGNCC	3 cut(s)	74, 365, 785
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	5 cut(s)	107, 242, 286, 731, 762
RsaNI	GTAC	5 cut(s)	106, 241, 285, 730, 761
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	3 cut(s)	45, 493, 720
Sau3AI	GATC	2 cut(s)	319, 619
Sau96I	GGNCC	3 cut(s)	74, 365, 785
ScrFI	CCNGG	3 cut(s)	615, 666, 789
SfaNI	GCATC	4 cut(s)	31, 56, 72, 787
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	259, 632
SmoI	CTYRAG	2 cut(s)	259, 632
SpeI	ACTAGT	1 cut(s)	584
Sse9I	AATT	3 cut(s)	113, 558, 673
SspMI	CTAG	3 cut(s)	23, 533, 585
StyD4I	CCNGG	3 cut(s)	613, 664, 787
TaiI	ACGT	4 cut(s)	242, 727, 735, 796
TasI	AATT	3 cut(s)	113, 558, 673
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	3 cut(s)	250, 398, 587
TseI	GCWGC	3 cut(s)	44, 492, 719
Tsp45I	GTSAC	3 cut(s)	250, 398, 587
TspDTI	ATGAA	3 cut(s)	127, 180, 669
TspRI	CASTG	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	2 cut(s)	113, 673
XspI	CTAG	3 cut(s)	23, 533, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.