Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

5161269 .. 5163368

Gene Structure 2100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCCTGAAGAGAATGTCTTGTGCTTCACCATGAACAACCTCTCAGCCTTTGCAGCCCTTGATGCCAACCCACTCTCCAAAACATGCTATTTGGGCACCCACCACAACAGGTTTAATCTCCTCCAGCGCCCCAGAAATGTTGTTGTATGCTCAGTGAAGCCCTCAGTCGCCTCCCCTTCATCGCTAAGTGTGGCTGGGTCTCAGGAGTTTTGGGGTGATGAAGGTAAAGGCAAACTCGTTGACATCTTGGCCGAGCACTTTGACATTGTTGCTCGTTGTCAGGGAGGAGCTAATGCTGGACACACCATTTACAATGCAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTCAATGAGGATACTCTCTGTGTATTGGGAATGATTGATGGCCTCGAATCTAATGGAGTGTCTTGCGAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGCAAAGCTAGATCTTCTGTTGTCAGATGCTGCATCAAGATTCAAAGGTTTTGAGTATGGCCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACGTACCCCTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACCGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCTGCAATTCAGTTGGGTGTAGCCTACAAAACTAGTGACGGCACACCAATCAAGTCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGAAGGTGGAATATGAAGTATTGCCCGGATGGAATTCTGATATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAGGTTGCACGTCAGTACGTGGAAAGAATAGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCGGGCCTGGACGTGATGCCCTCATTTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

426

Amino Acids

46.45

Weight (kDa)

5.72

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adenylsucc_synt	PF00709	66 - 161	1.5e-30	Adenylosuccinate synthetase
Adenylsucc_synt	PF00709	162 - 424	3.2e-101	Adenylosuccinate synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	1138
AcuI	CTGAAG	2 cut(s)	27, 717
AfaI	GTAC	6 cut(s)	572, 618, 707, 751, 1196, 1227
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgeI	ACCGGT	1 cut(s)	752
AgsI	TTSAA	2 cut(s)	523, 665
AhlI	ACTAGT	1 cut(s)	1049
AjiI	CACGTC	2 cut(s)	1190, 1259
AjnI	CCWGG	2 cut(s)	1078, 1252
AjuI	GAANNNNNNNTTGG	2 cut(s)	1203, 1235
AluBI	AGCT	4 cut(s)	290, 487, 737, 1164
AluI	AGCT	4 cut(s)	290, 487, 737, 1164
Alw21I	GWGCWC	2 cut(s)	258, 457
Alw26I	GTCTC	2 cut(s)	204, 448
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	4 cut(s)	249, 400, 538, 1250
ApeKI	GCWGC	3 cut(s)	53, 509, 957
ApoI	RAATTY	1 cut(s)	1138
AseI	ATTAAT	1 cut(s)	966
AsiGI	ACCGGT	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	539, 830, 1250
AsuC2I	CCSGG	1 cut(s)	1131
AsuHPI	GGTGA	8 cut(s)	19, 227, 332, 449, 794, 811, 875, 982
AvaII	GGWCC	1 cut(s)	830
AxyI	CCTNAGG	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	258, 457
BbvI	GCAGC	3 cut(s)	65, 496, 944
BccI	CCATC	3 cut(s)	392, 644, 1128
BceAI	ACGGC	1 cut(s)	1072
BciT130I	CCWGG	2 cut(s)	1080, 1254
BciVI	GTATCC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	1131
BcoDI	GTCTC	2 cut(s)	204, 448
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	3 cut(s)	488, 998, 1050
BfoI	RGCGCY	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	364
BglII	AGATCT	2 cut(s)	490, 1084
BisI	GCNGC	3 cut(s)	54, 510, 958
BlsI	GCNGC	3 cut(s)	55, 511, 959
Bme1390I	CCNGG	3 cut(s)	1080, 1131, 1254
Bme18I	GGWCC	1 cut(s)	830
BmgBI	CACGTC	2 cut(s)	1190, 1259
BmgT120I	GGNCC	3 cut(s)	539, 830, 1250
BmiI	GGNNCC	3 cut(s)	97, 541, 597
BmrFI	CCNGG	3 cut(s)	1080, 1131, 1254
BmsI	GCATC	5 cut(s)	52, 496, 521, 537, 1252
BpmI	CTGGAG	2 cut(s)	107, 1101
BpuEI	CTTGAG	2 cut(s)	709, 1118
BpuMI	CCSGG	1 cut(s)	1131
BsaAI	YACGTR	1 cut(s)	1198
BsaI	GGTCTC	2 cut(s)	204, 448
BsaJI	CCNNGG	1 cut(s)	1078
BsaWI	WCCGGW	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	910
Bse21I	CCTNAGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	603, 762
BseBI	CCWGG	2 cut(s)	1080, 1254
BseDI	CCNNGG	1 cut(s)	1078
BseGI	GGATG	1 cut(s)	1139
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	2 cut(s)	603, 762
BseMII	CTCAG	7 cut(s)	57, 165, 177, 215, 366, 576, 633
BseNI	ACTGG	1 cut(s)	910
BseRI	GAGGAG	2 cut(s)	110, 300
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	65, 496, 944
BseYI	CCCAGC	1 cut(s)	194
BshFI	GGCC	4 cut(s)	251, 402, 540, 1252
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	752
BsiHKAI	GWGCWC	2 cut(s)	258, 457
BsiSI	CCGG	2 cut(s)	753, 1131
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	204, 448
BsnI	GGCC	4 cut(s)	251, 402, 540, 1252
Bso31I	GGTCTC	2 cut(s)	204, 448
Bsp1286I	GDGCHC	3 cut(s)	98, 258, 457
Bsp143I	GATC	4 cut(s)	448, 490, 784, 1084
BspANI	GGCC	4 cut(s)	251, 402, 540, 1252
BspCNI	CTCAG	7 cut(s)	56, 164, 176, 214, 365, 577, 634
BspLI	GGNNCC	3 cut(s)	97, 541, 597
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	2 cut(s)	204, 448
BsrDI	GCAATG	2 cut(s)	603, 762
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	910
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	1 cut(s)	1078
BssMI	GATC	4 cut(s)	448, 490, 784, 1084
Bst2UI	CCWGG	2 cut(s)	1080, 1254
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	1198
BstEII	GGTNACC	1 cut(s)	863
BstF5I	GGATG	1 cut(s)	1139
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	451, 493, 787, 1087
BstMAI	GTCTC	2 cut(s)	204, 448
BstMBI	GATC	4 cut(s)	448, 490, 784, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 62, 93, 918
BstNI	CCWGG	2 cut(s)	1080, 1254
BstNSI	RCATGY	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	3 cut(s)	1078, 1129, 1252
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	65, 496, 944
BstX2I	RGATCY	2 cut(s)	490, 1084
BstXI	CCANNNNNNTGG	2 cut(s)	968, 1241
BstYI	RGATCY	2 cut(s)	490, 1084
Bsu36I	CCTNAGG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	251, 402, 540, 1252
BtgZI	GCGATG	1 cut(s)	165
BtrI	CACGTC	2 cut(s)	1190, 1259
BtsCI	GGATG	1 cut(s)	1139
BtsIMutI	CAGTG	2 cut(s)	159, 944
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	539, 830, 1250
Csp6I	GTAC	6 cut(s)	571, 617, 706, 750, 1195, 1226
CspAI	ACCGGT	1 cut(s)	752
CviAII	CATG	2 cut(s)	31, 84
CviQI	GTAC	6 cut(s)	571, 617, 706, 750, 1195, 1226
DpnI	GATC	4 cut(s)	450, 492, 786, 1086
DpnII	GATC	4 cut(s)	448, 490, 784, 1084
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	204, 448
Eco32I	GATATC	1 cut(s)	1147
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	27, 717
Eco81I	CCTNAGG	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	863
EcoO65I	GGTNACC	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	1138
EcoRII	CCWGG	2 cut(s)	1078, 1252
EcoRV	GATATC	1 cut(s)	1147
FaeI	CATG	2 cut(s)	34, 87
FaiI	YATR	7 cut(s)	32, 85, 148, 537, 808, 938, 1119
FatI	CATG	2 cut(s)	30, 83
Fnu4HI	GCNGC	3 cut(s)	54, 510, 958
FokI	GGATG	1 cut(s)	1146
Fsp4HI	GCNGC	3 cut(s)	54, 510, 958
FspBI	CTAG	3 cut(s)	488, 998, 1050
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	54, 510, 958
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	2 cut(s)	107, 1101
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	4 cut(s)	251, 402, 540, 1252
HapII	CCGG	2 cut(s)	753, 1131
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	34, 87
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	407, 519
HpaII	CCGG	2 cut(s)	753, 1131
HphI	GGTGA	8 cut(s)	19, 227, 332, 449, 794, 811, 875, 982
Hpy166II	GTNNAC	2 cut(s)	241, 1226
Hpy188I	TCNGA	6 cut(s)	448, 505, 643, 1012, 1144, 1171
Hpy188III	TCNNGA	4 cut(s)	203, 516, 887, 1097
Hpy8I	GTNNAC	2 cut(s)	241, 1226
Hpy99I	CGWCG	1 cut(s)	921
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	4 cut(s)	704, 1189, 1197, 1258
HpyCH4V	TGCA	7 cut(s)	53, 317, 335, 512, 880, 1022, 1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 62, 93, 918
HpySE526I	ACGT	4 cut(s)	704, 1189, 1197, 1258
Hsp92II	CATG	2 cut(s)	34, 87
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	448, 490, 784, 1084
LmnI	GCTCC	2 cut(s)	287, 772
Lsp1109I	GCAGC	3 cut(s)	65, 496, 944
LweI	GCATC	5 cut(s)	52, 496, 521, 537, 1252
MaeI	CTAG	3 cut(s)	488, 998, 1050
MaeII	ACGT	4 cut(s)	704, 1189, 1197, 1258
MaeIII	GTNAC	3 cut(s)	715, 863, 1052
MalI	GATC	4 cut(s)	450, 492, 786, 1086
MboI	GATC	4 cut(s)	448, 490, 784, 1084
MboII	GAAGA	7 cut(s)	20, 485, 569, 658, 969, 1079, 1223
MflI	RGATCY	2 cut(s)	490, 1084
MhlI	GDGCHC	3 cut(s)	98, 258, 457
MluCI	AATT	2 cut(s)	1023, 1138
MmeI	TCCRAC	2 cut(s)	666, 772
MseI	TTAA	2 cut(s)	114, 966
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	2 cut(s)	753, 1131
MspR9I	CCNGG	3 cut(s)	1080, 1131, 1254
MvaI	CCWGG	2 cut(s)	1080, 1254
MwoI	GCNNNNNNNGC	4 cut(s)	53, 62, 93, 918
NciI	CCSGG	1 cut(s)	1131
NdeII	GATC	4 cut(s)	448, 490, 784, 1084
NlaIII	CATG	2 cut(s)	34, 87
NlaIV	GGNNCC	3 cut(s)	97, 541, 597
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	3 cut(s)	715, 863, 1052
NspI	RCATGY	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	407, 519
PinAI	ACCGGT	1 cut(s)	752
PkrI	GCNGC	3 cut(s)	55, 511, 959
Ppu21I	YACGTR	1 cut(s)	1198
PshBI	ATTAAT	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	1078, 1252
PspEI	GGTNACC	1 cut(s)	863
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	1078, 1252
PspN4I	GGNNCC	3 cut(s)	97, 541, 597
PspPI	GGNCC	3 cut(s)	539, 830, 1250
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	2 cut(s)	490, 1084
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	6 cut(s)	572, 618, 707, 751, 1196, 1227
RsaNI	GTAC	6 cut(s)	571, 617, 706, 750, 1195, 1226
SaqAI	TTAA	2 cut(s)	114, 966
SatI	GCNGC	3 cut(s)	54, 510, 958
Sau3AI	GATC	4 cut(s)	448, 490, 784, 1084
Sau96I	GGNCC	3 cut(s)	539, 830, 1250
ScrFI	CCNGG	3 cut(s)	1080, 1131, 1254
SduI	GDGCHC	3 cut(s)	98, 258, 457
SfaNI	GCATC	5 cut(s)	52, 496, 521, 537, 1252
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	2 cut(s)	724, 1097
SmoI	CTYRAG	2 cut(s)	724, 1097
SpeI	ACTAGT	1 cut(s)	1049
Sse9I	AATT	2 cut(s)	1023, 1138
SspMI	CTAG	3 cut(s)	488, 998, 1050
StyD4I	CCNGG	3 cut(s)	1078, 1129, 1252
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	4 cut(s)	707, 1192, 1200, 1261
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	1023, 1138
TatI	WGTACW	2 cut(s)	570, 616
TfiI	GAWTC	2 cut(s)	407, 519
Tru1I	TTAA	2 cut(s)	114, 966
Tru9I	TTAA	2 cut(s)	114, 966
TscAI	CASTG	2 cut(s)	159, 951
TseFI	GTSAC	3 cut(s)	715, 863, 1052
TseI	GCWGC	3 cut(s)	53, 509, 957
Tsp45I	GTSAC	3 cut(s)	715, 863, 1052
TspDTI	ATGAA	6 cut(s)	47, 168, 234, 592, 645, 1134
TspRI	CASTG	2 cut(s)	159, 951
VpaK11BI	GGWCC	1 cut(s)	830
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	1 cut(s)	1138
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	3 cut(s)	488, 998, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.