MD15G1386600.v1.1

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
47792209 .. 47794893
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1386600.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGAACAACCTCTCATCTTTCACAGCCCTGGACTCCAATCCACTTTCCACCCCTTGTTCCTTTGGGGCCCAACACCACAGGCCCGTTCTCCTCCAGCGCTCGAGAAATACTGTCGTATGCTCAGTGAAGCCCTTGGTCGCCACCCCCTCTTCTCTAAGTTTGTCCGGTTCCCCCAATCAGGGGCTTAATCGAATTGAGTCGCTAACCCAGGTCTCAGGCGTGTTGGGCTGCCAGTGGGGCGATGAAGGTAAAGGAAAACTCGTCGACATCTTAGCCCAACACTTTGACATCGTTGCTCGTTGTCAGGGTGGAGCTAATGCTGGACACACCATTTACAACGCAGAGGGAAAGAAGTTTGCGCTTCACCTTGTTCCCTCAGGTATTCTTAATGAAGAAACTCTTTGTGTTATTGGAAATGGAGTTGTGGTGCATCTTCCAGGGCTCTTTAAAGAGATTGATGGCCTTGAATCTAATGGGGTATCCTGCAAGGGAAGGATATTGGTCTCTGATCGTGCACACCTCTTATTTGATTTCCATCAAATAGTGGATGGGCTTCGAGAATCTGAGCTTTCTGAATCTTTCATTGGCACTACCAAAAGAGGAATTGGGCCTTGTTACTCTAACAAGGTTATCCGAAATGGTATTCGAGTGAGTGACTTGAGGCACATGGATACTTTTCCTCAGAAGCTAGATGATCTATTATCAGATGCTGCATCAAGATTCCAAGGTTTTGAGTATGGACCCCATGTGCTAAAAGAAGAAGTTGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTGCATGTCGTGAATGAAGCCATCTCCGAGAAGAAAAAGATTTTGGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACTTATCCCTTTGTAACATCCTCTAGCCCTTCAGCGGGTGGGATTTGCACTGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTGGTTGGAGTGGTAAAGGCATACACTACGAGAGTTGGTTCTGGTCCCTTTCCCACAGAAATCTTGGGCCAAGGGGGCGACCTCCTTAGGTCTGCTGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGTTGTGGTTGGCTTGATATGGCAGCACTGAAGTATTGCTGTCAGATCAATGGATTTTCTTCTCTCAATCTCACCAAACTTGATGTTTTGTCTGATCTTCCCAAAATTCTGTTGGGTGTTGCCTATAAACAGAAGGATGGTACACCGATTAAATCGTTCCCTTCAGACCTTCGTGATCTTGAGCAATTAGAGGTGGACTATGAAGAATTGCCCGGATGGGAATCGGATATTTCTTCTGTCAGAAATTACTCCGACCTTCCGAAGGCCGCACGTCAATATGTGGAAACGATAGAAGAACTTCTTGGTGTACCCGTCCATTACATTGGTGTAGGGCCTGGACGCGATGCACTGATTTACAAATAG

Protein Analysis

494

Amino Acids

53.49

Weight (kDa)

5.99

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 74 - 491 4.1e-177 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 1461
AciI CCGC 2 cut(s) 938, 1386
AcsI RAATTY 1 cut(s) 1224
AcuI CTGAAG 3 cut(s) 918, 1169, 1266
AfaI GTAC 3 cut(s) 773, 1261, 1428
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 6 cut(s) 178, 179, 180, 937, 938, 1381
AgsI TTSAA 3 cut(s) 467, 767, 866
AjiI CACGTC 1 cut(s) 1391
AjnI CCWGG 4 cut(s) 27, 207, 436, 1453
AjuI GAANNNNNNNTTGG 6 cut(s) 567, 599, 842, 874, 1404, 1436
AluBI AGCT 3 cut(s) 314, 568, 688
AluI AGCT 3 cut(s) 314, 568, 688
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 217, 508
Alw44I GTGCAC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 7 cut(s) 66, 80, 460, 608, 1054, 1383, 1451
ApaI GGGCCC 1 cut(s) 70
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 3 cut(s) 228, 710, 1142
ApoI RAATTY 1 cut(s) 1224
Asp700I GAANNNNTTC 1 cut(s) 1416
AspLEI GCGC 2 cut(s) 99, 361
AspS9I GGNCC 8 cut(s) 66, 67, 81, 608, 740, 1031, 1054, 1451
AsuC2I CCSGG 1 cut(s) 1332
AsuHPI GGTGA 3 cut(s) 356, 995, 1183
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 740, 1031
AxyI CCTNAGG 2 cut(s) 376, 1073
BaeGI GKGCMC 2 cut(s) 70, 517
BanII GRGCYC 2 cut(s) 70, 444
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 215, 697, 1154
BccI CCATC 6 cut(s) 452, 542, 543, 845, 1250, 1329
BciT130I CCWGG 4 cut(s) 29, 209, 438, 1455
BciVI GTATCC 2 cut(s) 490, 664
BcnI CCSGG 1 cut(s) 1332
BcoDI GTCTC 2 cut(s) 217, 508
BfaI CTAG 2 cut(s) 689, 927
BfoI RGCGCY 1 cut(s) 100
BfuI GTATCC 2 cut(s) 490, 664
BglI GCCNNNNNGGC 2 cut(s) 237, 1062
BisI GCNGC 4 cut(s) 229, 711, 1143, 1386
BlsI GCNGC 4 cut(s) 230, 712, 1144, 1387
Bme1390I CCNGG 5 cut(s) 29, 209, 438, 1332, 1455
Bme18I GGWCC 2 cut(s) 740, 1031
BmeT110I CYCGRG 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 1391
BmgT120I GGNCC 8 cut(s) 66, 67, 81, 608, 740, 1031, 1054, 1451
BmiI GGNNCC 6 cut(s) 67, 68, 169, 742, 798, 1033
BmrFI CCNGG 5 cut(s) 29, 209, 438, 1332, 1455
BmsI GCATC 4 cut(s) 439, 697, 722, 1453
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 679, 1319
BpuMI CCSGG 1 cut(s) 1332
BsaBI GATNNNNATC 2 cut(s) 534, 1339
BsaI GGTCTC 2 cut(s) 217, 508
BsaJI CCNNGG 6 cut(s) 27, 132, 207, 437, 724, 1057
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 6 cut(s) 178, 179, 180, 937, 938, 1381
Bse1I ACTGG 3 cut(s) 232, 958, 1111
Bse21I CCTNAGG 2 cut(s) 376, 1073
Bse3DI GCAATG 2 cut(s) 804, 963
Bse8I GATNNNNATC 2 cut(s) 534, 1339
BseBI CCWGG 4 cut(s) 29, 209, 438, 1455
BseDI CCNNGG 6 cut(s) 27, 132, 207, 437, 724, 1057
BseGI GGATG 4 cut(s) 553, 920, 1261, 1340
BseJI GATNNNNATC 2 cut(s) 534, 1339
BseLI CCNNNNNNNGG 6 cut(s) 178, 179, 180, 937, 938, 1381
BseMI GCAATG 2 cut(s) 804, 963
BseMII CTCAG 6 cut(s) 135, 228, 390, 555, 695, 777
BseNI ACTGG 3 cut(s) 232, 958, 1111
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 2 cut(s) 70, 517
BseXI GCAGC 3 cut(s) 215, 697, 1154
Bsh1236I CGCG 1 cut(s) 1461
BshFI GGCC 7 cut(s) 68, 82, 462, 610, 1056, 1385, 1453
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 165, 1332
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 6 cut(s) 178, 179, 180, 937, 938, 1381
BsmAI GTCTC 2 cut(s) 217, 508
BsmFI GGGAC 1 cut(s) 1017
BsnI GGCC 7 cut(s) 68, 82, 462, 610, 1056, 1385, 1453
Bso31I GGTCTC 2 cut(s) 217, 508
BsoBI CYCGRG 1 cut(s) 100
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 70, 444, 517
Bsp143I GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
BspACI CCGC 2 cut(s) 938, 1386
BspANI GGCC 7 cut(s) 68, 82, 462, 610, 1056, 1385, 1453
BspCNI CTCAG 6 cut(s) 134, 227, 389, 556, 694, 778
BspFNI CGCG 1 cut(s) 1461
BspLI GGNNCC 6 cut(s) 67, 68, 169, 742, 798, 1033
BspTNI GGTCTC 2 cut(s) 217, 508
BsrDI GCAATG 2 cut(s) 804, 963
BsrI ACTGG 3 cut(s) 232, 958, 1111
BssECI CCNNGG 6 cut(s) 27, 132, 207, 437, 724, 1057
BssMI GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
BssT1I CCWWGG 3 cut(s) 132, 724, 1057
Bst2UI CCWGG 4 cut(s) 29, 209, 438, 1455
Bst4CI ACNGT 2 cut(s) 112, 817
Bst6I CTCTTC 1 cut(s) 154
BstDEI CTNAG 9 cut(s) 121, 155, 214, 271, 376, 564, 681, 786, 1073
BstENI CCTNNNNNAGG 1 cut(s) 1379
BstF5I GGATG 4 cut(s) 553, 920, 1261, 1340
BstFNI CGCG 1 cut(s) 1461
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 361
BstKTI GATC 6 cut(s) 511, 697, 988, 1167, 1216, 1297
BstMAI GTCTC 2 cut(s) 217, 508
BstMBI GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 225, 237, 1062
BstNI CCWGG 4 cut(s) 29, 209, 438, 1455
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 5 cut(s) 27, 207, 436, 1330, 1453
BstSLI GKGCMC 2 cut(s) 70, 517
BstUI CGCG 1 cut(s) 1461
BstV1I GCAGC 3 cut(s) 215, 697, 1154
BstXI CCANNNNNNTGG 1 cut(s) 1442
Bsu36I CCTNAGG 2 cut(s) 376, 1073
BsuI GTATCC 2 cut(s) 490, 664
BsuRI GGCC 7 cut(s) 68, 82, 462, 610, 1056, 1385, 1453
BtgZI GCGATG 2 cut(s) 255, 1476
BtrI CACGTC 1 cut(s) 1391
BtsCI GGATG 4 cut(s) 553, 920, 1261, 1340
BtsIMutI CAGTG 5 cut(s) 129, 239, 951, 1145, 1466
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 2 cut(s) 99, 361
Cfr13I GGNCC 8 cut(s) 66, 67, 81, 608, 740, 1031, 1054, 1451
CseI GACGC 1 cut(s) 1467
Csp6I GTAC 3 cut(s) 772, 1260, 1427
CviAII CATG 3 cut(s) 667, 746, 821
CviQI GTAC 3 cut(s) 772, 1260, 1427
DdeI CTNAG 9 cut(s) 121, 155, 214, 271, 376, 564, 681, 786, 1073
DpnI GATC 6 cut(s) 510, 696, 987, 1166, 1215, 1296
DpnII GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
DraI TTTAAA 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 3 cut(s) 132, 724, 1057
Eco24I GRGCYC 2 cut(s) 70, 444
Eco31I GGTCTC 2 cut(s) 217, 508
Eco47I GGWCC 2 cut(s) 740, 1031
Eco47III AGCGCT 1 cut(s) 98
Eco57I CTGAAG 3 cut(s) 918, 1169, 1266
Eco81I CCTNAGG 2 cut(s) 376, 1073
Eco88I CYCGRG 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 1379
EcoO109I RGGNCCY 2 cut(s) 66, 1451
EcoRII CCWGG 4 cut(s) 27, 207, 436, 1453
EcoT14I CCWWGG 3 cut(s) 132, 724, 1057
EcoT38I GRGCYC 2 cut(s) 70, 444
ErhI CCWWGG 3 cut(s) 132, 724, 1057
FaeI CATG 3 cut(s) 670, 749, 824
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 1404, 1436
FaqI GGGAC 1 cut(s) 1017
FatI CATG 3 cut(s) 666, 745, 820
FauI CCCGC 1 cut(s) 931
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 229, 711, 1143, 1386
FokI GGATG 4 cut(s) 560, 907, 1268, 1347
FriOI GRGCYC 2 cut(s) 70, 444
Fsp4HI GCNGC 4 cut(s) 229, 711, 1143, 1386
FspBI CTAG 2 cut(s) 689, 927
GlaI GCGC 2 cut(s) 98, 360
GluI GCNGC 4 cut(s) 229, 711, 1143, 1386
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 7 cut(s) 68, 82, 462, 610, 1056, 1385, 1453
HapII CCGG 2 cut(s) 165, 1332
HgaI GACGC 1 cut(s) 1467
HhaI GCGC 2 cut(s) 99, 361
Hin1II CATG 3 cut(s) 670, 749, 824
Hin6I GCGC 2 cut(s) 97, 359
HinP1I GCGC 2 cut(s) 97, 359
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 7 cut(s) 32, 197, 467, 560, 575, 720, 1340
HpaII CCGG 2 cut(s) 165, 1332
HphI GGTGA 3 cut(s) 356, 995, 1183
Hpy166II GTNNAC 5 cut(s) 265, 515, 1262, 1315, 1427
Hpy188III TCNNGA 7 cut(s) 102, 557, 717, 826, 1088, 1292, 1298
Hpy8I GTNNAC 5 cut(s) 265, 515, 1262, 1315, 1427
Hpy99I CGWCG 2 cut(s) 266, 1122
HpyCH4III ACNGT 2 cut(s) 112, 817
HpyCH4IV ACGT 1 cut(s) 1390
HpyCH4V TGCA 7 cut(s) 430, 486, 515, 713, 820, 951, 1466
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 237, 1062
HpyF3I CTNAG 9 cut(s) 121, 155, 214, 271, 376, 564, 681, 786, 1073
HpySE526I ACGT 1 cut(s) 1390
Hsp92II CATG 3 cut(s) 670, 749, 824
HspAI GCGC 2 cut(s) 97, 359
Kzo9I GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
LmnI GCTCC 2 cut(s) 311, 973
Lsp1109I GCAGC 3 cut(s) 215, 697, 1154
LweI GCATC 4 cut(s) 439, 697, 722, 1453
MaeI CTAG 2 cut(s) 689, 927
MaeII ACGT 1 cut(s) 1390
MaeIII GTNAC 3 cut(s) 614, 653, 916
MalI GATC 6 cut(s) 510, 696, 987, 1166, 1215, 1296
MboI GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
MhlI GDGCHC 3 cut(s) 70, 444, 517
MluCI AATT 6 cut(s) 192, 603, 1224, 1304, 1325, 1363
MlyI GAGTC 2 cut(s) 26, 206
MmeI TCCRAC 3 cut(s) 867, 973, 1395
MroXI GAANNNNTTC 1 cut(s) 1416
MseI TTAA 4 cut(s) 186, 387, 447, 1269
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 2 cut(s) 165, 1332
MspR9I CCNGG 5 cut(s) 29, 209, 438, 1332, 1455
MvaI CCWGG 4 cut(s) 29, 209, 438, 1455
MvnI CGCG 1 cut(s) 1461
MwoI GCNNNNNNNGC 3 cut(s) 225, 237, 1062
NciI CCSGG 1 cut(s) 1332
NdeII GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
NlaIII CATG 3 cut(s) 670, 749, 824
NlaIV GGNNCC 6 cut(s) 67, 68, 169, 742, 798, 1033
NmuCI GTSAC 1 cut(s) 653
NspI RCATGY 1 cut(s) 824
PaeR7I CTCGAG 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 1416
PfeI GAWTC 5 cut(s) 467, 560, 575, 720, 1340
PkrI GCNGC 4 cut(s) 230, 712, 1144, 1387
PleI GAGTC 2 cut(s) 26, 205
PpsI GAGTC 2 cut(s) 26, 205
Psp6I CCWGG 4 cut(s) 27, 207, 436, 1453
PspGI CCWGG 4 cut(s) 27, 207, 436, 1453
PspN4I GGNNCC 6 cut(s) 67, 68, 169, 742, 798, 1033
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 8 cut(s) 66, 67, 81, 608, 740, 1031, 1054, 1451
PstNI CAGNNNCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 773, 1261, 1428
RsaNI GTAC 3 cut(s) 772, 1260, 1427
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 4 cut(s) 186, 387, 447, 1269
SatI GCNGC 4 cut(s) 229, 711, 1143, 1386
Sau3AI GATC 6 cut(s) 508, 694, 985, 1164, 1213, 1294
Sau96I GGNCC 8 cut(s) 66, 67, 81, 608, 740, 1031, 1054, 1451
SchI GAGTC 2 cut(s) 26, 206
ScrFI CCNGG 5 cut(s) 29, 209, 438, 1332, 1455
SduI GDGCHC 3 cut(s) 70, 444, 517
SfaNI GCATC 4 cut(s) 439, 697, 722, 1453
Sfr274I CTCGAG 1 cut(s) 100
SinI GGWCC 2 cut(s) 740, 1031
SlaI CTCGAG 1 cut(s) 100
SmlI CTYRAG 3 cut(s) 100, 658, 1298
SmoI CTYRAG 3 cut(s) 100, 658, 1298
Sse9I AATT 6 cut(s) 192, 603, 1224, 1304, 1325, 1363
SsiI CCGC 2 cut(s) 938, 1386
SspMI CTAG 2 cut(s) 689, 927
StyD4I CCNGG 5 cut(s) 27, 207, 436, 1330, 1453
StyI CCWWGG 3 cut(s) 132, 724, 1057
TaaI ACNGT 2 cut(s) 112, 817
TaiI ACGT 1 cut(s) 1393
TaqI TCGA 5 cut(s) 101, 190, 264, 556, 646
TasI AATT 6 cut(s) 192, 603, 1224, 1304, 1325, 1363
TatI WGTACW 1 cut(s) 771
TauI GCSGC 1 cut(s) 1388
TfiI GAWTC 5 cut(s) 467, 560, 575, 720, 1340
Tru1I TTAA 4 cut(s) 186, 387, 447, 1269
Tru9I TTAA 4 cut(s) 186, 387, 447, 1269
TscAI CASTG 5 cut(s) 129, 239, 958, 1152, 1473
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 3 cut(s) 228, 710, 1142
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 7 cut(s) 17, 258, 405, 571, 793, 846, 1335
TspRI CASTG 5 cut(s) 129, 239, 958, 1152, 1473
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 740, 1031
XagI CCTNNNNNAGG 1 cut(s) 1379
XapI RAATTY 1 cut(s) 1224
XceI RCATGY 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 2 cut(s) 1048, 1228
XhoI CTCGAG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 1416
XspI CTAG 2 cut(s) 689, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.