FvH4_7g07940

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7879653 .. 7882802
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07940.t1

Sequence Viewer

Length: 1419 bp
ATGAACAACCTATCAACCTTCGCAGCCCTTGATGCCAACCCACTCTCCAAACCTTGCTACTTGGGCGCCCAACACAATAGGTTTAACCTCCTCCAGCGCCCCAGAAATGTTGTTGTATGCTCTGTGAAACCCTCAGTTGCCTCGCCCTCATCGCTAAGTGTGGCTGGGTCACCCAACAGCGGACCTAATCGAATTGAGTCTCTAACCCAGGTGTCCGGAGTTTTAGGCTGCCAGTGGGGTGATGAAGGTAAAGGCAAACTCGTTGACATCTTGGCCCAGCACTTTGACGTTGTTGCTCGTTGTCAGGTAAGACAAAGAAACACTCTGCTAGATACTCTCTGTGTTATTGGGAATGGTGTTGTGGTGCATCTTCCGGGCCTCTTTAAAGAGATTGATGGCCTTGAATCCAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGAAGTGGATGGGCTTCGAGAAGCTGAGCTTGCTAAATCTTTCATCGGTACAACCAAGAGAGGCATTGGACCTTGTTATTCTAGCAAGGTTATCCGGAATGGCATTCGAGTTGGTGACTTGAGGCACATGGACATTTTACCTCAGAAGCTAGATATTCTGTTGTCAGATGCTGCATCAAGATTCAAAGATTTTAAGTATGACCCCCAAATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATTTCCGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTAGATATTGACTTTGGAACATACCCTTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACTGGTCTGGGTATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCTACTGAAAACTTGGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAAGAGTTTGGAACAACTACCGGTCGCCCTCGTCGTTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCCGCAATTCAGTTGGGTGTTGCATACAAAACTAGTGATGGGACACCAATCAAATCATTCCCTGGAGATCTTCGCCTCCTTGAGCAAGTGAAAGTTGAATATGAAGTATTACCCGGATGGAATTCTGATATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAAGCCGCAAGACAATACGTGGAAAGAATTGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCGGACCTGGACGTGATGCTCTCATTTACAAATAG

Protein Analysis

473

Amino Acids

51.57

Weight (kDa)

8.2

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 74 - 102 6.5e-11 Adenylosuccinate synthetase
Adenylsucc_synt PF00709 111 - 470 9.7e-142 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 481
AccIII TCCGGA 2 cut(s) 215, 570
AciI CCGC 3 cut(s) 180, 1158, 1323
AcsI RAATTY 1 cut(s) 1276
AcuI CTGAAG 1 cut(s) 855
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 5 cut(s) 526, 710, 756, 889, 1365
AfiI CCNNNNNNNGG 3 cut(s) 179, 481, 875
AgeI ACCGGT 1 cut(s) 1043
AgsI TTSAA 5 cut(s) 404, 661, 803, 1253, 1349
AhlI ACTAGT 1 cut(s) 1187
AjiI CACGTC 1 cut(s) 1397
AjnI CCWGG 3 cut(s) 207, 1216, 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 1341, 1373
AluBI AGCT 5 cut(s) 500, 505, 625, 875, 1302
AluI AGCT 5 cut(s) 500, 505, 625, 875, 1302
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 204, 445
AlwNI CAGNNNCTG 1 cut(s) 647
Aor13HI TCCGGA 2 cut(s) 215, 570
AoxI GGCC 3 cut(s) 273, 376, 397
ApeKI GCWGC 4 cut(s) 23, 228, 647, 1095
ApoI RAATTY 1 cut(s) 1276
AseI ATTAAT 1 cut(s) 1104
AsiGI ACCGGT 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 68, 99
AspS9I GGNCC 6 cut(s) 182, 274, 376, 545, 968, 1388
AsuC2I CCSGG 2 cut(s) 375, 1269
AsuHPI GGTGA 8 cut(s) 162, 251, 446, 602, 932, 949, 1013, 1120
AvaII GGWCC 4 cut(s) 182, 545, 968, 1388
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 4 cut(s) 35, 215, 634, 1082
BccI CCATC 4 cut(s) 389, 479, 1187, 1266
BciT130I CCWGG 3 cut(s) 209, 1218, 1392
BcnI CCSGG 2 cut(s) 375, 1269
BcoDI GTCTC 2 cut(s) 204, 445
BcuI ACTAGT 1 cut(s) 1187
BfaI CTAG 5 cut(s) 329, 558, 626, 1136, 1188
BfoI RGCGCY 2 cut(s) 69, 100
BglII AGATCT 1 cut(s) 1222
BisI GCNGC 5 cut(s) 24, 229, 648, 1096, 1323
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 5 cut(s) 25, 230, 649, 1097, 1324
Bme1390I CCNGG 5 cut(s) 209, 375, 1218, 1269, 1392
Bme18I GGWCC 4 cut(s) 182, 545, 968, 1388
BmgBI CACGTC 1 cut(s) 1397
BmgT120I GGNCC 6 cut(s) 182, 274, 376, 545, 968, 1388
BmiI GGNNCC 2 cut(s) 67, 735
BmrFI CCNGG 5 cut(s) 209, 375, 1218, 1269, 1392
BmsI GCATC 5 cut(s) 22, 376, 634, 659, 1390
BpmI CTGGAG 2 cut(s) 77, 1239
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 3 cut(s) 616, 847, 1256
BpuMI CCSGG 2 cut(s) 375, 1269
BsaAI YACGTR 1 cut(s) 1336
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 207, 1216
BsaWI WCCGGW 3 cut(s) 215, 570, 1043
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 481, 875
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 2 cut(s) 232, 895
Bse3DI GCAATG 1 cut(s) 741
BseAI TCCGGA 2 cut(s) 215, 570
BseBI CCWGG 3 cut(s) 209, 1218, 1392
BseDI CCNNGG 2 cut(s) 207, 1216
BseGI GGATG 2 cut(s) 490, 1277
BseLI CCNNNNNNNGG 3 cut(s) 179, 481, 875
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 4 cut(s) 147, 492, 632, 714
BseNI ACTGG 2 cut(s) 232, 895
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 4 cut(s) 35, 215, 634, 1082
BseYI CCCAGC 2 cut(s) 164, 276
Bsh1285I CGRYCG 1 cut(s) 1048
BshFI GGCC 3 cut(s) 275, 378, 399
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 1043
BsiEI CGRYCG 1 cut(s) 1048
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 5 cut(s) 216, 374, 571, 1044, 1269
BslFI GGGAC 1 cut(s) 1210
BslI CCNNNNNNNGG 3 cut(s) 179, 481, 875
BsmAI GTCTC 2 cut(s) 204, 445
BsmFI GGGAC 1 cut(s) 1210
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 3 cut(s) 275, 378, 399
Bso31I GGTCTC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 454
Bsp13I TCCGGA 2 cut(s) 215, 570
Bsp143I GATC 3 cut(s) 445, 922, 1222
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 3 cut(s) 180, 1158, 1323
BspANI GGCC 3 cut(s) 275, 378, 399
BspCNI CTCAG 4 cut(s) 146, 493, 631, 715
BspEI TCCGGA 2 cut(s) 215, 570
BspLI GGNNCC 2 cut(s) 67, 735
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 2 cut(s) 232, 895
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 2 cut(s) 207, 1216
BssMI GATC 3 cut(s) 445, 922, 1222
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 3 cut(s) 209, 1218, 1392
Bst4CI ACNGT 1 cut(s) 754
BstACI GRCGYC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 1336
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 7 cut(s) 133, 155, 501, 618, 689, 723, 1010
BstEII GGTNACC 2 cut(s) 168, 1001
BstF5I GGATG 2 cut(s) 490, 1277
BstH2I RGCGCY 2 cut(s) 69, 100
BstHHI GCGC 2 cut(s) 68, 99
BstKTI GATC 3 cut(s) 448, 925, 1225
BstMAI GTCTC 2 cut(s) 204, 445
BstMBI GATC 3 cut(s) 445, 922, 1222
BstMCI CGRYCG 1 cut(s) 1048
BstMWI GCNNNNNNNGC 4 cut(s) 32, 63, 151, 506
BstNI CCWGG 3 cut(s) 209, 1218, 1392
BstPI GGTNACC 2 cut(s) 168, 1001
BstSCI CCNGG 5 cut(s) 207, 373, 1216, 1267, 1390
BstV1I GCAGC 4 cut(s) 35, 215, 634, 1082
BstX2I RGATCY 1 cut(s) 1222
BstXI CCANNNNNNTGG 2 cut(s) 1106, 1379
BstYI RGATCY 1 cut(s) 1222
BsuRI GGCC 3 cut(s) 275, 378, 399
BtgZI GCGATG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 1397
BtsCI GGATG 2 cut(s) 490, 1277
BtsIMutI CAGTG 2 cut(s) 239, 1082
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 2 cut(s) 68, 99
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 6 cut(s) 182, 274, 376, 545, 968, 1388
Csp6I GTAC 5 cut(s) 525, 709, 755, 888, 1364
CspAI ACCGGT 1 cut(s) 1043
CviAII CATG 1 cut(s) 604
CviQI GTAC 5 cut(s) 525, 709, 755, 888, 1364
DdeI CTNAG 7 cut(s) 133, 155, 501, 618, 689, 723, 1010
DinI GGCGCC 1 cut(s) 67
DpnI GATC 3 cut(s) 447, 924, 1224
DpnII GATC 3 cut(s) 445, 922, 1222
DraI TTTAAA 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 445
Eco32I GATATC 1 cut(s) 1285
Eco47I GGWCC 4 cut(s) 182, 545, 968, 1388
Eco57I CTGAAG 1 cut(s) 855
Eco91I GGTNACC 2 cut(s) 168, 1001
EcoO65I GGTNACC 2 cut(s) 168, 1001
EcoRI GAATTC 1 cut(s) 1276
EcoRII CCWGG 3 cut(s) 207, 1216, 1390
EcoRV GATATC 1 cut(s) 1285
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 607
FaiI YATR 8 cut(s) 118, 605, 675, 844, 946, 1076, 1180, 1257
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 1210
FatI CATG 1 cut(s) 603
FauI CCCGC 1 cut(s) 1165
Fnu4HI GCNGC 5 cut(s) 24, 229, 648, 1096, 1323
FokI GGATG 2 cut(s) 497, 1284
Fsp4HI GCNGC 5 cut(s) 24, 229, 648, 1096, 1323
FspBI CTAG 5 cut(s) 329, 558, 626, 1136, 1188
GlaI GCGC 2 cut(s) 67, 98
GluI GCNGC 5 cut(s) 24, 229, 648, 1096, 1323
GsaI CCCAGC 2 cut(s) 168, 280
GsuI CTGGAG 2 cut(s) 77, 1239
HaeII RGCGCY 2 cut(s) 69, 100
HaeIII GGCC 3 cut(s) 275, 378, 399
HapII CCGG 5 cut(s) 216, 374, 571, 1044, 1269
HhaI GCGC 2 cut(s) 68, 99
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 607
Hin6I GCGC 2 cut(s) 66, 97
HinP1I GCGC 2 cut(s) 66, 97
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 197, 404, 657
HpaII CCGG 5 cut(s) 216, 374, 571, 1044, 1269
HphI GGTGA 8 cut(s) 162, 251, 446, 602, 932, 949, 1013, 1120
Hpy166II GTNNAC 2 cut(s) 265, 1364
Hpy188I TCNGA 8 cut(s) 445, 621, 643, 781, 1150, 1282, 1309, 1388
Hpy188III TCNNGA 5 cut(s) 216, 494, 571, 654, 1025
Hpy8I GTNNAC 2 cut(s) 265, 1364
Hpy99I CGWCG 1 cut(s) 1059
HpyAV CCTTC 7 cut(s) 28, 239, 423, 748, 797, 879, 1016
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 3 cut(s) 288, 1335, 1396
HpyCH4V TGCA 5 cut(s) 367, 423, 650, 1018, 1178
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 63, 151, 506
HpyF3I CTNAG 7 cut(s) 133, 155, 501, 618, 689, 723, 1010
HpySE526I ACGT 3 cut(s) 288, 1335, 1396
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 607
HspAI GCGC 2 cut(s) 66, 97
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 215, 570
Kzo9I GATC 3 cut(s) 445, 922, 1222
LmnI GCTCC 1 cut(s) 910
Lsp1109I GCAGC 4 cut(s) 35, 215, 634, 1082
LweI GCATC 5 cut(s) 22, 376, 634, 659, 1390
MaeI CTAG 5 cut(s) 329, 558, 626, 1136, 1188
MaeII ACGT 3 cut(s) 288, 1335, 1396
MaeIII GTNAC 4 cut(s) 168, 590, 853, 1001
MalI GATC 3 cut(s) 447, 924, 1224
MboI GATC 3 cut(s) 445, 922, 1222
MboII GAAGA 6 cut(s) 362, 707, 796, 1107, 1217, 1361
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 4 cut(s) 192, 1161, 1276, 1344
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 910, 1366
MroI TCCGGA 2 cut(s) 215, 570
MseI TTAA 4 cut(s) 84, 384, 669, 1104
MspA1I CMGCKG 2 cut(s) 180, 875
MspI CCGG 5 cut(s) 216, 374, 571, 1044, 1269
MspR9I CCNGG 5 cut(s) 209, 375, 1218, 1269, 1392
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 3 cut(s) 209, 1218, 1392
MwoI GCNNNNNNNGC 4 cut(s) 32, 63, 151, 506
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 375, 1269
NdeII GATC 3 cut(s) 445, 922, 1222
NlaIII CATG 1 cut(s) 607
NlaIV GGNNCC 2 cut(s) 67, 735
NmuCI GTSAC 4 cut(s) 168, 590, 853, 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 1054
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 404, 657
PflMI CCANNNNNTGG 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 1043
PkrI GCNGC 5 cut(s) 25, 230, 649, 1097, 1324
PleI GAGTC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 1336
PshBI ATTAAT 1 cut(s) 1104
Psp6I CCWGG 3 cut(s) 207, 1216, 1390
PspEI GGTNACC 2 cut(s) 168, 1001
PspFI CCCAGC 2 cut(s) 164, 276
PspGI CCWGG 3 cut(s) 207, 1216, 1390
PspN4I GGNNCC 2 cut(s) 67, 735
PspPI GGNCC 6 cut(s) 182, 274, 376, 545, 968, 1388
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 1222
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 5 cut(s) 526, 710, 756, 889, 1365
RsaNI GTAC 5 cut(s) 525, 709, 755, 888, 1364
SaqAI TTAA 4 cut(s) 84, 384, 669, 1104
SatI GCNGC 5 cut(s) 24, 229, 648, 1096, 1323
Sau3AI GATC 3 cut(s) 445, 922, 1222
Sau96I GGNCC 6 cut(s) 182, 274, 376, 545, 968, 1388
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 5 cut(s) 209, 375, 1218, 1269, 1392
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 5 cut(s) 22, 376, 634, 659, 1390
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 4 cut(s) 182, 545, 968, 1388
SmlI CTYRAG 3 cut(s) 595, 862, 1235
SmoI CTYRAG 3 cut(s) 595, 862, 1235
SpeI ACTAGT 1 cut(s) 1187
Sse9I AATT 4 cut(s) 192, 1161, 1276, 1344
SsiI CCGC 3 cut(s) 180, 1158, 1323
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 5 cut(s) 329, 558, 626, 1136, 1188
StyD4I CCNGG 5 cut(s) 207, 373, 1216, 1267, 1390
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 3 cut(s) 291, 1338, 1399
TaqI TCGA 3 cut(s) 190, 493, 583
TasI AATT 4 cut(s) 192, 1161, 1276, 1344
TatI WGTACW 3 cut(s) 708, 754, 887
TauI GCSGC 1 cut(s) 1325
TfiI GAWTC 2 cut(s) 404, 657
Tru1I TTAA 4 cut(s) 84, 384, 669, 1104
Tru9I TTAA 4 cut(s) 84, 384, 669, 1104
TscAI CASTG 2 cut(s) 239, 1089
TseFI GTSAC 4 cut(s) 168, 590, 853, 1001
TseI GCWGC 4 cut(s) 23, 228, 647, 1095
Tsp45I GTSAC 4 cut(s) 168, 590, 853, 1001
TspDTI ATGAA 6 cut(s) 17, 258, 508, 730, 783, 1272
TspRI CASTG 2 cut(s) 239, 1089
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 4 cut(s) 182, 545, 968, 1388
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 1 cut(s) 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XspI CTAG 5 cut(s) 329, 558, 626, 1136, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.