Rroxscaffold_3G00276060

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
67353448 .. 67358490
5043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276060.1

Sequence Viewer

Length: 1431 bp
ATGAACAACCTCTCAGCCTTTGCAGCCCTTGATGCCAACCCACTCTCCAAAACATGCTATTTGGGCACCCACCACAACAGGTTTAATCTCCTCCAGCGCCCCAGAAATGTTGTTGTATGCTCAGTGAAGCCCTCAGTTGCCTCCCCCTCATTGCTAAGTGTGGCTGGGTCCCCCAACAGTGGGCCTAATCGAATTGAGTCTCTAACCCAGGTCTCAGGAGTTTTGGGGTGCCAGTGGGGTGATGAAGGTAAAGGCAAACTCGTTGACATCTTGGCCGAGCACTTTGACATTGTTGCTCGTTGTCAGGGAGGAGCTAATGCTGGACACACCATTTACAATGCAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTCAATGAGGATACTCTCTGTGTTATAGGGAATGGTGTTGTGGTGCATCTTCCGGGCCTCTTTAAAGAGATTGATGGCCTCGAATCTAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGCAGTGGATGGGCTTCGAGAATCTGAGCTTGCTAAATCTTTCATTGGTACTACCAAGAGAGGCATTGGACCTTGTTACTCTAGCAAGGTTATCCGGAATGGCATTCGAGTTGGTGACTTAAGGCACATGGATACTTTACCTCAGAAGCTAGATCTTCTGTTGTCAGATGCTGCATCAAGATTCAAAGGTTTTGAGTATGGCCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACGTACCCTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACCGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCACAACTACTGGTCGCCCTCGTCGCTGTGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCCGCAATTCAGTTGGGTGTTGCCTACAAAACTAGTGACGGCACACCAATCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGGAATATGAAGTATTGCCCGGATGGAATACTGACATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAGGCTGCACGTCAGTACGTGGAAAGAATAGAAGAACTTGTTGGTGTACCTATCCATTACATTGGTGTCGGGCCTGGACGTGATGCCCTCATTTACAAATAG

Protein Analysis

476

Amino Acids

52.0

Weight (kDa)

7.12

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 74 - 474 1.6e-153 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 65, 228
AccB7I CCANNNNNTGG 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 633
AciI CCGC 1 cut(s) 1176
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 917
AfaI GTAC 7 cut(s) 589, 773, 819, 908, 951, 1346, 1377
AfiI CCNNNNNNNGG 4 cut(s) 179, 180, 544, 937
AflII CTTAAG 1 cut(s) 658
AgeI ACCGGT 1 cut(s) 952
AgsI TTSAA 2 cut(s) 724, 866
AhlI ACTAGT 1 cut(s) 1205
AjiI CACGTC 2 cut(s) 1340, 1409
AjnI CCWGG 3 cut(s) 207, 1234, 1402
AjuI GAANNNNNNNTTGG 2 cut(s) 1353, 1385
AluBI AGCT 5 cut(s) 314, 568, 688, 937, 1314
AluI AGCT 5 cut(s) 314, 568, 688, 937, 1314
Alw21I GWGCWC 2 cut(s) 282, 517
Alw26I GTCTC 3 cut(s) 204, 217, 508
AlwNI CAGNNNCTG 1 cut(s) 710
Aor13HI TCCGGA 1 cut(s) 633
AoxI GGCC 6 cut(s) 182, 273, 439, 460, 739, 1400
ApeKI GCWGC 4 cut(s) 23, 710, 1113, 1334
AseI ATTAAT 1 cut(s) 1122
AsiGI ACCGGT 1 cut(s) 952
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 7 cut(s) 168, 182, 439, 608, 740, 986, 1400
AsuC2I CCSGG 2 cut(s) 438, 1281
AsuHPI GGTGA 7 cut(s) 251, 356, 509, 665, 967, 1031, 1138
AvaII GGWCC 3 cut(s) 168, 608, 986
AxyI CCTNAGG 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 2 cut(s) 65, 228
Bbv12I GWGCWC 2 cut(s) 282, 517
BbvI GCAGC 4 cut(s) 35, 697, 1100, 1321
BccI CCATC 4 cut(s) 452, 542, 845, 1278
BceAI ACGGC 1 cut(s) 1228
BciT130I CCWGG 3 cut(s) 209, 1236, 1404
BciVI GTATCC 2 cut(s) 388, 664
BcnI CCSGG 2 cut(s) 438, 1281
BcoDI GTCTC 3 cut(s) 204, 217, 508
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 4 cut(s) 621, 689, 1154, 1206
BfoI RGCGCY 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 658
BfuI GTATCC 2 cut(s) 388, 664
BglII AGATCT 2 cut(s) 691, 1240
BisI GCNGC 4 cut(s) 24, 711, 1114, 1335
BlsI GCNGC 4 cut(s) 25, 712, 1115, 1336
Bme1390I CCNGG 5 cut(s) 209, 438, 1236, 1281, 1404
Bme18I GGWCC 3 cut(s) 168, 608, 986
BmgBI CACGTC 2 cut(s) 1340, 1409
BmgT120I GGNCC 7 cut(s) 168, 182, 439, 608, 740, 986, 1400
BmiI GGNNCC 6 cut(s) 67, 169, 170, 230, 742, 798
BmrFI CCNGG 5 cut(s) 209, 438, 1236, 1281, 1404
BmsI GCATC 6 cut(s) 22, 439, 697, 722, 738, 1402
BpmI CTGGAG 2 cut(s) 77, 1257
BpuEI CTTGAG 2 cut(s) 909, 1274
BpuMI CCSGG 2 cut(s) 438, 1281
BsaAI YACGTR 1 cut(s) 1348
BsaI GGTCTC 2 cut(s) 217, 508
BsaJI CCNNGG 2 cut(s) 207, 1234
BsaWI WCCGGW 2 cut(s) 633, 952
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 180, 544, 937
Bse118I RCCGGY 1 cut(s) 952
Bse1I ACTGG 2 cut(s) 232, 1066
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 149, 804
BseAI TCCGGA 1 cut(s) 633
BseBI CCWGG 3 cut(s) 209, 1236, 1404
BseDI CCNNGG 2 cut(s) 207, 1234
BseGI GGATG 2 cut(s) 553, 1289
BseLI CCNNNNNNNGG 4 cut(s) 179, 180, 544, 937
BseMI GCAATG 2 cut(s) 149, 804
BseMII CTCAG 9 cut(s) 27, 135, 147, 228, 390, 555, 695, 777, 834
BseNI ACTGG 2 cut(s) 232, 1066
BseRI GAGGAG 2 cut(s) 80, 324
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 4 cut(s) 35, 697, 1100, 1321
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 1320
BshFI GGCC 6 cut(s) 184, 275, 441, 462, 741, 1402
BshNI GGYRCC 2 cut(s) 65, 228
BshTI ACCGGT 1 cut(s) 952
BsiHKAI GWGCWC 2 cut(s) 282, 517
BsiSI CCGG 4 cut(s) 437, 634, 953, 1281
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 4 cut(s) 179, 180, 544, 937
BsmAI GTCTC 3 cut(s) 204, 217, 508
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 6 cut(s) 184, 275, 441, 462, 741, 1402
Bso31I GGTCTC 2 cut(s) 217, 508
Bsp1286I GDGCHC 3 cut(s) 68, 282, 517
Bsp13I TCCGGA 1 cut(s) 633
Bsp143I GATC 3 cut(s) 508, 691, 1240
BspACI CCGC 1 cut(s) 1176
BspANI GGCC 6 cut(s) 184, 275, 441, 462, 741, 1402
BspCNI CTCAG 9 cut(s) 26, 134, 146, 227, 389, 556, 694, 778, 835
BspEI TCCGGA 1 cut(s) 633
BspLI GGNNCC 6 cut(s) 67, 169, 170, 230, 742, 798
BspT107I GGYRCC 2 cut(s) 65, 228
BspTI CTTAAG 1 cut(s) 658
BspTNI GGTCTC 2 cut(s) 217, 508
BsrDI GCAATG 2 cut(s) 149, 804
BsrFI RCCGGY 1 cut(s) 952
BsrI ACTGG 2 cut(s) 232, 1066
BssAI RCCGGY 1 cut(s) 952
BssECI CCNNGG 2 cut(s) 207, 1234
BssMI GATC 3 cut(s) 508, 691, 1240
Bst2UI CCWGG 3 cut(s) 209, 1236, 1404
Bst4CI ACNGT 2 cut(s) 179, 817
BstAFI CTTAAG 1 cut(s) 658
BstBAI YACGTR 1 cut(s) 1348
BstC8I GCNNGC 1 cut(s) 570
BstEII GGTNACC 1 cut(s) 1019
BstF5I GGATG 2 cut(s) 553, 1289
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 511, 694, 1243
BstMAI GTCTC 3 cut(s) 204, 217, 508
BstMBI GATC 3 cut(s) 508, 691, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1074
BstNI CCWGG 3 cut(s) 209, 1236, 1404
BstNSI RCATGY 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 1019
BstSCI CCNGG 5 cut(s) 207, 436, 1234, 1279, 1402
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 35, 697, 1100, 1321
BstX2I RGATCY 2 cut(s) 691, 1240
BstXI CCANNNNNNTGG 2 cut(s) 1124, 1391
BstYI RGATCY 2 cut(s) 691, 1240
Bsu36I CCTNAGG 1 cut(s) 376
BsuI GTATCC 2 cut(s) 388, 664
BsuRI GGCC 6 cut(s) 184, 275, 441, 462, 741, 1402
BtrI CACGTC 2 cut(s) 1340, 1409
BtsCI GGATG 2 cut(s) 553, 1289
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 5 cut(s) 129, 184, 239, 549, 1100
Cac8I GCNNGC 1 cut(s) 570
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 952
Cfr13I GGNCC 7 cut(s) 168, 182, 439, 608, 740, 986, 1400
Csp6I GTAC 7 cut(s) 588, 772, 818, 907, 950, 1345, 1376
CspAI ACCGGT 1 cut(s) 952
CviAII CATG 2 cut(s) 54, 667
CviQI GTAC 7 cut(s) 588, 772, 818, 907, 950, 1345, 1376
DpnI GATC 3 cut(s) 510, 693, 1242
DpnII GATC 3 cut(s) 508, 691, 1240
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 217, 508
Eco47I GGWCC 3 cut(s) 168, 608, 986
Eco57I CTGAAG 1 cut(s) 917
Eco81I CCTNAGG 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 1019
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 1019
EcoRII CCWGG 3 cut(s) 207, 1234, 1402
FaeI CATG 2 cut(s) 57, 670
FaiI YATR 8 cut(s) 55, 118, 410, 668, 738, 964, 1094, 1269
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 53, 666
FauI CCCGC 1 cut(s) 1183
Fnu4HI GCNGC 4 cut(s) 24, 711, 1114, 1335
FokI GGATG 2 cut(s) 560, 1296
Fsp4HI GCNGC 4 cut(s) 24, 711, 1114, 1335
FspBI CTAG 4 cut(s) 621, 689, 1154, 1206
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 24, 711, 1114, 1335
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 77, 1257
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 6 cut(s) 184, 275, 441, 462, 741, 1402
HapII CCGG 4 cut(s) 437, 634, 953, 1281
HhaI GCGC 1 cut(s) 99
Hin1II CATG 2 cut(s) 57, 670
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 4 cut(s) 197, 467, 560, 720
HpaII CCGG 4 cut(s) 437, 634, 953, 1281
HphI GGTGA 7 cut(s) 251, 356, 509, 665, 967, 1031, 1138
Hpy166II GTNNAC 2 cut(s) 265, 1376
Hpy188I TCNGA 7 cut(s) 508, 565, 684, 706, 844, 1168, 1321
Hpy188III TCNNGA 6 cut(s) 216, 557, 634, 717, 1043, 1253
Hpy8I GTNNAC 2 cut(s) 265, 1376
Hpy99I CGWCG 1 cut(s) 1077
HpyAV CCTTC 8 cut(s) 239, 338, 486, 811, 860, 941, 1034, 1259
HpyCH4III ACNGT 2 cut(s) 179, 817
HpyCH4IV ACGT 4 cut(s) 905, 1339, 1347, 1408
HpyCH4V TGCA 8 cut(s) 23, 341, 359, 430, 486, 713, 1036, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1074
HpySE526I ACGT 4 cut(s) 905, 1339, 1347, 1408
Hsp92II CATG 2 cut(s) 57, 670
HspAI GCGC 1 cut(s) 97
KflI GGGWCCC 1 cut(s) 168
Kpn2I TCCGGA 1 cut(s) 633
Kzo9I GATC 3 cut(s) 508, 691, 1240
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 4 cut(s) 35, 697, 1100, 1321
LweI GCATC 6 cut(s) 22, 439, 697, 722, 738, 1402
MaeI CTAG 4 cut(s) 621, 689, 1154, 1206
MaeII ACGT 4 cut(s) 905, 1339, 1347, 1408
MaeIII GTNAC 5 cut(s) 614, 653, 915, 1019, 1208
MalI GATC 3 cut(s) 510, 693, 1242
MboI GATC 3 cut(s) 508, 691, 1240
MboII GAAGA 7 cut(s) 425, 686, 770, 859, 1125, 1235, 1373
MflI RGATCY 2 cut(s) 691, 1240
MhlI GDGCHC 3 cut(s) 68, 282, 517
MluCI AATT 2 cut(s) 192, 1179
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 867
MroI TCCGGA 1 cut(s) 633
MseI TTAA 4 cut(s) 84, 447, 659, 1122
MspA1I CMGCKG 1 cut(s) 937
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 4 cut(s) 437, 634, 953, 1281
MspR9I CCNGG 5 cut(s) 209, 438, 1236, 1281, 1404
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 3 cut(s) 209, 1236, 1404
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1074
NciI CCSGG 2 cut(s) 438, 1281
NdeII GATC 3 cut(s) 508, 691, 1240
NlaIII CATG 2 cut(s) 57, 670
NlaIV GGNNCC 6 cut(s) 67, 169, 170, 230, 742, 798
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 4 cut(s) 653, 915, 1019, 1208
NspI RCATGY 1 cut(s) 57
PctI GAATGC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 467, 560, 720
PflMI CCANNNNNTGG 1 cut(s) 544
PinAI ACCGGT 1 cut(s) 952
PkrI GCNGC 4 cut(s) 25, 712, 1115, 1336
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 1348
PpuMI RGGWCCY 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 1122
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 207, 1234, 1402
PspEI GGTNACC 1 cut(s) 1019
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 3 cut(s) 207, 1234, 1402
PspN4I GGNNCC 6 cut(s) 67, 169, 170, 230, 742, 798
PspPI GGNCC 7 cut(s) 168, 182, 439, 608, 740, 986, 1400
PspPPI RGGWCCY 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 691, 1240
PvuII CAGCTG 1 cut(s) 937
RsaI GTAC 7 cut(s) 589, 773, 819, 908, 951, 1346, 1377
RsaNI GTAC 7 cut(s) 588, 772, 818, 907, 950, 1345, 1376
SaqAI TTAA 4 cut(s) 84, 447, 659, 1122
SatI GCNGC 4 cut(s) 24, 711, 1114, 1335
Sau3AI GATC 3 cut(s) 508, 691, 1240
Sau96I GGNCC 7 cut(s) 168, 182, 439, 608, 740, 986, 1400
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 5 cut(s) 209, 438, 1236, 1281, 1404
SduI GDGCHC 3 cut(s) 68, 282, 517
SfaNI GCATC 6 cut(s) 22, 439, 697, 722, 738, 1402
SinI GGWCC 3 cut(s) 168, 608, 986
SmlI CTYRAG 3 cut(s) 658, 924, 1253
SmoI CTYRAG 3 cut(s) 658, 924, 1253
SpeI ACTAGT 1 cut(s) 1205
Sse9I AATT 2 cut(s) 192, 1179
SsiI CCGC 1 cut(s) 1176
SspMI CTAG 4 cut(s) 621, 689, 1154, 1206
StyD4I CCNGG 5 cut(s) 207, 436, 1234, 1279, 1402
TaaI ACNGT 2 cut(s) 179, 817
TaiI ACGT 4 cut(s) 908, 1342, 1350, 1411
TaqI TCGA 4 cut(s) 190, 465, 556, 646
TasI AATT 2 cut(s) 192, 1179
TatI WGTACW 2 cut(s) 771, 817
TfiI GAWTC 3 cut(s) 467, 560, 720
Tru1I TTAA 4 cut(s) 84, 447, 659, 1122
Tru9I TTAA 4 cut(s) 84, 447, 659, 1122
TscAI CASTG 5 cut(s) 129, 184, 239, 549, 1107
TseFI GTSAC 4 cut(s) 653, 915, 1019, 1208
TseI GCWGC 4 cut(s) 23, 710, 1113, 1334
Tsp45I GTSAC 4 cut(s) 653, 915, 1019, 1208
TspDTI ATGAA 6 cut(s) 17, 258, 571, 793, 846, 1284
TspRI CASTG 5 cut(s) 129, 184, 239, 549, 1107
Van91I CCANNNNNTGG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 658
VpaK11BI GGWCC 3 cut(s) 168, 608, 986
VspI ATTAAT 1 cut(s) 1122
XceI RCATGY 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XspI CTAG 4 cut(s) 621, 689, 1154, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.