Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002974

Physical Location & Seq

Genomic Coordinates Reverse (-)

70765096 .. 70766925

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0522200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGATGCGCAAAACTTGTCCTTGTTGCAGCAGCAGCACAAGGGGTAAGCCATTTCTTCACTCTCCCACTCTTGTTGTTTTCATCAACAATTACATGAGCACAAGAAGCAGAGGGTTTCGTTCTCAACCCTCAAACCCCGCTGAATCTAGAGATACCCACCGAGGGAAGCTTGTGAGAGACAACCCCCAACCCTCTGTGCCCAAAGTCAGAAGTCTTGAACATGCCTTGAAGGTGTTCGATGAAATGCTTCAAAGAAGTCCTCTGCCTTCGGTTGTCCGTTTCACTCAGATATTGGGTCAACTTGTCAAACTGAAACACTATTCTCAAGTCATCGCTTTGAATAGACGAATGGGTCTGATTGGAATCGCTTCTGATGTTTATACTCTGTCTATTATCATCAACTGCTATTGCCATTTGAATCAAATGGGGTTTAGCTTATCTGTCTTGGCACAATTCTTCAAATTGGGTCTTCAACCAACTGTCACCACCTACACTACTCTAATCAACGGCTTTGTTCTCAAGAATAGAATGGCTGAGGCAGCAGGGATTTTCAGCAAAATGCTGCAGGCAGGTCATTGTGTGCCCAATGTGGTTACTTTCAGCACACTAATAAAGGGACTTTGCATGAGGGGTGACAACAGTGCAGCTATTCAATTGCTCAGGAAAATGGAAGAAAGAGGTTGTAAGCCTGACATTGTCGTCTACAGCACGATCATTGACAGTCTTTGCAAGGATACGCTAGTTGTTGATGCACTGAACCTCTTCTCAGAAATGATTAGTAGGGGCATTGCTCCAAACGTGGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAACATAGGTCAGTGGAAAGAAGCTAAAAGTTTGTTGAATGAAATGGTCAGTAGAAACATCTGTCCGAATGTATTCACCTTCAGTGTCTTGGTTGATACACTTTGTAAGGAGGGAATGGTCGTGGAAGCCAAAAGTGTGATTGAAATGATGATCCAAAGAGGTATTGAGCCTGATACGATTACATACAACTCACTTATGGACGGTTACTGTTTGCGGGGAGAAATGGATGAAGCAAGAAAAGTCTTTGATCTAATGCTTAGCAAGGCCTGCATGGTTGATGTTCGTAGTTGTAACATATTGATAAATGGATACTGTAAGCTTAAACAGATTGATCAGGCCAACCAGGTTTTTCAAGAAATGCTTCATAGGGAACTTGTTCCAGATACCATCACTTACAGCACTCTTATTGACGGTTTTTGTAAAGCGGGAAGAATACAGGTAGCAGAGAAGTTGTTCTCTCAGATGCAAGGTAGTGGCCAACTTCCAGATCTTCATACTTATGCCATTTTACTTGATGGCCTATGTAGAACCAACCAACTTTGTACGGCAATGGAACTGCTTAGAGAGATGGAAGACAAGAAGTTGGAACTAGATATTGTAATTTACACCATCTTCATTGAAGGTTTGTGCAAAGCTGGAAAACTTGAATCTGCAACAGATATCTTCTCTAGTTTGTCTTCAAAAAGAGTTCAGCCTGATGTGAAGGCATATAATGTGATGATTAATGGACTGTGTAATGGAGGCCTATTGGCTGAAGCAGAAAAGTTGCTTAGAGAGATGGGAGAGAAAGGCTGTTCTCCCGATGGTTGTACATATAACATAATTATCCGAGGATTTATCAATAACAATGAGACATCAAGGGCTGTGGGACTTATTCAAGAAATGGTGGAGATGGGGTTTTCTGCAGATGCATCAACTACGGAATTGATAATTGATTTGTTGTCTAAAGATAAAGTAGATCCAGCTTTGTTGTCATTGTTAAAAAGTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004019 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016874 GO:0016879 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044208 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046033 GO:0046040 GO:0046390 GO:0046483 GO:0046686 GO:0048046 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

Adenylsucc_synt

Protein Analysis

609

Amino Acids

67.7

Weight (kDa)

8.22

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	152 - 205	3.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	156 - 187	6.8e-07	PPR repeat
PPR_2	PF13041	159 - 208	9.3e-13	PPR repeat family
PPR_1	PF12854	193 - 224	3.5e-11	PPR repeat
PPR_2	PF13041	195 - 244	4.8e-16	PPR repeat family
PPR_3	PF13812	195 - 240	2.3e-08	Pentatricopeptide repeat domain
PPR	PF01535	198 - 228	5.4e-06	PPR repeat
PPR_1	PF12854	226 - 258	2.8e-11	PPR repeat
PPR_2	PF13041	230 - 279	8.6e-17	PPR repeat family
PPR_long	PF17177	247 - 361	4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	254 - 312	4.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	261 - 294	1.2e-10	PPR repeat
PPR_2	PF13041	265 - 314	4.1e-18	PPR repeat family
PPR	PF01535	268 - 298	3.1e-07	PPR repeat
PPR_1	PF12854	296 - 328	2.6e-08	PPR repeat
PPR_2	PF13041	309 - 348	3.1e-10	PPR repeat family
PPR_3	PF13812	324 - 382	8.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 363	1.1e-12	PPR repeat
PPR_2	PF13041	335 - 384	1.9e-15	PPR repeat family
PPR	PF01535	338 - 366	2.6e-08	PPR repeat
PPR_1	PF12854	368 - 398	6.2e-06	PPR repeat
PPR_2	PF13041	371 - 419	1.6e-17	PPR repeat family
PPR	PF01535	374 - 401	6.6e-06	PPR repeat
PPR_long	PF17177	386 - 491	3.8e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	391 - 502	5.5e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	402 - 434	5.4e-14	PPR repeat
PPR_2	PF13041	405 - 454	3.1e-17	PPR repeat family
PPR	PF01535	408 - 437	7.2e-08	PPR repeat
PPR_1	PF12854	437 - 469	1.2e-07	PPR repeat
PPR_3	PF13812	464 - 520	2.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	473 - 501	3.4e-07	PPR repeat
PPR_2	PF13041	476 - 524	2.4e-14	PPR repeat family
PPR_1	PF12854	507 - 538	9.4e-10	PPR repeat
PPR_3	PF13812	509 - 557	7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	510 - 558	3.5e-16	PPR repeat family
PPR	PF01535	514 - 543	1.2e-07	PPR repeat
PPR_1	PF12854	541 - 574	5.1e-06	PPR repeat
PPR_2	PF13041	548 - 593	8.8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57610
fragaria_vesca	FvH4_2g02690 FvH4_7g07940
malus_domestica	MD00G1080700.v1.1 MD05G1111200.v1.1 MD15G1386600.v1.1
prunus_persica	Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.5G015200_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1 Prupe.8G156300_v2.0.a1
pyrus_communis	pycom05g10700 pycom10g09910 pycom15g34650
rosa_chinensis	RchiOBHm_Chr6g0247091 RchiOBHm_Chr6g0247101 RchiOBHm_Chr7g0177111 RchiOBHm_Chr7g0177151
rosa_laevigata	RLG00000015220 RLG00000030365
rosa_multiflora	Rmu_sc0005310.1_g000020 Rmu_sc0010391.1_g000001 Rmu_sc0012524.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276060 Rroxscaffold_7G00214350
rosa_rugosa	Rorug05G0522100 Rorug05G0522200 Rorug05G0522300
rosa_samantha	Rh6AG037300 Rh6BG032200 Rh6CG033300 Rh6DG031000 Rh7AG003500 Rh7CG003200
rosa_wichuraiana	Rw6G003200 Rw7G000290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	351, 698
Acc16I	TGCGCA	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	3 cut(s)	138, 1048, 1259
AclWI	GGATC	2 cut(s)	979, 1787
AcoI	YGGCCR	1 cut(s)	1309
AcuI	CTGAAG	2 cut(s)	898, 1608
AfaI	GTAC	2 cut(s)	1378, 1645
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	1176
AluBI	AGCT	7 cut(s)	169, 435, 647, 857, 1153, 1469, 1799
AluI	AGCT	7 cut(s)	169, 435, 647, 857, 1153, 1469, 1799
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	171, 1679
AlwI	GGATC	2 cut(s)	979, 1787
AoxI	GGCC	5 cut(s)	1098, 1170, 1309, 1351, 1576
ApeKI	GCWGC	6 cut(s)	27, 30, 33, 539, 562, 644
AseI	ATTAAT	1 cut(s)	1557
Asp700I	GAANNNNTTC	8 cut(s)	233, 246, 367, 761, 905, 1194, 1209, 1286
AspLEI	GCGC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	475, 644, 901
BaeGI	GKGCMC	2 cut(s)	201, 585
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BalI	TGGCCA	1 cut(s)	1311
BbsI	GAAGAC	3 cut(s)	461, 1413, 1503
Bbv12I	GWGCWC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	6 cut(s)	39, 42, 45, 549, 551, 656
BccI	CCATC	7 cut(s)	1229, 1343, 1396, 1451, 1606, 1631, 1720
BceAI	ACGGC	2 cut(s)	523, 1395
BciT130I	CCWGG	1 cut(s)	1178
BciVI	GTATCC	2 cut(s)	727, 1136
BclI	TGATCA	1 cut(s)	1165
BcoDI	GTCTC	2 cut(s)	171, 1679
BfaI	CTAG	4 cut(s)	147, 740, 1424, 1503
BfmI	CTRYAG	3 cut(s)	563, 703, 1737
BfuAI	ACCTGC	1 cut(s)	560
BfuI	GTATCC	2 cut(s)	727, 1136
BglII	AGATCT	1 cut(s)	1321
BisI	GCNGC	6 cut(s)	28, 31, 34, 540, 563, 645
BlpI	GCTNAGC	1 cut(s)	1091
BlsI	GCNGC	6 cut(s)	29, 32, 35, 541, 564, 646
Bme1390I	CCNGG	1 cut(s)	1178
BmrFI	CCNGG	1 cut(s)	1178
BmsI	GCATC	4 cut(s)	739, 1287, 1732, 1754
BpiI	GAAGAC	3 cut(s)	461, 1413, 1503
Bpu10I	CCTNAGC	2 cut(s)	534, 659
Bpu1102I	GCTNAGC	1 cut(s)	1091
BpuEI	CTTGAG	2 cut(s)	309, 503
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	160, 1663
BsaXI	ACNNNNNCTCC	2 cut(s)	1715, 1745
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	786, 1389
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	1178
BseDI	CCNNGG	2 cut(s)	160, 1663
BseGI	GGATG	1 cut(s)	1066
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	2 cut(s)	786, 1389
BseMII	CTCAG	5 cut(s)	299, 525, 673, 780, 1307
BseSI	GKGCMC	2 cut(s)	201, 585
BseXI	GCAGC	6 cut(s)	39, 42, 45, 549, 551, 656
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	5 cut(s)	1100, 1172, 1311, 1353, 1578
BsiHKAI	GWGCWC	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	630, 1716
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	171, 1679
BsmFI	GGGAC	2 cut(s)	630, 1716
BsnI	GGCC	5 cut(s)	1100, 1172, 1311, 1353, 1578
Bsp1286I	GDGCHC	3 cut(s)	101, 201, 585
Bsp1407I	TGTACA	1 cut(s)	1643
Bsp143I	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
Bsp1720I	GCTNAGC	1 cut(s)	1091
BspACI	CCGC	3 cut(s)	138, 1048, 1259
BspANI	GGCC	5 cut(s)	1100, 1172, 1311, 1353, 1578
BspCNI	CTCAG	5 cut(s)	298, 526, 672, 779, 1306
BspMAI	CTGCAG	2 cut(s)	567, 1741
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	979, 1787
BsrDI	GCAATG	2 cut(s)	786, 1389
BsrGI	TGTACA	1 cut(s)	1643
BssECI	CCNNGG	2 cut(s)	160, 1663
BssMI	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
Bst2UI	CCWGG	1 cut(s)	1178
Bst4CI	ACNGT	8 cut(s)	481, 641, 722, 1037, 1043, 1148, 1247, 1566
Bst6I	CTCTTC	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	1101
BstAUI	TGTACA	1 cut(s)	1643
BstC8I	GCNNGC	2 cut(s)	567, 1102
BstDEI	CTNAG	8 cut(s)	285, 534, 659, 766, 1091, 1293, 1394, 1604
BstF5I	GGATG	1 cut(s)	1066
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	6 cut(s)	714, 987, 1084, 1168, 1324, 1795
BstMAI	GTCTC	2 cut(s)	171, 1679
BstMBI	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 105, 539, 1101
BstNI	CCWGG	1 cut(s)	1178
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	1176
BstSFI	CTRYAG	3 cut(s)	563, 703, 1737
BstSLI	GKGCMC	2 cut(s)	201, 585
BstV1I	GCAGC	6 cut(s)	39, 42, 45, 549, 551, 656
BstV2I	GAAGAC	3 cut(s)	461, 1413, 1503
BstX2I	RGATCY	2 cut(s)	1321, 1792
BstYI	RGATCY	2 cut(s)	1321, 1792
BsuI	GTATCC	2 cut(s)	727, 1136
BsuRI	GGCC	5 cut(s)	1100, 1172, 1311, 1353, 1578
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	1066
BtsIMutI	CAGTG	4 cut(s)	646, 752, 851, 922
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	567, 1102
CfoI	GCGC	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	1176
Csp6I	GTAC	2 cut(s)	1377, 1644
CspCI	CAANNNNNGTGG	4 cut(s)	55, 90, 1680, 1715
CviAII	CATG	4 cut(s)	94, 221, 625, 1105
CviQI	GTAC	2 cut(s)	1377, 1644
DdeI	CTNAG	8 cut(s)	285, 534, 659, 766, 1091, 1293, 1394, 1604
DpnI	GATC	6 cut(s)	713, 986, 1083, 1167, 1323, 1794
DpnII	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
DrdI	GACNNNNNNGTC	2 cut(s)	351, 698
DseDI	GACNNNNNNGTC	2 cut(s)	351, 698
EaeI	YGGCCR	1 cut(s)	1309
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Eco147I	AGGCCT	2 cut(s)	1100, 1578
Eco32I	GATATC	1 cut(s)	1495
Eco57I	CTGAAG	2 cut(s)	898, 1608
EcoRII	CCWGG	1 cut(s)	1176
EcoRV	GATATC	1 cut(s)	1495
EcoT22I	ATGCAT	1 cut(s)	1747
FaeI	CATG	4 cut(s)	97, 224, 628, 1108
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	2 cut(s)	630, 1716
FatI	CATG	4 cut(s)	93, 220, 624, 1104
FauI	CCCGC	3 cut(s)	145, 1041, 1252
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	6 cut(s)	28, 31, 34, 540, 563, 645
FokI	GGATG	1 cut(s)	1073
Fsp4HI	GCNGC	6 cut(s)	28, 31, 34, 540, 563, 645
FspBI	CTAG	4 cut(s)	147, 740, 1424, 1503
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	6 cut(s)	28, 31, 34, 540, 563, 645
HaeIII	GGCC	5 cut(s)	1100, 1172, 1311, 1353, 1578
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	97, 224, 628, 1108
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	2 cut(s)	167, 1151
HinfI	GANTC	5 cut(s)	143, 363, 418, 820, 1481
HphI	GGTGA	3 cut(s)	475, 644, 901
Hpy166II	GTNNAC	2 cut(s)	299, 703
Hpy188I	TCNGA	8 cut(s)	209, 288, 357, 373, 769, 900, 1296, 1664
Hpy188III	TCNNGA	9 cut(s)	147, 215, 520, 661, 1187, 1214, 1319, 1634, 1712
Hpy8I	GTNNAC	2 cut(s)	299, 703
HpyAV	CCTTC	5 cut(s)	223, 276, 922, 1448, 1531
HpyCH4III	ACNGT	8 cut(s)	481, 641, 722, 1037, 1043, 1148, 1247, 1566
HpyCH4IV	ACGT	1 cut(s)	798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 105, 539, 1101
HpyF3I	CTNAG	8 cut(s)	285, 534, 659, 766, 1091, 1293, 1394, 1604
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	4 cut(s)	97, 224, 628, 1108
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	6 cut(s)	39, 42, 45, 549, 551, 656
LweI	GCATC	4 cut(s)	739, 1287, 1732, 1754
MabI	ACCWGGT	1 cut(s)	1176
MaeI	CTAG	4 cut(s)	147, 740, 1424, 1503
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	6 cut(s)	481, 592, 632, 802, 1037, 1124
MalI	GATC	6 cut(s)	713, 986, 1083, 1167, 1323, 1794
MboI	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	2 cut(s)	1321, 1792
MhlI	GDGCHC	3 cut(s)	101, 201, 585
MlsI	TGGCCA	1 cut(s)	1311
MluCI	AATT	8 cut(s)	88, 452, 461, 653, 1434, 1656, 1757, 1764
MluNI	TGGCCA	1 cut(s)	1311
MmeI	TCCRAC	1 cut(s)	1398
Mox20I	TGGCCA	1 cut(s)	1311
Mph1103I	ATGCAT	1 cut(s)	1747
MroXI	GAANNNNTTC	8 cut(s)	233, 246, 367, 761, 905, 1194, 1209, 1286
MscI	TGGCCA	1 cut(s)	1311
MseI	TTAA	3 cut(s)	1155, 1557, 1814
MslI	CAYNNNNRTG	1 cut(s)	1332
Msp20I	TGGCCA	1 cut(s)	1311
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	1178
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	1178
MwoI	GCNNNNNNNGC	4 cut(s)	33, 105, 539, 1101
NdeII	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
NlaIII	CATG	4 cut(s)	97, 224, 628, 1108
NmuCI	GTSAC	2 cut(s)	481, 632
NsbI	TGCGCA	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	1747
NspI	RCATGY	1 cut(s)	224
PceI	AGGCCT	2 cut(s)	1100, 1578
PdmI	GAANNNNTTC	8 cut(s)	233, 246, 367, 761, 905, 1194, 1209, 1286
PfeI	GAWTC	5 cut(s)	143, 363, 418, 820, 1481
PflFI	GACNNNGTC	1 cut(s)	695
PkrI	GCNGC	6 cut(s)	29, 32, 35, 541, 564, 646
PshBI	ATTAAT	1 cut(s)	1557
Psp6I	CCWGG	1 cut(s)	1176
PspGI	CCWGG	1 cut(s)	1176
PstI	CTGCAG	2 cut(s)	567, 1741
PsuI	RGATCY	2 cut(s)	1321, 1792
PsyI	GACNNNGTC	1 cut(s)	695
RsaI	GTAC	2 cut(s)	1378, 1645
RsaNI	GTAC	2 cut(s)	1377, 1644
RseI	CAYNNNNRTG	1 cut(s)	1332
SaqAI	TTAA	3 cut(s)	1155, 1557, 1814
SatI	GCNGC	6 cut(s)	28, 31, 34, 540, 563, 645
Sau3AI	GATC	6 cut(s)	711, 984, 1081, 1165, 1321, 1792
ScrFI	CCNGG	1 cut(s)	1178
SduI	GDGCHC	3 cut(s)	101, 201, 585
SexAI	ACCWGGT	1 cut(s)	1176
SfaNI	GCATC	4 cut(s)	739, 1287, 1732, 1754
SfcI	CTRYAG	3 cut(s)	563, 703, 1737
SmiMI	CAYNNNNRTG	1 cut(s)	1332
SmlI	CTYRAG	2 cut(s)	324, 518
SmoI	CTYRAG	2 cut(s)	324, 518
Sse9I	AATT	8 cut(s)	88, 452, 461, 653, 1434, 1656, 1757, 1764
SseBI	AGGCCT	2 cut(s)	1100, 1578
SsiI	CCGC	3 cut(s)	138, 1048, 1259
SspMI	CTAG	4 cut(s)	147, 740, 1424, 1503
StuI	AGGCCT	2 cut(s)	1100, 1578
StyD4I	CCNGG	1 cut(s)	1176
TaaI	ACNGT	8 cut(s)	481, 641, 722, 1037, 1043, 1148, 1247, 1566
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	1 cut(s)	237
TasI	AATT	8 cut(s)	88, 452, 461, 653, 1434, 1656, 1757, 1764
TatI	WGTACW	1 cut(s)	1643
TfiI	GAWTC	5 cut(s)	143, 363, 418, 820, 1481
Tru1I	TTAA	3 cut(s)	1155, 1557, 1814
Tru9I	TTAA	3 cut(s)	1155, 1557, 1814
TscAI	CASTG	4 cut(s)	646, 759, 851, 922
TseFI	GTSAC	2 cut(s)	481, 632
TseI	GCWGC	6 cut(s)	27, 30, 33, 539, 562, 644
Tsp45I	GTSAC	2 cut(s)	481, 632
TspDTI	ATGAA	8 cut(s)	70, 255, 888, 1077, 1187, 1316, 1438, 1812
TspGWI	ACGGA	2 cut(s)	266, 1769
TspRI	CASTG	4 cut(s)	646, 759, 851, 922
Tth111I	GACNNNGTC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	1557
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	8 cut(s)	233, 246, 367, 761, 905, 1194, 1209, 1286
XspI	CTAG	4 cut(s)	147, 740, 1424, 1503
Zsp2I	ATGCAT	1 cut(s)	1747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.