Rroxscaffold_7G00214350

Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
64963265 .. 64965578
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214350.1

Sequence Viewer

Length: 1386 bp
ATGAACAACCTCTCAGCCTTTGCAGCCCTTGATGCCAACCCACTCTCCAAAACTTGCTATTTGGGCACGCACCACAACAGGTTTAATCTCCTCCAGCGCCCCAGAAATGTCGTTGTATGCTTAGTGAAGCCCTCAGTCGCCTCCCCCTCATCGCTAAGTAAAGGCAAACTCGTTGACATCTTGGCCGAGCACTTTGACATTGTTGCTCGTTGTCAGGGAGGAGCTAATGCTGGACACACCATTTACAATGCAGAAGGAAAGAAGTTTGCACTTCACCTTGTTCCCTCAGGTATTCTCAATGAGGATACTCTCTGTGTTATAGGGAATGGTGTTGTGGTGCATCTTCCAGGCCTCTTTAAAGAGATTGATGGCCTCGAATCTAATGGAGTGTCTTGCAAGGGAAGGATATTGGTCTCTGATCGTGCTCACCTCTTATTTGATTTCCACCAAGCAGTGGATGGGCTTCGAGAATCCGAGCTTGCTAAATCTTTCATTGGTACTACCAAGAGAGGCATTGGACCTTGTTACTCTAGCAAGGTTATCCGGAATGGCATTCGAGTTGGTGACTTGAGGCACATGGATACTTTACCTCAGAAGCTGGATCTTCTGTTGTCAGATGCTGCATCAAGATTCAAAGGTTTTGAGTATGGCCCCCAGATGCTTAGAGAAGAAGTAGAAAAGTACAAGAGATTTGCTGAGAGATTGGAACCCTTCATTGCTGATACTGTACTTGTTGTGAATGAAGCCATCTCTGAGAAGAAAAAGATTTTAGTTGAAGGGGGTCAGGCAACAATGTTGGATATTGACTTTGGAACGTACCCCTTTGTCACTTCCTCAAGTCCTTCAGCTGGTGGGATTTGTACTGGTCTTGGCATTGCTCCCAGAGTTTTAGGTGATCTCGTTGGAGTGGTGAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTCCCCACAGAAAACTTAGGTAAAGAGGGTGACCTTCTTAGGTTGCAAGGTCAGGAGTTTGGCACCACTACTGGTCGCCCTCGTCGCTATGGTTGGCTTGATATAGTAGCACTGAAATACTGCTGCCAGATTAATGGCTTTTCTTCTCTCAATCTCACCAAACTAGATGTTTTGTCTGATTTTCCCGCAATTCAGTTGGGTGTTGCCTACAAAACTAGTGACGGCACACCAGTCAAATCATTCCCTGGAGATCTTCGCCTTCTTGAGCAAGTGGAATATGAAGTATTGCCGGGATGGAATACTGACATCTCTAATGTAAGAAGCTACTCTGAACTTCCAAAGGCTGCACGTCAGTACGTGGAAATAATAGAAGAACTTGTTGGTGTACCTGTCCATTACATTGGTGTCGGGCCTGGACGTGATGCCCTCATTTACAAATAG

Protein Analysis

461

Amino Acids

50.21

Weight (kDa)

7.58

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenylsucc_synt PF00709 54 - 459 5.7e-164 Adenylosuccinate synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1007
AccB7I CCANNNNNTGG 1 cut(s) 454
AccIII TCCGGA 1 cut(s) 543
AciI CCGC 1 cut(s) 1131
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 7 cut(s) 499, 683, 729, 818, 862, 1301, 1332
AfiI CCNNNNNNNGG 2 cut(s) 454, 848
AgsI TTSAA 2 cut(s) 634, 776
AhlI ACTAGT 1 cut(s) 1160
AjiI CACGTC 2 cut(s) 1295, 1364
AjnI CCWGG 3 cut(s) 346, 1189, 1357
AjuI GAANNNNNNNTTGG 2 cut(s) 1308, 1340
AluBI AGCT 5 cut(s) 224, 478, 598, 848, 1269
AluI AGCT 5 cut(s) 224, 478, 598, 848, 1269
Alw21I GWGCWC 2 cut(s) 192, 427
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 2 cut(s) 598, 620
Aor13HI TCCGGA 1 cut(s) 543
AoxI GGCC 5 cut(s) 183, 349, 370, 649, 1355
ApeKI GCWGC 4 cut(s) 23, 620, 1068, 1289
AseI ATTAAT 1 cut(s) 1077
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 4 cut(s) 518, 650, 941, 1355
AsuC2I CCSGG 1 cut(s) 1236
AsuHPI GGTGA 7 cut(s) 266, 419, 575, 905, 922, 986, 1093
AvaII GGWCC 2 cut(s) 518, 941
AxyI CCTNAGG 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 192, 427
BbvI GCAGC 4 cut(s) 35, 607, 1055, 1276
BccI CCATC 4 cut(s) 362, 452, 755, 1233
BceAI ACGGC 1 cut(s) 1183
BciT130I CCWGG 3 cut(s) 348, 1191, 1359
BciVI GTATCC 2 cut(s) 298, 574
BcnI CCSGG 1 cut(s) 1236
BcoDI GTCTC 1 cut(s) 418
BcuI ACTAGT 1 cut(s) 1160
BfaI CTAG 3 cut(s) 531, 1109, 1161
BfoI RGCGCY 1 cut(s) 100
BfuI GTATCC 2 cut(s) 298, 574
BglII AGATCT 1 cut(s) 1195
BisI GCNGC 4 cut(s) 24, 621, 1069, 1290
BlsI GCNGC 4 cut(s) 25, 622, 1070, 1291
Bme1390I CCNGG 4 cut(s) 348, 1191, 1236, 1359
Bme18I GGWCC 2 cut(s) 518, 941
BmgBI CACGTC 2 cut(s) 1295, 1364
BmgT120I GGNCC 4 cut(s) 518, 650, 941, 1355
BmiI GGNNCC 3 cut(s) 652, 708, 1009
BmrFI CCNGG 4 cut(s) 348, 1191, 1236, 1359
BmsI GCATC 6 cut(s) 22, 349, 607, 632, 648, 1357
BpmI CTGGAG 2 cut(s) 77, 1212
BpuEI CTTGAG 3 cut(s) 589, 820, 1229
BpuMI CCSGG 1 cut(s) 1236
BsaAI YACGTR 1 cut(s) 1303
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 1189
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 848
Bse1I ACTGG 3 cut(s) 868, 1021, 1175
Bse21I CCTNAGG 1 cut(s) 286
Bse3DI GCAATG 2 cut(s) 714, 873
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 3 cut(s) 348, 1191, 1359
BseDI CCNNGG 1 cut(s) 1189
BseGI GGATG 2 cut(s) 463, 1244
BseLI CCNNNNNNNGG 2 cut(s) 454, 848
BseMI GCAATG 2 cut(s) 714, 873
BseMII CTCAG 6 cut(s) 27, 147, 300, 605, 687, 744
BseNI ACTGG 3 cut(s) 868, 1021, 1175
BseRI GAGGAG 2 cut(s) 80, 234
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 4 cut(s) 35, 607, 1055, 1276
BsgI GTGCAG 1 cut(s) 1275
BshFI GGCC 5 cut(s) 185, 351, 372, 651, 1357
BshNI GGYRCC 1 cut(s) 1007
BsiHKAI GWGCWC 2 cut(s) 192, 427
BsiSI CCGG 2 cut(s) 544, 1235
BslI CCNNNNNNNGG 2 cut(s) 454, 848
BsmAI GTCTC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 185, 351, 372, 651, 1357
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 3 cut(s) 68, 192, 427
Bsp13I TCCGGA 1 cut(s) 543
Bsp143I GATC 4 cut(s) 418, 601, 895, 1195
BspACI CCGC 1 cut(s) 1131
BspANI GGCC 5 cut(s) 185, 351, 372, 651, 1357
BspCNI CTCAG 6 cut(s) 26, 146, 299, 604, 688, 745
BspEI TCCGGA 1 cut(s) 543
BspLI GGNNCC 3 cut(s) 652, 708, 1009
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 2 cut(s) 714, 873
BsrI ACTGG 3 cut(s) 868, 1021, 1175
BssECI CCNNGG 1 cut(s) 1189
BssMI GATC 4 cut(s) 418, 601, 895, 1195
Bst2UI CCWGG 3 cut(s) 348, 1191, 1359
Bst4CI ACNGT 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 1303
BstC8I GCNNGC 2 cut(s) 68, 480
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 2 cut(s) 463, 1244
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 421, 604, 898, 1198
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 4 cut(s) 418, 601, 895, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1029
BstNI CCWGG 3 cut(s) 348, 1191, 1359
BstPI GGTNACC 1 cut(s) 974
BstSCI CCNGG 4 cut(s) 346, 1189, 1234, 1357
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 35, 607, 1055, 1276
BstX2I RGATCY 2 cut(s) 601, 1195
BstXI CCANNNNNNTGG 2 cut(s) 1079, 1346
BstYI RGATCY 2 cut(s) 601, 1195
Bsu36I CCTNAGG 1 cut(s) 286
BsuI GTATCC 2 cut(s) 298, 574
BsuRI GGCC 5 cut(s) 185, 351, 372, 651, 1357
BtgZI GCGATG 1 cut(s) 135
BtrI CACGTC 2 cut(s) 1295, 1364
BtsCI GGATG 2 cut(s) 463, 1244
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 459, 1055
Cac8I GCNNGC 2 cut(s) 68, 480
CaiI CAGNNNCTG 2 cut(s) 598, 620
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 518, 650, 941, 1355
Csp6I GTAC 7 cut(s) 498, 682, 728, 817, 861, 1300, 1331
CviAII CATG 1 cut(s) 577
CviQI GTAC 7 cut(s) 498, 682, 728, 817, 861, 1300, 1331
DpnI GATC 4 cut(s) 420, 603, 897, 1197
DpnII GATC 4 cut(s) 418, 601, 895, 1195
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 518, 941
Eco57I CTGAAG 1 cut(s) 828
Eco81I CCTNAGG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 974
EcoO65I GGTNACC 1 cut(s) 974
EcoRII CCWGG 3 cut(s) 346, 1189, 1357
FaeI CATG 1 cut(s) 580
FaiI YATR 8 cut(s) 118, 320, 578, 648, 919, 1035, 1049, 1224
FatI CATG 1 cut(s) 576
FauI CCCGC 1 cut(s) 1138
Fnu4HI GCNGC 4 cut(s) 24, 621, 1069, 1290
FokI GGATG 2 cut(s) 470, 1251
Fsp4HI GCNGC 4 cut(s) 24, 621, 1069, 1290
FspBI CTAG 3 cut(s) 531, 1109, 1161
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 24, 621, 1069, 1290
GsuI CTGGAG 2 cut(s) 77, 1212
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 5 cut(s) 185, 351, 372, 651, 1357
HapII CCGG 2 cut(s) 544, 1235
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 377, 470, 630
HpaII CCGG 2 cut(s) 544, 1235
HphI GGTGA 7 cut(s) 266, 419, 575, 905, 922, 986, 1093
Hpy166II GTNNAC 2 cut(s) 175, 1331
Hpy188I TCNGA 7 cut(s) 418, 475, 594, 616, 754, 1123, 1276
Hpy188III TCNNGA 5 cut(s) 467, 544, 627, 998, 1208
Hpy8I GTNNAC 2 cut(s) 175, 1331
Hpy99I CGWCG 1 cut(s) 1032
HpyAV CCTTC 7 cut(s) 248, 396, 721, 770, 852, 989, 1214
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 4 cut(s) 815, 1294, 1302, 1363
HpyCH4V TGCA 8 cut(s) 23, 251, 269, 340, 396, 623, 991, 1292
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1029
HpySE526I ACGT 4 cut(s) 815, 1294, 1302, 1363
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 543
Kzo9I GATC 4 cut(s) 418, 601, 895, 1195
LmnI GCTCC 2 cut(s) 221, 883
Lsp1109I GCAGC 4 cut(s) 35, 607, 1055, 1276
LweI GCATC 6 cut(s) 22, 349, 607, 632, 648, 1357
MaeI CTAG 3 cut(s) 531, 1109, 1161
MaeII ACGT 4 cut(s) 815, 1294, 1302, 1363
MaeIII GTNAC 5 cut(s) 524, 563, 826, 974, 1163
MalI GATC 4 cut(s) 420, 603, 897, 1197
MboI GATC 4 cut(s) 418, 601, 895, 1195
MboII GAAGA 7 cut(s) 335, 596, 680, 769, 1080, 1190, 1328
MflI RGATCY 2 cut(s) 601, 1195
MhlI GDGCHC 3 cut(s) 68, 192, 427
MluCI AATT 1 cut(s) 1134
MmeI TCCRAC 2 cut(s) 777, 883
MroI TCCGGA 1 cut(s) 543
MseI TTAA 3 cut(s) 84, 357, 1077
MspA1I CMGCKG 1 cut(s) 848
MspI CCGG 2 cut(s) 544, 1235
MspR9I CCNGG 4 cut(s) 348, 1191, 1236, 1359
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 3 cut(s) 348, 1191, 1359
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 63, 1029
NciI CCSGG 1 cut(s) 1236
NdeII GATC 4 cut(s) 418, 601, 895, 1195
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 3 cut(s) 652, 708, 1009
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 4 cut(s) 563, 826, 974, 1163
PceI AGGCCT 1 cut(s) 351
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 377, 470, 630
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 4 cut(s) 25, 622, 1070, 1291
Ppu21I YACGTR 1 cut(s) 1303
PshBI ATTAAT 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 346, 1189, 1357
PspEI GGTNACC 1 cut(s) 974
PspGI CCWGG 3 cut(s) 346, 1189, 1357
PspN4I GGNNCC 3 cut(s) 652, 708, 1009
PspPI GGNCC 4 cut(s) 518, 650, 941, 1355
PstNI CAGNNNCTG 2 cut(s) 598, 620
PsuI RGATCY 2 cut(s) 601, 1195
PvuII CAGCTG 1 cut(s) 848
RsaI GTAC 7 cut(s) 499, 683, 729, 818, 862, 1301, 1332
RsaNI GTAC 7 cut(s) 498, 682, 728, 817, 861, 1300, 1331
SaqAI TTAA 3 cut(s) 84, 357, 1077
SatI GCNGC 4 cut(s) 24, 621, 1069, 1290
Sau3AI GATC 4 cut(s) 418, 601, 895, 1195
Sau96I GGNCC 4 cut(s) 518, 650, 941, 1355
ScrFI CCNGG 4 cut(s) 348, 1191, 1236, 1359
SduI GDGCHC 3 cut(s) 68, 192, 427
SfaNI GCATC 6 cut(s) 22, 349, 607, 632, 648, 1357
SinI GGWCC 2 cut(s) 518, 941
SmlI CTYRAG 3 cut(s) 568, 835, 1208
SmoI CTYRAG 3 cut(s) 568, 835, 1208
SpeI ACTAGT 1 cut(s) 1160
Sse9I AATT 1 cut(s) 1134
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 1 cut(s) 1131
SspMI CTAG 3 cut(s) 531, 1109, 1161
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 4 cut(s) 346, 1189, 1234, 1357
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 4 cut(s) 818, 1297, 1305, 1366
TaqI TCGA 3 cut(s) 375, 466, 556
TasI AATT 1 cut(s) 1134
TatI WGTACW 3 cut(s) 681, 727, 860
TfiI GAWTC 3 cut(s) 377, 470, 630
Tru1I TTAA 3 cut(s) 84, 357, 1077
Tru9I TTAA 3 cut(s) 84, 357, 1077
TscAI CASTG 2 cut(s) 459, 1062
TseFI GTSAC 4 cut(s) 563, 826, 974, 1163
TseI GCWGC 4 cut(s) 23, 620, 1068, 1289
Tsp45I GTSAC 4 cut(s) 563, 826, 974, 1163
TspDTI ATGAA 5 cut(s) 17, 481, 703, 756, 1239
TspRI CASTG 2 cut(s) 459, 1062
Van91I CCANNNNNTGG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 518, 941
VspI ATTAAT 1 cut(s) 1077
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 3 cut(s) 531, 1109, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.