Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

14039298 .. 14042119

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGGCTTTGATATAATGCCGGAGATTCACAGAGAAGAGCCACACAGCATTGTCTACAGAGGCCTCTTCCGCTACCTCAACAACTTCGTCCTCATCAAGAAGTTCCCCTACAACCATGCCTTTCCCGACGGCGTACCTTGCTCCCTCTCCCGCGAGCTTCTACTCTACCAGAAACTTCCTCCATCGGATTACGTCATCACACGCTTCGGCGTGGTCAGCCCCGTCGAGGACGGCCACCGCGTCCACTACCTTATCTACGAGCCTTTCTTCTACGATCTCGCCTTCATCGCCGTCAGGCCCTTGCCGCACACTGTGTTCAAGAAGCTTCTGGTGCAGCTCCTCAGGTGCGTCAACCACTGTCACAGTAACGGCGTCATCCACCGGAACCTGAACCCTAGGACTCTGCTTCTTGACACGACTCAAAAGATCCTCAAGATCGGAGATGCGATCGGTCATTCTTTCACTTTCGTCGGCGAAACTGAGCACCCGGGGACAGTCACTCTCGCTTACCAGGCGCCGGAGGTTTTGCTTGGAGCCACCGATTACTCAACTCCGGTGGATATGTGGGCCGTCGGATGCATCTTCGCTGAGATGTTGACTGGGAATGTACTCTTTGTCCGATTCGGTGATGATCCTGAAGAAGCTAATAAGCAGCAGTTGTATGAGATTTTCAGGCAGCTAGGAAAACCGACGTTGGATCAGTGGCCAGGACTCACTGATTTGCCGGCTTGGAAGAGCTACCAAGAATGGGAAGGAGGGCCAAAGATGAAAGCTCGTTTCTATGAAGGCGGTTTGCCACAAGATCTGGCTACAGTTGGGTTGGTAGAAGCTGGAGCTGACCTTCTATCGAAAATGCTCTCTTTTGATCCACATCAAAGAATCACAGCTGAAGCAGCACTGAAGCACCCCTATTTGTGGAAATATTCTGGATATCAGCGTAACGATGGAAGACTTGTTATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

323

Amino Acids

36.75

Weight (kDa)

6.22

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 233	8.5e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	108 - 202	4.2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	2 cut(s)	156, 243
AciI	CCGC	5 cut(s)	73, 154, 241, 308, 792
AclWI	GGATC	4 cut(s)	424, 629, 708, 863
AcoI	YGGCCR	2 cut(s)	235, 707
AcuI	CTGAAG	3 cut(s)	660, 912, 923
AcyI	GRCGYC	2 cut(s)	375, 518
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	2 cut(s)	138, 612
AfiI	CCNNNNNNNGG	4 cut(s)	229, 520, 751, 918
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	513, 709
Alw21I	GWGCWC	1 cut(s)	489
AlwI	GGATC	4 cut(s)	424, 629, 708, 863
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	6 cut(s)	64, 235, 299, 570, 707, 761
ApeKI	GCWGC	4 cut(s)	337, 655, 679, 896
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	3 cut(s)	300, 570, 761
AsuC2I	CCSGG	2 cut(s)	491, 492
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	490
AvrII	CCTAGG	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbsI	GAAGAC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	349, 667, 691, 908
BccI	CCATC	2 cut(s)	193, 941
BceAI	ACGGC	5 cut(s)	148, 250, 278, 388, 557
BciT130I	CCWGG	2 cut(s)	515, 711
BcnI	CCSGG	2 cut(s)	491, 492
BfaI	CTAG	2 cut(s)	399, 683
BfmI	CTRYAG	2 cut(s)	58, 813
BfoI	RGCGCY	1 cut(s)	521
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	5 cut(s)	308, 338, 656, 680, 897
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	5 cut(s)	309, 339, 657, 681, 898
Bme1390I	CCNGG	4 cut(s)	491, 492, 515, 711
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	300, 570, 761
BmiI	GGNNCC	3 cut(s)	389, 519, 538
BmrFI	CCNGG	4 cut(s)	491, 492, 515, 711
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	3 cut(s)	436, 569, 591
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	958
BpmI	CTGGAG	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	491, 492
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	2 cut(s)	375, 518
BsaJI	CCNNGG	3 cut(s)	398, 490, 491
BsaWI	WCCGGW	2 cut(s)	384, 556
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 520, 751, 918
Bse118I	RCCGGY	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	607
Bse21I	CCTNAGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	2 cut(s)	515, 711
BseDI	CCNNGG	3 cut(s)	398, 490, 491
BseGI	GGATG	2 cut(s)	378, 584
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	4 cut(s)	229, 520, 751, 918
BseMII	CTCAG	3 cut(s)	358, 474, 582
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	349, 667, 691, 908
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	156, 243
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	6 cut(s)	66, 237, 301, 572, 709, 763
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	6 cut(s)	23, 385, 491, 521, 557, 728
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	4 cut(s)	229, 520, 751, 918
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	6 cut(s)	66, 237, 301, 572, 709, 763
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
BspACI	CCGC	5 cut(s)	73, 154, 241, 308, 792
BspANI	GGCC	6 cut(s)	66, 237, 301, 572, 709, 763
BspCNI	CTCAG	3 cut(s)	357, 475, 583
BspFNI	CGCG	2 cut(s)	156, 243
BspLI	GGNNCC	3 cut(s)	389, 519, 538
BspPI	GGATC	4 cut(s)	424, 629, 708, 863
BspQI	GCTCTTC	2 cut(s)	33, 731
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	3 cut(s)	398, 490, 491
BssMI	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
BssNI	GRCGYC	2 cut(s)	375, 518
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	515, 711
Bst4CI	ACNGT	5 cut(s)	316, 362, 368, 499, 817
Bst6I	CTCTTC	3 cut(s)	33, 74, 731
BstACI	GRCGYC	2 cut(s)	375, 518
BstC8I	GCNNGC	2 cut(s)	158, 729
BstDEI	CTNAG	3 cut(s)	344, 483, 591
BstF5I	GGATG	2 cut(s)	378, 584
BstFNI	CGCG	2 cut(s)	156, 243
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	8 cut(s)	280, 432, 441, 453, 637, 703, 808, 871
BstMBI	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	8 cut(s)	72, 141, 219, 290, 307, 334, 515, 896
BstNI	CCWGG	2 cut(s)	515, 711
BstSCI	CCNGG	4 cut(s)	489, 490, 513, 709
BstSFI	CTRYAG	2 cut(s)	58, 813
BstUI	CGCG	2 cut(s)	156, 243
BstV1I	GCAGC	4 cut(s)	349, 667, 691, 908
BstV2I	GAAGAC	1 cut(s)	958
BstX2I	RGATCY	2 cut(s)	429, 805
BstYI	RGATCY	2 cut(s)	429, 805
Bsu36I	CCTNAGG	1 cut(s)	344
BsuRI	GGCC	6 cut(s)	66, 237, 301, 572, 709, 763
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	378, 584
BtsIMutI	CAGTG	5 cut(s)	312, 358, 710, 717, 899
Cac8I	GCNNGC	2 cut(s)	158, 729
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	3 cut(s)	300, 570, 761
Cfr9I	CCCGGG	1 cut(s)	490
CseI	GACGC	3 cut(s)	232, 340, 364
Csp6I	GTAC	2 cut(s)	137, 611
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	2 cut(s)	137, 611
DdeI	CTNAG	3 cut(s)	344, 483, 591
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	8 cut(s)	279, 431, 440, 452, 636, 702, 807, 870
DpnII	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	235, 707
Eam1104I	CTCTTC	3 cut(s)	33, 74, 731
EarI	CTCTTC	3 cut(s)	33, 74, 731
Eco130I	CCWWGG	1 cut(s)	398
Eco147I	AGGCCT	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	935
Eco57I	CTGAAG	3 cut(s)	660, 912, 923
Eco81I	CCTNAGG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	513, 709
EcoRV	GATATC	1 cut(s)	935
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	584
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	17, 120, 566, 666, 786
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	118
FauI	CCCGC	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	308, 338, 656, 680, 897
FokI	GGATG	2 cut(s)	365, 591
Fsp4HI	GCNGC	5 cut(s)	308, 338, 656, 680, 897
FspBI	CTAG	2 cut(s)	399, 683
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	5 cut(s)	308, 338, 656, 680, 897
GsuI	CTGGAG	1 cut(s)	855
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	6 cut(s)	66, 237, 301, 572, 709, 763
HapII	CCGG	6 cut(s)	23, 385, 491, 521, 557, 728
HgaI	GACGC	3 cut(s)	232, 340, 364
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	2 cut(s)	375, 518
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	2 cut(s)	355, 600
HindII	GTYRAC	2 cut(s)	355, 600
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	6 cut(s)	28, 403, 421, 624, 714, 882
HpaII	CCGG	6 cut(s)	23, 385, 491, 521, 557, 728
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	4 cut(s)	58, 247, 355, 600
Hpy188I	TCNGA	4 cut(s)	190, 443, 578, 623
Hpy188III	TCNNGA	7 cut(s)	100, 128, 322, 413, 436, 638, 930
Hpy8I	GTNNAC	4 cut(s)	58, 247, 355, 600
Hpy99I	CGWCG	5 cut(s)	134, 230, 476, 578, 697
HpyAV	CCTTC	4 cut(s)	295, 749, 782, 854
HpyCH4III	ACNGT	5 cut(s)	316, 362, 368, 499, 817
HpyCH4IV	ACGT	2 cut(s)	195, 695
HpyCH4V	TGCA	2 cut(s)	337, 582
HpyF10VI	GCNNNNNNNGC	8 cut(s)	72, 141, 219, 290, 307, 334, 515, 896
HpyF3I	CTNAG	3 cut(s)	344, 483, 591
HpySE526I	ACGT	2 cut(s)	195, 695
Hsp92I	GRCGYC	2 cut(s)	375, 518
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	518
KasI	GGCGCC	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	727
KroNI	GCCGGC	1 cut(s)	729
Kzo9I	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
LguI	GCTCTTC	2 cut(s)	33, 731
LmnI	GCTCC	4 cut(s)	149, 345, 536, 836
Lsp1109I	GCAGC	4 cut(s)	349, 667, 691, 908
LweI	GCATC	3 cut(s)	436, 569, 591
MaeI	CTAG	2 cut(s)	399, 683
MaeII	ACGT	2 cut(s)	195, 695
MaeIII	GTNAC	4 cut(s)	362, 368, 499, 941
MalI	GATC	8 cut(s)	279, 431, 440, 452, 636, 702, 807, 870
MboI	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
MboII	GAAGA	7 cut(s)	50, 61, 262, 577, 653, 748, 963
MflI	RGATCY	2 cut(s)	429, 805
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	709
MluNI	TGGCCA	1 cut(s)	709
Mly113I	GGCGCC	1 cut(s)	518
MlyI	GAGTC	3 cut(s)	397, 415, 708
MmeI	TCCRAC	2 cut(s)	556, 678
Mox20I	TGGCCA	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	584
MroNI	GCCGGC	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	709
MseI	TTAA	1 cut(s)	963
Msp20I	TGGCCA	1 cut(s)	709
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	6 cut(s)	23, 385, 491, 521, 557, 728
MspR9I	CCNGG	4 cut(s)	491, 492, 515, 711
MvaI	CCWGG	2 cut(s)	515, 711
MvnI	CGCG	2 cut(s)	156, 243
MwoI	GCNNNNNNNGC	8 cut(s)	72, 141, 219, 290, 307, 334, 515, 896
NaeI	GCCGGC	1 cut(s)	729
NarI	GGCGCC	1 cut(s)	518
NciI	CCSGG	2 cut(s)	491, 492
NdeII	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
NgoMIV	GCCGGC	1 cut(s)	727
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	3 cut(s)	389, 519, 538
NmuCI	GTSAC	2 cut(s)	362, 499
NsiI	ATGCAT	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	2 cut(s)	33, 731
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	28, 624, 882
PkrI	GCNGC	5 cut(s)	309, 339, 657, 681, 898
Ple19I	CGATCG	1 cut(s)	453
PleI	GAGTC	3 cut(s)	397, 415, 708
PluTI	GGCGCC	1 cut(s)	521
PpsI	GAGTC	3 cut(s)	397, 415, 708
Psp6I	CCWGG	2 cut(s)	513, 709
PspGI	CCWGG	2 cut(s)	513, 709
PspN4I	GGNNCC	3 cut(s)	389, 519, 538
PspPI	GGNCC	3 cut(s)	300, 570, 761
PsuI	RGATCY	2 cut(s)	429, 805
PvuI	CGATCG	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	138, 612
RsaNI	GTAC	2 cut(s)	137, 611
SapI	GCTCTTC	2 cut(s)	33, 731
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	5 cut(s)	308, 338, 656, 680, 897
Sau3AI	GATC	8 cut(s)	277, 429, 438, 450, 634, 700, 805, 868
Sau96I	GGNCC	3 cut(s)	300, 570, 761
SchI	GAGTC	3 cut(s)	397, 415, 708
ScrFI	CCNGG	4 cut(s)	491, 492, 515, 711
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	3 cut(s)	436, 569, 591
SfcI	CTRYAG	2 cut(s)	58, 813
SfoI	GGCGCC	1 cut(s)	519
SmaI	CCCGGG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	5 cut(s)	73, 154, 241, 308, 792
SspDI	GGCGCC	1 cut(s)	517
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	2 cut(s)	399, 683
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	489, 490, 513, 709
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	5 cut(s)	316, 362, 368, 499, 817
TaiI	ACGT	2 cut(s)	198, 698
TaqI	TCGA	2 cut(s)	228, 851
TaqII	GACCGA	1 cut(s)	443
TatI	WGTACW	1 cut(s)	610
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	28, 624, 882
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	5 cut(s)	319, 365, 710, 724, 906
TseFI	GTSAC	2 cut(s)	362, 499
TseI	GCWGC	4 cut(s)	337, 655, 679, 896
Tsp45I	GTSAC	2 cut(s)	362, 499
TspDTI	ATGAA	3 cut(s)	277, 785, 801
TspMI	CCCGGG	1 cut(s)	490
TspRI	CASTG	5 cut(s)	319, 365, 710, 724, 906
XmaI	CCCGGG	1 cut(s)	490
XmaJI	CCTAGG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	2 cut(s)	399, 683
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.