Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Reverse (-)

244869 .. 249200

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ctgttcaaagctcacaatcaagattggtcagaggagaaacaacagagcctcaagatcggcgatgggatcagtcagccttttgctttctgctacgagacttttgtgccggaggcggtcactctctcttaccaagcgcaggaggttttgctggggtctgtcgatttctcgactccggcggacatttgggccgtcggctgcatcttcgctgagatggtgactgggggtgtactacagctaggaaaaccgatgttgaatcagtgtccaggactcacttcgttgccggcttgggagacctaccaagaatgggaaggggaaaagatgaaagatcggttctatttggcaggagatttgccatcggatctgctggtagctacagtttatttggaacaagatggagttgaacttctatcgatcattggtttcttagatcagttgaacatcactatagaccccaatgattatctacggtacaccaccagtgtcgacataagtctatctgaatcatttctgcgtggtggtaagcatccaattctcaccatgttgtcagttgggaacgctatgcatgtctttgtcaatgaccagctctcaggatcaacttatgggactctgcaagaccagagattcacttttacaggagatgtaaacatgcatgctggtgtgaataaattttcgcgtctaagtgtagctgttggattaccgttcttatcaaatgcagataatattaacgtgtcctatgtattgtatgtattctttgttcaagttgcagactttggacttgccaagtttgccttagatacagatactcatgtctccacaagggttatgggaacttttggatatttggctcctgaatatgcatccagtggaaagctcagtgataagtcagatgtcttctcattcggagtcgtgctattggaattcattactggacgccaacccattgataaaactcattccttcactgatgacagcatggttgagtgggccaattttgatgcacctgaaggggacgagcctttgtctttggacatggggagcatggggaagggtgaagtacagataacattggaagatactggattgttcatgctaatggtaactgcagcgcatgcggttattttggtacattcaggattaacaagtgccaatttggttgtctccaaccgactcaacaatggtatgtatcatgttcctcggtcttggctcaagccaccccaaaatctgttggtggtatatgaggaggttgctggcgatgttacaaagattgatattctgaaagtcacccacgtgttgagaaatggcagaccaagaatcgaggcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

441

Amino Acids

48.62

Weight (kDa)

4.63

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	673
AciI	CCGC	3 cut(s)	113, 176, 1112
AclWI	GGATC	3 cut(s)	74, 366, 598
AcsI	RAATTY	2 cut(s)	665, 917
AcuI	CTGAAG	1 cut(s)	1023
AcvI	CACGTG	1 cut(s)	1288
AcyI	GRCGYC	1 cut(s)	931
AfaI	GTAC	4 cut(s)	228, 470, 1056, 1125
AfiI	CCNNNNNNNGG	2 cut(s)	136, 304
AflIII	ACRYGT	2 cut(s)	726, 1287
AgsI	TTSAA	5 cut(s)	7, 253, 401, 436, 758
AjnI	CCWGG	1 cut(s)	262
AleI	CACNNNNGTG	1 cut(s)	1286
AluBI	AGCT	6 cut(s)	11, 235, 371, 583, 686, 871
AluI	AGCT	6 cut(s)	11, 235, 371, 583, 686, 871
Alw26I	GTCTC	4 cut(s)	89, 284, 814, 1162
AlwI	GGATC	3 cut(s)	74, 366, 598
AoxI	GGCC	2 cut(s)	186, 984
ApeKI	GCWGC	2 cut(s)	195, 1103
ApoI	RAATTY	2 cut(s)	665, 917
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	136, 1108
AspS9I	GGNCC	2 cut(s)	186, 984
AsuHPI	GGTGA	4 cut(s)	226, 526, 1061, 1273
BaeI	ACNNNNGTAYC	2 cut(s)	792, 825
BbrPI	CACGTG	1 cut(s)	1288
BbsI	GAAGAC	1 cut(s)	883
BbvI	GCAGC	2 cut(s)	182, 1115
BccI	CCATC	4 cut(s)	56, 205, 361, 386
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	4 cut(s)	89, 284, 814, 1162
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	4 cut(s)	230, 372, 444, 1101
BisI	GCNGC	2 cut(s)	196, 1104
BlsI	GCNGC	2 cut(s)	197, 1105
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	186, 984
BmiI	GGNNCC	1 cut(s)	846
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	207, 532, 866, 985
BmuI	ACTGGG	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	883
BpuEI	CTTGAG	2 cut(s)	35, 1190
Bsa29I	ATCGAT	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	1288
BsaHI	GRCGYC	1 cut(s)	931
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	1193
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 304
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	5 cut(s)	223, 477, 861, 931, 1081
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	1193
BseGI	GGATG	2 cut(s)	523, 857
BseLI	CCNNNNNNNGG	2 cut(s)	136, 304
BseMII	CTCAG	3 cut(s)	198, 600, 886
BseNI	ACTGG	5 cut(s)	223, 477, 861, 931, 1081
BseRI	GAGGAG	2 cut(s)	47, 1253
BseXI	GCAGC	2 cut(s)	182, 1115
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	2 cut(s)	188, 986
BshVI	ATCGAT	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	107, 173, 281
BslFI	GGGAC	2 cut(s)	616, 1022
BslI	CCNNNNNNNGG	2 cut(s)	136, 304
BsmAI	GTCTC	4 cut(s)	89, 284, 814, 1162
BsmFI	GGGAC	2 cut(s)	616, 1022
BsnI	GGCC	2 cut(s)	188, 986
Bso31I	GGTCTC	1 cut(s)	284
Bsp143I	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
BspACI	CCGC	3 cut(s)	113, 176, 1112
BspANI	GGCC	2 cut(s)	188, 986
BspCNI	CTCAG	3 cut(s)	199, 599, 885
BspDI	ATCGAT	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	846
BspMAI	CTGCAG	1 cut(s)	1105
BspPI	GGATC	3 cut(s)	74, 366, 598
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	5 cut(s)	223, 477, 861, 931, 1081
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	1193
BssMI	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
BssNI	GRCGYC	1 cut(s)	931
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	376, 468, 699
BstACI	GRCGYC	1 cut(s)	931
BstAPI	GCANNNNNTGC	1 cut(s)	1109
BstBAI	YACGTR	1 cut(s)	1288
BstC8I	GCNNGC	4 cut(s)	282, 651, 1110, 1249
BstDEI	CTNAG	6 cut(s)	207, 424, 586, 677, 790, 872
BstF5I	GGATG	2 cut(s)	523, 857
BstFNI	CGCG	1 cut(s)	673
BstHHI	GCGC	2 cut(s)	136, 1108
BstKTI	GATC	7 cut(s)	57, 69, 328, 361, 414, 430, 593
BstMAI	GTCTC	4 cut(s)	89, 284, 814, 1162
BstMBI	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 1109
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	4 cut(s)	566, 649, 653, 1112
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	4 cut(s)	230, 372, 444, 1101
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	182, 1115
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	188, 986
BsuTUI	ATCGAT	1 cut(s)	410
BtgZI	GCGATG	2 cut(s)	75, 1266
BtsCI	GGATG	2 cut(s)	523, 857
BtsIMutI	CAGTG	5 cut(s)	263, 484, 868, 880, 960
Cac8I	GCNNGC	4 cut(s)	282, 651, 1110, 1249
CfoI	GCGC	2 cut(s)	136, 1108
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	186, 984
ClaI	ATCGAT	1 cut(s)	410
CseI	GACGC	2 cut(s)	662, 939
Csp6I	GTAC	4 cut(s)	227, 469, 1055, 1124
CviQI	GTAC	4 cut(s)	227, 469, 1055, 1124
DdeI	CTNAG	6 cut(s)	207, 424, 586, 677, 790, 872
DpnI	GATC	7 cut(s)	56, 68, 327, 360, 413, 429, 592
DpnII	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
EciI	GGCGGA	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	1023
Eco72I	CACGTG	1 cut(s)	1288
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	3 cut(s)	564, 651, 859
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	2 cut(s)	616, 1022
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	196, 1104
FokI	GGATG	2 cut(s)	510, 844
Fsp4HI	GCNGC	2 cut(s)	196, 1104
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	135, 1107
GluI	GCNGC	2 cut(s)	196, 1104
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	188, 986
HapII	CCGG	3 cut(s)	107, 173, 281
HgaI	GACGC	2 cut(s)	662, 939
HhaI	GCGC	2 cut(s)	136, 1108
Hin1I	GRCGYC	1 cut(s)	931
Hin6I	GCGC	2 cut(s)	134, 1106
HinP1I	GCGC	2 cut(s)	134, 1106
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	9 cut(s)	169, 253, 267, 500, 604, 621, 903, 1167, 1311
HpaII	CCGG	3 cut(s)	107, 173, 281
HphI	GGTGA	4 cut(s)	226, 526, 1061, 1273
Hpy166II	GTNNAC	4 cut(s)	227, 471, 484, 643
Hpy188I	TCNGA	6 cut(s)	31, 358, 499, 886, 902, 1275
Hpy188III	TCNNGA	6 cut(s)	20, 52, 166, 588, 848, 1131
Hpy8I	GTNNAC	4 cut(s)	227, 471, 484, 643
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	302, 967, 998, 1039
HpyCH4III	ACNGT	3 cut(s)	376, 468, 699
HpyCH4IV	ACGT	2 cut(s)	726, 1287
HpyCH4V	TGCA	9 cut(s)	198, 562, 610, 649, 713, 764, 857, 998, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 1109
HpyF3I	CTNAG	6 cut(s)	207, 424, 586, 677, 790, 872
HpySE526I	ACGT	2 cut(s)	726, 1287
Hsp92I	GRCGYC	1 cut(s)	931
HspAI	GCGC	2 cut(s)	134, 1106
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
Kzo9I	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
LmnI	GCTCC	2 cut(s)	850, 1035
Lsp1109I	GCAGC	2 cut(s)	182, 1115
LweI	GCATC	4 cut(s)	207, 532, 866, 985
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	726, 1287
MaeIII	GTNAC	5 cut(s)	115, 214, 1096, 1255, 1279
MalI	GATC	7 cut(s)	56, 68, 327, 360, 413, 429, 592
MboI	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
MboII	GAAGA	3 cut(s)	193, 883, 1082
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	528, 665, 917, 988, 1147
MlyI	GAGTC	5 cut(s)	163, 261, 598, 912, 1161
MmeI	TCCRAC	2 cut(s)	670, 1185
MnlI	CCTC	8 cut(s)	25, 59, 103, 133, 1203, 1231, 1234, 1309
Mph1103I	ATGCAT	3 cut(s)	564, 651, 859
MroNI	GCCGGC	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	2 cut(s)	723, 1136
MslI	CAYNNNNRTG	3 cut(s)	654, 1091, 1286
MspI	CCGG	3 cut(s)	107, 173, 281
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	2 cut(s)	785, 1109
NaeI	GCCGGC	1 cut(s)	282
NdeII	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
NgoMIV	GCCGGC	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	846
NmuCI	GTSAC	3 cut(s)	115, 214, 1279
NsiI	ATGCAT	3 cut(s)	564, 651, 859
NspI	RCATGY	4 cut(s)	566, 649, 653, 1112
OliI	CACNNNNGTG	1 cut(s)	1286
PaeI	GCATGC	2 cut(s)	653, 1112
PdiI	GCCGGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	253, 500, 621, 1311
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	197, 1105
PleI	GAGTC	5 cut(s)	163, 261, 598, 911, 1161
PmaCI	CACGTG	1 cut(s)	1288
PmlI	CACGTG	1 cut(s)	1288
PpsI	GAGTC	5 cut(s)	163, 261, 598, 911, 1161
Ppu21I	YACGTR	1 cut(s)	1288
PshAI	GACNNNNGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	1288
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	846
PspPI	GGNCC	2 cut(s)	186, 984
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstI	CTGCAG	1 cut(s)	1105
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	4 cut(s)	228, 470, 1056, 1125
RsaNI	GTAC	4 cut(s)	227, 469, 1055, 1124
RseI	CAYNNNNRTG	3 cut(s)	654, 1091, 1286
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	723, 1136
SatI	GCNGC	2 cut(s)	196, 1104
Sau3AI	GATC	7 cut(s)	54, 66, 325, 358, 411, 427, 590
Sau96I	GGNCC	2 cut(s)	186, 984
SchI	GAGTC	5 cut(s)	163, 261, 598, 912, 1161
ScrFI	CCNGG	1 cut(s)	264
SfaNI	GCATC	4 cut(s)	207, 532, 866, 985
SfcI	CTRYAG	4 cut(s)	230, 372, 444, 1101
SmiMI	CAYNNNNRTG	3 cut(s)	654, 1091, 1286
SmlI	CTYRAG	2 cut(s)	50, 1205
SmoI	CTYRAG	2 cut(s)	50, 1205
SphI	GCATGC	2 cut(s)	653, 1112
Sse9I	AATT	5 cut(s)	528, 665, 917, 988, 1147
SsiI	CCGC	3 cut(s)	113, 176, 1112
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	376, 468, 699
TaiI	ACGT	2 cut(s)	729, 1290
TaqI	TCGA	5 cut(s)	159, 167, 410, 483, 1314
TaqII	GACCGA	1 cut(s)	1185
TasI	AATT	5 cut(s)	528, 665, 917, 988, 1147
TatI	WGTACW	2 cut(s)	226, 1054
TfiI	GAWTC	4 cut(s)	253, 500, 621, 1311
Tru1I	TTAA	2 cut(s)	723, 1136
Tru9I	TTAA	2 cut(s)	723, 1136
TscAI	CASTG	5 cut(s)	263, 484, 868, 880, 967
TseFI	GTSAC	3 cut(s)	115, 214, 1279
TseI	GCWGC	2 cut(s)	195, 1103
Tsp45I	GTSAC	3 cut(s)	115, 214, 1279
TspDTI	ATGAA	3 cut(s)	335, 910, 1075
TspRI	CASTG	5 cut(s)	263, 484, 868, 880, 967
XapI	RAATTY	2 cut(s)	665, 917
XceI	RCATGY	4 cut(s)	566, 649, 653, 1112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	236
Zsp2I	ATGCAT	3 cut(s)	564, 651, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.