Rmu_co8468977.1_g000001

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8468977.1
OG0003461
Physical Location & Seq
Forward (+)
1 .. 803
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8468977.1_g000001.1.cds

Sequence Viewer

Length: 557 bp
tggtcaagaagcttctcttccagctcctcaagggcgtcgaccactgtcaccgtaacggcatcatccaccggaacctgaaccccaagaatctgctgcttgacgagaaacaacagagcctcaagatcggcgatgggatcagtcagtcttttgctttctgctacgagacttttttgccggagacggtcactctctcttaccaggcgccggaggttttgctggggtccaccgatttctcgactccggcggacatttgggccgtcggctgcatcttcgctgagatggtgactggggatgtactgtttgtcggaatcggtgatgatcctaatcaagctgataagcagcaattgcgtgagattttcagacagctaggaaaaccgatgttgaatcagtgtccaggactcacttctttgccggcttgggagacctaccaagaatgggaaggggaaaagatgaaagctcggttctattcggcaggagatttgccatcggatctgctggtagctacagtttctttggaacaagatggagctgaacttctatcagtaagtgttctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

184

Amino Acids

20.43

Weight (kDa)

4.74

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 244
AclWI GGATC 3 cut(s) 142, 313, 497
AcyI GRCGYC 2 cut(s) 35, 202
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 204, 435
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 2 cut(s) 197, 393
AluBI AGCT 7 cut(s) 12, 24, 331, 366, 457, 502, 529
AluI AGCT 7 cut(s) 12, 24, 331, 366, 457, 502, 529
Alw26I GTCTC 3 cut(s) 157, 172, 415
AlwI GGATC 3 cut(s) 142, 313, 497
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 3 cut(s) 93, 263, 339
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 221, 254
AsuHPI GGTGA 3 cut(s) 40, 294, 325
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 80, 250, 351
BccI CCATC 4 cut(s) 124, 273, 492, 517
BceAI ACGGC 2 cut(s) 72, 241
BciT130I CCWGG 2 cut(s) 199, 395
BcoDI GTCTC 3 cut(s) 157, 172, 415
BfaI CTAG 1 cut(s) 367
BfmI CTRYAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 3 cut(s) 94, 264, 340
BlsI GCNGC 3 cut(s) 95, 265, 341
Bme1390I CCNGG 2 cut(s) 199, 395
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 221, 254
BmiI GGNNCC 3 cut(s) 73, 203, 222
BmrFI CCNGG 2 cut(s) 199, 395
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 68, 275
BmuI ACTGGG 1 cut(s) 296
BoxI GACNNNNGTC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 13, 103
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 2 cut(s) 35, 202
BsaI GGTCTC 1 cut(s) 415
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 435
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 2 cut(s) 199, 395
BseGI GGATG 2 cut(s) 62, 297
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 204, 435
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 80, 250, 351
BseYI CCCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 201
BsiSI CCGG 5 cut(s) 69, 175, 205, 241, 412
BslI CCNNNNNNNGG 2 cut(s) 204, 435
BsmAI GTCTC 3 cut(s) 157, 172, 415
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 415
Bsp143I GATC 4 cut(s) 122, 134, 318, 489
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 73, 203, 222
BspPI GGATC 3 cut(s) 142, 313, 497
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 411
BssMI GATC 4 cut(s) 122, 134, 318, 489
BssNI GRCGYC 2 cut(s) 35, 202
Bst2UI CCWGG 2 cut(s) 199, 395
Bst4CI ACNGT 5 cut(s) 46, 52, 183, 299, 507
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 2 cut(s) 35, 202
BstAPI GCANNNNNTGC 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 62, 297
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 4 cut(s) 125, 137, 321, 492
BstMAI GTCTC 3 cut(s) 157, 172, 415
BstMBI GATC 4 cut(s) 122, 134, 318, 489
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 2 cut(s) 199, 395
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 197, 393
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 80, 250, 351
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 62, 297
BtsIMutI CAGTG 2 cut(s) 42, 394
Cac8I GCNNGC 1 cut(s) 413
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 221, 254
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 275
DinI GGCGCC 1 cut(s) 203
DpnI GATC 4 cut(s) 124, 136, 320, 491
DpnII GATC 4 cut(s) 122, 134, 318, 489
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 197, 393
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 172
FalI AAGNNNNNCTT 1 cut(s) 33
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 94, 264, 340
FokI GGATG 2 cut(s) 49, 304
Fsp4HI GCNGC 3 cut(s) 94, 264, 340
FspBI CTAG 1 cut(s) 367
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 94, 264, 340
GsaI CCCAGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 1 cut(s) 256
HapII CCGG 5 cut(s) 69, 175, 205, 241, 412
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 2 cut(s) 35, 202
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 5 cut(s) 87, 237, 308, 384, 398
HpaII CCGG 5 cut(s) 69, 175, 205, 241, 412
HphI GGTGA 3 cut(s) 40, 294, 325
Hpy166II GTNNAC 2 cut(s) 39, 224
Hpy188I TCNGA 3 cut(s) 307, 361, 489
Hpy188III TCNNGA 3 cut(s) 6, 120, 234
Hpy8I GTNNAC 2 cut(s) 39, 224
Hpy99I CGWCG 2 cut(s) 40, 262
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 5 cut(s) 46, 52, 183, 299, 507
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 275
Hsp92I GRCGYC 2 cut(s) 35, 202
HspAI GCGC 1 cut(s) 202
KasI GGCGCC 1 cut(s) 201
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
Kzo9I GATC 4 cut(s) 122, 134, 318, 489
LmnI GCTCC 2 cut(s) 29, 526
Lsp1109I GCAGC 3 cut(s) 80, 250, 351
LweI GCATC 2 cut(s) 68, 275
MaeI CTAG 1 cut(s) 367
MaeIII GTNAC 4 cut(s) 46, 52, 183, 282
MalI GATC 4 cut(s) 124, 136, 320, 491
MboI GATC 4 cut(s) 122, 134, 318, 489
MboII GAAGA 2 cut(s) 9, 261
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 489
MluCI AATT 1 cut(s) 343
Mly113I GGCGCC 1 cut(s) 202
MlyI GAGTC 2 cut(s) 231, 392
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 3 cut(s) 37, 127, 201
MroNI GCCGGC 1 cut(s) 411
MseI TTAA 1 cut(s) 555
MspI CCGG 5 cut(s) 69, 175, 205, 241, 412
MspR9I CCNGG 2 cut(s) 199, 395
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 2 cut(s) 199, 395
MwoI GCNNNNNNNGC 1 cut(s) 345
NaeI GCCGGC 1 cut(s) 413
NarI GGCGCC 1 cut(s) 202
NdeII GATC 4 cut(s) 122, 134, 318, 489
NgoMIV GCCGGC 1 cut(s) 411
NlaIV GGNNCC 3 cut(s) 73, 203, 222
NmuCI GTSAC 3 cut(s) 46, 183, 282
PdiI GCCGGC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 87, 308, 384
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 95, 265, 341
PleI GAGTC 2 cut(s) 231, 392
PluTI GGCGCC 1 cut(s) 205
PpsI GAGTC 2 cut(s) 231, 392
PshAI GACNNNNGTC 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 197, 393
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 2 cut(s) 197, 393
PspN4I GGNNCC 3 cut(s) 73, 203, 222
PspPI GGNCC 2 cut(s) 221, 254
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SalI GTCGAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 3 cut(s) 94, 264, 340
Sau3AI GATC 4 cut(s) 122, 134, 318, 489
Sau96I GGNCC 2 cut(s) 221, 254
SchI GAGTC 2 cut(s) 231, 392
ScrFI CCNGG 2 cut(s) 199, 395
SfaNI GCATC 2 cut(s) 68, 275
SfcI CTRYAG 1 cut(s) 503
SfoI GGCGCC 1 cut(s) 203
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 28, 118
SmoI CTYRAG 2 cut(s) 28, 118
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 244
SspDI GGCGCC 1 cut(s) 201
SspMI CTAG 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 197, 393
TaaI ACNGT 5 cut(s) 46, 52, 183, 299, 507
TaqI TCGA 2 cut(s) 38, 235
TasI AATT 1 cut(s) 343
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 3 cut(s) 87, 308, 384
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 2 cut(s) 49, 394
TseFI GTSAC 3 cut(s) 46, 183, 282
TseI GCWGC 3 cut(s) 93, 263, 339
Tsp45I GTSAC 3 cut(s) 46, 183, 282
TspDTI ATGAA 1 cut(s) 466
TspRI CASTG 2 cut(s) 49, 394
VpaK11BI GGWCC 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.