Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

67950682 .. 67955556

Gene Structure 4875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG469000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGACTGGGGGTGTACTGTTTGTCGGAATCGGTGATGATCCTAATCAAGCTGATAAGCAGCAATTGCGAGAGATTTTCAGACAGCTAGGAAAACCGATGTTGAATCAGTGTCCAGGACTCACTTCGTTTCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGCTCGGTTCTATTTGGCAGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTATTTGGAACAAGATGGAGTTGAACTTCTATCAGTAAGTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

92

Amino Acids

10.26

Weight (kDa)

4.36

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	35, 219
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	106, 254
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	4 cut(s)	53, 88, 179, 224
AluI	AGCT	4 cut(s)	53, 88, 179, 224
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	35, 219
ApeKI	GCWGC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	16, 47
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	214, 239
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	40, 211
BspPI	GGATC	2 cut(s)	35, 219
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	40, 211
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	21, 229
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	43, 214
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	40, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	17
CviJI	RGCY	5 cut(s)	53, 88, 137, 179, 224
CviKI_1	RGCY	5 cut(s)	53, 88, 137, 179, 224
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	2 cut(s)	42, 213
DpnII	GATC	2 cut(s)	40, 211
Eco31I	GGTCTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	62
HapII	CCGG	1 cut(s)	134
HinfI	GANTC	3 cut(s)	30, 106, 120
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	16, 47
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	29, 83, 211
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	21, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	40, 211
LpnPI	CCDG	5 cut(s)	102, 129, 147, 180, 203
Lsp1109I	GCAGC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	42, 213
MboI	GATC	2 cut(s)	40, 211
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	7
MseI	TTAA	1 cut(s)	277
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	40, 211
NmuCI	GTSAC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	30, 106
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	40, 211
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	5 cut(s)	55, 90, 149, 181, 226
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	65
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	21, 229
TasI	AATT	1 cut(s)	65
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	30, 106
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	116
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.