Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

41640197 .. 41643800

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACAATTACGACATGTCGCCGGAGATTCTGAGAGAAGAACCACACGGCCGCTTGTACAAAGCCACGTTCAAACCCACCGGCGAGACCGTCGTCATCAAGAAGATCCCGTCCAACGCTAACTTCCCGAACGGCCTACCTCCCGCCCTCTCCCGCGAGATTCTAATCTACCAGAAGCTTCCTAAGTCCGCTTACGTCATCGATCGCCGCCACGTGTTCCGCCAGTTCGAGGACGGCGGCCCCGTCTTCTACATTGTCTACGAGCACCTCGACACTGATCTCGCCGCCTTCATCGCCGCCTCCTCCGTCAGTCCCTTGCCGTCCGATTTGGTCAAGAAGCTTCTCTTCCAGCTCCTCAAGGGCGTCGACCACTGTCACCGTAACGGCGTCCTCCACCGGAACCTGAACCCCAAGAATCTGCTGCTTGACGAGAAACAACAGAGCCTCAAGATCGGAGATGGGATCAGTCAGTCTTTTGCTTTCTGCTACGACAATTTTGTGCCGGAGACGGTCACTCTCTCTTACCAGGCGCCGGAGGTTTTGCTGGGGTCCACCGATTTCTCGACTCCAGCGGACATTTGGGCCGTCGGCTGCATCTTCGGTACTTCTGATTTCATTTCATGCTTTCTTGATTCAATTGAGATTTTAATGGTTCGATTAGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

222

Amino Acids

24.91

Weight (kDa)

5.5

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 198	1.4e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 200	2.5e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	2 cut(s)	258, 366
AccII	CGCG	1 cut(s)	156
AclWI	GGATC	2 cut(s)	100, 470
AcoI	YGGCCR	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	214
AcyI	GRCGYC	3 cut(s)	363, 387, 530
AfaI	GTAC	2 cut(s)	59, 604
AfiI	CCNNNNNNNGG	2 cut(s)	229, 532
AflIII	ACRYGT	2 cut(s)	15, 213
AgsI	TTSAA	2 cut(s)	73, 636
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	178, 340, 352, 662
AluI	AGCT	4 cut(s)	178, 340, 352, 662
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	80, 500
AlwI	GGATC	2 cut(s)	100, 470
AoxI	GGCC	4 cut(s)	49, 133, 238, 582
ApeKI	GCWGC	2 cut(s)	421, 591
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	239, 549, 582
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	529
BbrPI	CACGTG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	408, 578
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	6 cut(s)	64, 148, 250, 304, 400, 569
BciT130I	CCWGG	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	80, 500
BfoI	RGCGCY	1 cut(s)	533
BisI	GCNGC	7 cut(s)	52, 208, 238, 285, 297, 422, 592
BlsI	GCNGC	7 cut(s)	53, 209, 239, 286, 298, 423, 593
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	239, 549, 582
BmiI	GGNNCC	4 cut(s)	241, 401, 531, 550
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	603
BoxI	GACNNNNGTC	2 cut(s)	92, 372
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	341, 431
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	3 cut(s)	363, 387, 530
BsaI	GGTCTC	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 532
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	229, 532
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	2 cut(s)	292, 344
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	408, 578
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	2 cut(s)	52, 205
BshFI	GGCC	4 cut(s)	51, 135, 240, 584
BshNI	GGYRCC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	52, 205
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	5 cut(s)	23, 81, 397, 503, 533
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	229, 532
BsmAI	GTCTC	2 cut(s)	80, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	51, 135, 240, 584
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	105, 202, 277, 450, 462
BspANI	GGCC	4 cut(s)	51, 135, 240, 584
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	241, 401, 531, 550
BspPI	GGATC	2 cut(s)	100, 470
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	5 cut(s)	105, 202, 277, 450, 462
BssNI	GRCGYC	3 cut(s)	363, 387, 530
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	4 cut(s)	91, 374, 380, 511
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	3 cut(s)	363, 387, 530
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	32, 183
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	5 cut(s)	108, 205, 280, 453, 465
BstMAI	GTCTC	2 cut(s)	80, 500
BstMBI	GATC	5 cut(s)	105, 202, 277, 450, 462
BstMCI	CGRYCG	2 cut(s)	52, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	2 cut(s)	92, 372
BstSCI	CCNGG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	408, 578
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	51, 135, 240, 584
BsuTUI	ATCGAT	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	273, 370
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	239, 549, 582
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	352, 376
Csp6I	GTAC	2 cut(s)	58, 603
CviAII	CATG	2 cut(s)	16, 621
CviQI	GTAC	2 cut(s)	58, 603
DdeI	CTNAG	2 cut(s)	32, 183
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	5 cut(s)	107, 204, 279, 452, 464
DpnII	GATC	5 cut(s)	105, 202, 277, 450, 462
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EciI	GGCGGA	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	549
Eco52I	CGGCCG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	525
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	2 cut(s)	19, 624
FaiI	YATR	2 cut(s)	17, 622
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	15, 620
FauI	CCCGC	2 cut(s)	151, 161
FblI	GTMKAC	2 cut(s)	258, 366
Fnu4HI	GCNGC	7 cut(s)	52, 208, 238, 285, 297, 422, 592
Fsp4HI	GCNGC	7 cut(s)	52, 208, 238, 285, 297, 422, 592
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	7 cut(s)	52, 208, 238, 285, 297, 422, 592
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	51, 135, 240, 584
HapII	CCGG	5 cut(s)	23, 81, 397, 503, 533
HgaI	GACGC	2 cut(s)	352, 376
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	3 cut(s)	363, 387, 530
Hin1II	CATG	2 cut(s)	19, 624
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	176, 338
HinfI	GANTC	5 cut(s)	28, 160, 415, 565, 632
HpaII	CCGG	5 cut(s)	23, 81, 397, 503, 533
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	259, 367, 552
Hpy188I	TCNGA	4 cut(s)	33, 325, 455, 610
Hpy188III	TCNNGA	6 cut(s)	100, 127, 334, 448, 562, 629
Hpy8I	GTNNAC	3 cut(s)	259, 367, 552
Hpy99I	CGWCG	3 cut(s)	95, 368, 590
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	4 cut(s)	91, 374, 380, 511
HpyCH4IV	ACGT	3 cut(s)	68, 195, 213
HpyCH4V	TGCA	1 cut(s)	594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	32, 183
HpySE526I	ACGT	3 cut(s)	68, 195, 213
Hsp92I	GRCGYC	3 cut(s)	363, 387, 530
Hsp92II	CATG	2 cut(s)	19, 624
HspAI	GCGC	1 cut(s)	530
KasI	GGCGCC	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	105, 202, 277, 450, 462
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	2 cut(s)	408, 578
LweI	GCATC	1 cut(s)	603
MaeII	ACGT	3 cut(s)	68, 195, 213
MaeIII	GTNAC	3 cut(s)	374, 380, 511
MalI	GATC	5 cut(s)	107, 204, 279, 452, 464
MboI	GATC	5 cut(s)	105, 202, 277, 450, 462
MboII	GAAGA	5 cut(s)	50, 115, 238, 337, 589
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	7, 493, 636
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	138
MseI	TTAA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	5 cut(s)	23, 81, 397, 503, 533
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	293
NarI	GGCGCC	1 cut(s)	530
NdeII	GATC	5 cut(s)	105, 202, 277, 450, 462
NlaIII	CATG	2 cut(s)	19, 624
NlaIV	GGNNCC	4 cut(s)	241, 401, 531, 550
NmuCI	GTSAC	2 cut(s)	374, 511
NspI	RCATGY	1 cut(s)	19
PciI	ACATGT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 267
PfeI	GAWTC	4 cut(s)	28, 160, 415, 632
PkrI	GCNGC	7 cut(s)	53, 209, 239, 286, 298, 423, 593
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	559
PluTI	GGCGCC	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	214
PscI	ACATGT	1 cut(s)	15
PshAI	GACNNNNGTC	2 cut(s)	92, 372
Psp6I	CCWGG	1 cut(s)	525
PspCI	CACGTG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	4 cut(s)	241, 401, 531, 550
PspPI	GGNCC	3 cut(s)	239, 549, 582
PsuI	RGATCY	1 cut(s)	105
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	59, 604
RsaNI	GTAC	2 cut(s)	58, 603
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	7 cut(s)	52, 208, 238, 285, 297, 422, 592
Sau3AI	GATC	5 cut(s)	105, 202, 277, 450, 462
Sau96I	GGNCC	3 cut(s)	239, 549, 582
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	603
SfoI	GGCGCC	1 cut(s)	531
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	356, 446
SmoI	CTYRAG	2 cut(s)	356, 446
Sse9I	AATT	3 cut(s)	7, 493, 636
SspDI	GGCGCC	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	4 cut(s)	91, 374, 380, 511
TaiI	ACGT	3 cut(s)	71, 198, 216
TaqI	TCGA	6 cut(s)	201, 228, 270, 366, 563, 655
TasI	AATT	3 cut(s)	7, 493, 636
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	5 cut(s)	54, 210, 240, 287, 299
TfiI	GAWTC	4 cut(s)	28, 160, 415, 632
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	2 cut(s)	280, 377
TseFI	GTSAC	2 cut(s)	374, 511
TseI	GCWGC	2 cut(s)	421, 591
Tsp45I	GTSAC	2 cut(s)	374, 511
TspDTI	ATGAA	3 cut(s)	280, 604, 609
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	280, 377
VpaK11BI	GGWCC	1 cut(s)	549
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XmiI	GTMKAC	2 cut(s)	258, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.