Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

73854267 .. 73871155

Gene Structure 16889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG560400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTGACTGGGGGTGTACTGTTTGTCGGAATCGGTGATGATCCTAATCAAGCTGATAAGCAGCAATTGCGAGAGATTTTCAGACAGCTAGGAAAACCGATGTTGAATCAGTGTCCAGGACTCACTTCGTTGCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGATCGGTTCTATTTGGCAGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTATTTGGAACAAGATGGAGTTGAACTTCTATCGCAATTACCATGTTTAGGATTTGCTTTTGCCCCAACAACATATTTTTTCCCTTGCATAATGTGGCTTGCCTTCCAGACTGCGAAATTGTTGTATTCAACATTGCCAAAGTGGAACTTCAGACATCCCAAAAACAATTTTTTTCCCACCAACTCTGAGTTGTGGTCATGGGAAACCTTCAGTGAAGACATTTCTTCATGGACAGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATCAGTTGAACATCACTATAGACCCCAATGATTATCTACGGTACACCACCAGTGTCGACATAAGTCCATCTGAATCATTTCTGCGTGGTGGTAAGCATCCAATTCTCACCGTGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGTATGCTGGTGTGAATAAATTTTCGCTTCTAAGTGTAGCTGTTGGATTACCGGTGAGAATGAGGTTGCCAAAACATGAGAAGGGTGTGTGTGAGGGAATCTATTCTTATGTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

278

Amino Acids

31.32

Weight (kDa)

4.91

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	555
AclWI	GGATC	3 cut(s)	35, 219, 670
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	2 cut(s)	364, 424
AfaI	GTAC	2 cut(s)	18, 542
AfiI	CCNNNNNNNGG	2 cut(s)	157, 278
AflIII	ACRYGT	1 cut(s)	717
AgeI	ACCGGT	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	106, 254, 360, 508
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	6 cut(s)	53, 88, 224, 620, 655, 758
AluI	AGCT	6 cut(s)	53, 88, 224, 620, 655, 758
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	35, 219, 670
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	737
AsiGI	ACCGGT	1 cut(s)	769
Asp700I	GAANNNNTTC	2 cut(s)	576, 820
AsuHPI	GGTGA	5 cut(s)	16, 47, 479, 598, 784
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	214, 239, 574
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	225, 516
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	18
BoxI	GACNNNNGTC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 278
Bse118I	RCCGGY	2 cut(s)	133, 769
Bse1I	ACTGG	2 cut(s)	13, 549
Bse3DI	GCAATG	1 cut(s)	362
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	385, 595
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	157, 278
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	408, 672
BseNI	ACTGG	2 cut(s)	13, 549
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	620
BshTI	ACCGGT	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	134, 770
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	2 cut(s)	157, 278
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	688
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	5 cut(s)	40, 178, 211, 499, 662
BspCNI	CTCAG	2 cut(s)	409, 671
BspPI	GGATC	3 cut(s)	35, 219, 670
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	2 cut(s)	133, 769
BsrI	ACTGG	2 cut(s)	13, 549
BssAI	RCCGGY	2 cut(s)	133, 769
BssMI	GATC	5 cut(s)	40, 178, 211, 499, 662
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	5 cut(s)	21, 229, 484, 540, 610
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	135, 330
BstDEI	CTNAG	4 cut(s)	417, 496, 658, 749
BstF5I	GGATG	2 cut(s)	385, 595
BstKTI	GATC	5 cut(s)	43, 181, 214, 502, 665
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	40, 178, 211, 499, 662
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 626
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	2 cut(s)	638, 721
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	225, 516
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	385, 595
BtsIMutI	CAGTG	3 cut(s)	116, 448, 556
Cac8I	GCNNGC	2 cut(s)	135, 330
Cfr10I	RCCGGY	2 cut(s)	133, 769
Csp6I	GTAC	2 cut(s)	17, 541
CspAI	ACCGGT	1 cut(s)	769
CviAII	CATG	6 cut(s)	273, 429, 459, 635, 718, 794
CviJI	RGCY	8 cut(s)	53, 88, 137, 224, 328, 620, 655, 758
CviKI_1	RGCY	8 cut(s)	53, 88, 137, 224, 328, 620, 655, 758
CviQI	GTAC	2 cut(s)	17, 541
DdeI	CTNAG	4 cut(s)	417, 496, 658, 749
DpnI	GATC	5 cut(s)	42, 180, 213, 501, 664
DpnII	GATC	5 cut(s)	40, 178, 211, 499, 662
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	364, 424
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	636
FaeI	CATG	6 cut(s)	276, 432, 462, 638, 721, 797
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	6 cut(s)	272, 428, 458, 634, 717, 793
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	2 cut(s)	372, 582
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	624
HapII	CCGG	2 cut(s)	134, 770
Hin1II	CATG	6 cut(s)	276, 432, 462, 638, 721, 797
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	7 cut(s)	30, 106, 120, 572, 676, 693, 816
HpaII	CCGG	2 cut(s)	134, 770
HphI	GGTGA	5 cut(s)	16, 47, 479, 598, 784
Hpy166II	GTNNAC	4 cut(s)	17, 543, 556, 715
Hpy188I	TCNGA	6 cut(s)	29, 83, 211, 383, 418, 571
Hpy188III	TCNNGA	2 cut(s)	337, 660
Hpy8I	GTNNAC	4 cut(s)	17, 543, 556, 715
HpyAV	CCTTC	4 cut(s)	155, 343, 448, 793
HpyCH4III	ACNGT	5 cut(s)	21, 229, 484, 540, 610
HpyCH4V	TGCA	3 cut(s)	318, 634, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 626
HpyF3I	CTNAG	4 cut(s)	417, 496, 658, 749
Hsp92II	CATG	6 cut(s)	276, 432, 462, 638, 721, 797
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	40, 178, 211, 499, 662
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	42, 180, 213, 501, 664
MboI	GATC	5 cut(s)	40, 178, 211, 499, 662
MboII	GAAGA	2 cut(s)	447, 458
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	6 cut(s)	65, 266, 347, 397, 600, 737
MlyI	GAGTC	2 cut(s)	114, 670
MmeI	TCCRAC	2 cut(s)	7, 742
MnlI	CCTC	2 cut(s)	774, 805
Mph1103I	ATGCAT	1 cut(s)	636
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	2 cut(s)	576, 820
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	134, 770
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	67, 626
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	5 cut(s)	40, 178, 211, 499, 662
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	6 cut(s)	276, 432, 462, 638, 721, 797
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	2 cut(s)	638, 721
PciI	ACATGT	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	576, 820
PfeI	GAWTC	5 cut(s)	30, 106, 572, 693, 816
PfoI	TCCNGGA	1 cut(s)	115
PinAI	ACCGGT	1 cut(s)	769
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	114, 670
PpsI	GAGTC	2 cut(s)	114, 670
PscI	ACATGT	1 cut(s)	717
PshAI	GACNNNNGTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	18, 542
RsaNI	GTAC	2 cut(s)	17, 541
SalI	GTCGAC	1 cut(s)	554
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	5 cut(s)	40, 178, 211, 499, 662
SchI	GAGTC	2 cut(s)	114, 670
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	2 cut(s)	225, 516
Sse9I	AATT	6 cut(s)	65, 266, 347, 397, 600, 737
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	5 cut(s)	21, 229, 484, 540, 610
TaqI	TCGA	1 cut(s)	555
TasI	AATT	6 cut(s)	65, 266, 347, 397, 600, 737
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	5 cut(s)	30, 106, 572, 693, 816
TscAI	CASTG	3 cut(s)	116, 448, 556
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	188, 447
TspRI	CASTG	3 cut(s)	116, 448, 556
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	2 cut(s)	638, 721
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	2 cut(s)	576, 820
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.