Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

8488263 .. 8490221

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAAGATTACGAGATCAGTCCGGAGATTTTGAGGGTGGAATCCCATGGCCAAGTGTACAAAGCCACGCACAAAGTGGCCGGAGAGTTGGTGACGATTAAAAAGGTGACGGCGGACGACGGAGTCGTACCTCCTACTCTCGTCCGCGAGATGTCTGTCTTGGGGAAGTTTACGAAATCGGCTTACGTCATCAACTGCCGCGAAGTCATCCACGAGGTCGAGGACTACAAGCCCGTTTACTACGTTATTTACGAGTACCTACAGACTGATCTCCACAGCTACATCGCCGCCAAACCCTTACCGTCCGATGTGGTCAAGAATCTTCTCTTCAAGCTCCTCCAGGGAGTCGACGAGTGTCACTCTAAAGGAGTCCGCCACCGGAACCTAAACCCTAGTAATCTGCTGGTGGACGAGGAACGAGGGTGTCTTAAAATTGGGGCTGGCATTGGTCAGTCCTTCGCTTTTTTTGGGGAGGCTTCTTCCATCCCCGGCGGGACGGTCAGTCTCTTTTACCAGGCTCCGGAGGCTTTGCTCCGATCAACCAAGTGCAGGGCTGCTGTAGACATGTGGGCTGTCGGCTGCATATTCGCTGAGATGGTGACTGGAGATGTTCTGTTTGTCGGAATTGGTGATGATCCTAAACACGCTGATAAGGAGCAATTGCGAGAGATTTTCAGGCAGTTAGGAAAACCAACAGAGCATGAGTGGCGAGGAGTCACTTCTTTGCCGGGTTGGGAACCCTACGAAGAATGGGAAGGAGAAAAGAAGAAAGCTCGGTGTTATTTGGCAGGAGATTTGCCAAAAGATCTGCTGGTAGCTGCAGTTTCTTTGGAACAAGATGGAGCTGATCTTCTTTCGAAAATGCTTACATATGATCCAGTTAAAAGAATCACAGCTAAAGCAGCAATGGAGCACCCCTACTTCGAGCCAACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

313

Amino Acids

34.82

Weight (kDa)

5.56

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 308	4.6e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 203	4.8e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	348, 561
AccII	CGCG	2 cut(s)	147, 201
AccIII	TCCGGA	2 cut(s)	22, 520
AciI	CCGC	6 cut(s)	113, 145, 199, 288, 373, 492
AclWI	GGATC	2 cut(s)	629, 869
AcoI	YGGCCR	2 cut(s)	49, 78
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	3 cut(s)	59, 129, 257
AfiI	CCNNNNNNNGG	2 cut(s)	520, 549
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	1 cut(s)	331
AhdI	GACNNNNNGTC	1 cut(s)	501
AjnI	CCWGG	2 cut(s)	339, 513
AluBI	AGCT	6 cut(s)	279, 334, 773, 818, 845, 896
AluI	AGCT	6 cut(s)	279, 334, 773, 818, 845, 896
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	629, 869
Aor13HI	TCCGGA	2 cut(s)	22, 520
AoxI	GGCC	2 cut(s)	49, 78
ApeKI	GCWGC	4 cut(s)	554, 579, 818, 902
AsuC2I	CCSGG	2 cut(s)	489, 729
AsuHPI	GGTGA	4 cut(s)	103, 118, 610, 641
AsuII	TTCGAA	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	51
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	541, 566, 805, 914
BccI	CCATC	3 cut(s)	491, 589, 833
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	341, 515
BcnI	CCSGG	2 cut(s)	489, 729
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	3 cut(s)	260, 558, 819
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	6 cut(s)	199, 288, 555, 580, 819, 903
BlsI	GCNGC	6 cut(s)	200, 289, 556, 581, 820, 904
Bme1390I	CCNGG	4 cut(s)	341, 489, 515, 729
BmeRI	GACNNNNNGTC	1 cut(s)	501
BmiI	GGNNCC	3 cut(s)	383, 519, 738
BmrFI	CCNGG	4 cut(s)	341, 489, 515, 729
BoxI	GACNNNNGTC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	2 cut(s)	323, 624
Bpu14I	TTCGAA	1 cut(s)	857
BpuMI	CCSGG	2 cut(s)	489, 729
BsaJI	CCNNGG	3 cut(s)	46, 340, 487
BsaWI	WCCGGW	3 cut(s)	22, 378, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 549
Bse1I	ACTGG	2 cut(s)	607, 878
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	2 cut(s)	22, 520
BseBI	CCWGG	2 cut(s)	341, 515
BseDI	CCNNGG	3 cut(s)	46, 340, 487
BseGI	GGATG	2 cut(s)	207, 483
BseLI	CCNNNNNNNGG	2 cut(s)	520, 549
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	607, 878
BseRI	GAGGAG	2 cut(s)	326, 726
BseXI	GCAGC	4 cut(s)	541, 566, 805, 914
BsgI	GTGCAG	1 cut(s)	568
Bsh1236I	CGCG	2 cut(s)	147, 201
BshFI	GGCC	2 cut(s)	51, 80
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	6 cut(s)	23, 81, 379, 489, 521, 728
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	520, 549
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	51, 80
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp13I	TCCGGA	2 cut(s)	22, 520
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	6 cut(s)	113, 145, 199, 288, 373, 492
BspANI	GGCC	2 cut(s)	51, 80
BspCNI	CTCAG	1 cut(s)	583
BspEI	TCCGGA	2 cut(s)	22, 520
BspFNI	CGCG	2 cut(s)	147, 201
BspLI	GGNNCC	3 cut(s)	383, 519, 738
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	629, 869
BspT104I	TTCGAA	1 cut(s)	857
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	607, 878
BssECI	CCNNGG	3 cut(s)	46, 340, 487
BssMI	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	341, 515
Bst4CI	ACNGT	2 cut(s)	303, 499
Bst6I	CTCTTC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	207, 483
BstFNI	CGCG	2 cut(s)	147, 201
BstKTI	GATC	7 cut(s)	18, 271, 539, 637, 808, 850, 877
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 706, 902
BstNI	CCWGG	2 cut(s)	341, 515
BstNSI	RCATGY	1 cut(s)	568
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	4 cut(s)	339, 487, 513, 727
BstSFI	CTRYAG	3 cut(s)	260, 558, 819
BstUI	CGCG	2 cut(s)	147, 201
BstV1I	GCAGC	4 cut(s)	541, 566, 805, 914
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	51, 80
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	207, 483
Cac8I	GCNNGC	1 cut(s)	442
Csp6I	GTAC	3 cut(s)	58, 128, 256
CviAII	CATG	4 cut(s)	47, 565, 701, 936
CviQI	GTAC	3 cut(s)	58, 128, 256
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	7 cut(s)	17, 270, 538, 636, 807, 849, 876
DpnII	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
DraIII	CACNNNGTG	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	49, 78
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	2 cut(s)	128, 362
Eco130I	CCWWGG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	339, 513
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	4 cut(s)	50, 568, 704, 939
FaiI	YATR	7 cut(s)	48, 566, 584, 702, 871, 873, 937
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	4 cut(s)	46, 564, 700, 935
FauI	CCCGC	1 cut(s)	485
FauNDI	CATATG	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	348, 561
Fnu4HI	GCNGC	6 cut(s)	199, 288, 555, 580, 819, 903
FokI	GGATG	2 cut(s)	194, 470
Fsp4HI	GCNGC	6 cut(s)	199, 288, 555, 580, 819, 903
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	6 cut(s)	199, 288, 555, 580, 819, 903
GsuI	CTGGAG	2 cut(s)	323, 624
HaeIII	GGCC	2 cut(s)	51, 80
HapII	CCGG	6 cut(s)	23, 81, 379, 489, 521, 728
Hin1II	CATG	4 cut(s)	50, 568, 704, 939
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	7 cut(s)	41, 123, 319, 345, 369, 714, 888
HpaII	CCGG	6 cut(s)	23, 81, 379, 489, 521, 728
HphI	GGTGA	4 cut(s)	103, 118, 610, 641
Hpy166II	GTNNAC	6 cut(s)	58, 171, 238, 349, 409, 562
Hpy188I	TCNGA	3 cut(s)	307, 536, 623
Hpy188III	TCNNGA	3 cut(s)	23, 316, 521
Hpy8I	GTNNAC	6 cut(s)	58, 171, 238, 349, 409, 562
Hpy99I	CGWCG	2 cut(s)	122, 353
HpyAV	CCTTC	2 cut(s)	466, 749
HpyCH4III	ACNGT	2 cut(s)	303, 499
HpyCH4IV	ACGT	2 cut(s)	186, 243
HpyCH4V	TGCA	4 cut(s)	4, 549, 582, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 706, 902
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	186, 243
Hsp92II	CATG	4 cut(s)	50, 568, 704, 939
Kpn2I	TCCGGA	2 cut(s)	22, 520
Kzo9I	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
LmnI	GCTCC	6 cut(s)	339, 523, 537, 655, 842, 910
Lsp1109I	GCAGC	4 cut(s)	541, 566, 805, 914
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	186, 243
MaeIII	GTNAC	5 cut(s)	91, 106, 356, 598, 715
MalI	GATC	7 cut(s)	17, 270, 538, 636, 807, 849, 876
MboI	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
MboII	GAAGA	6 cut(s)	314, 319, 471, 758, 778, 842
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	915
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	432, 624, 659
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	4 cut(s)	132, 354, 378, 723
MmeI	TCCRAC	1 cut(s)	601
Mox20I	TGGCCA	1 cut(s)	51
MroI	TCCGGA	2 cut(s)	22, 520
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	3 cut(s)	99, 429, 882
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	6 cut(s)	23, 81, 379, 489, 521, 728
MspR9I	CCNGG	4 cut(s)	341, 489, 515, 729
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	2 cut(s)	341, 515
MvnI	CGCG	2 cut(s)	147, 201
MwoI	GCNNNNNNNGC	3 cut(s)	524, 706, 902
NciI	CCSGG	2 cut(s)	489, 729
NcoI	CCATGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
NlaIII	CATG	4 cut(s)	50, 568, 704, 939
NlaIV	GGNNCC	3 cut(s)	383, 519, 738
NmuCI	GTSAC	5 cut(s)	91, 106, 356, 598, 715
NspI	RCATGY	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	857
PciI	ACATGT	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 249
PfeI	GAWTC	3 cut(s)	41, 319, 888
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	200, 289, 556, 581, 820, 904
PleI	GAGTC	4 cut(s)	131, 353, 377, 722
PpsI	GAGTC	4 cut(s)	131, 353, 377, 722
PscI	ACATGT	1 cut(s)	564
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	339, 513
PspGI	CCWGG	2 cut(s)	339, 513
PspN4I	GGNNCC	3 cut(s)	383, 519, 738
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	805
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	3 cut(s)	59, 129, 257
RsaNI	GTAC	3 cut(s)	58, 128, 256
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	99, 429, 882
SatI	GCNGC	6 cut(s)	199, 288, 555, 580, 819, 903
Sau3AI	GATC	7 cut(s)	15, 268, 536, 634, 805, 847, 874
SchI	GAGTC	4 cut(s)	132, 354, 378, 723
ScrFI	CCNGG	4 cut(s)	341, 489, 515, 729
SduI	GDGCHC	1 cut(s)	915
SfcI	CTRYAG	3 cut(s)	260, 558, 819
SfuI	TTCGAA	1 cut(s)	857
Sse9I	AATT	3 cut(s)	432, 624, 659
SsiI	CCGC	6 cut(s)	113, 145, 199, 288, 373, 492
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	339, 487, 513, 727
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	303, 499
TaiI	ACGT	2 cut(s)	189, 246
TaqI	TCGA	4 cut(s)	219, 348, 857, 924
TasI	AATT	3 cut(s)	432, 624, 659
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	201, 290
TfiI	GAWTC	3 cut(s)	41, 319, 888
Tru1I	TTAA	3 cut(s)	99, 429, 882
Tru9I	TTAA	3 cut(s)	99, 429, 882
TseFI	GTSAC	5 cut(s)	91, 106, 356, 598, 715
TseI	GCWGC	4 cut(s)	554, 579, 818, 902
Tsp45I	GTSAC	5 cut(s)	91, 106, 356, 598, 715
TspGWI	ACGGA	1 cut(s)	135
Tth111I	GACNNNGTC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	2 cut(s)	348, 561
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.