Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

7258080 .. 7260104

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACCCCCGCCCCAAAATACAAGATTACGAGATCAGTCCGGAGATTTTGAGGGTGGAATCCCATGGCCGAGTGTACAAAGCCACGCACAAATTGACCAGCGAGTTAGTCACGATTAAAAAGGTGACGGCGGACGACGGCGTACCTCCCACTCTCGTCCGCGAGATGTCTGTCTTGGGGAAGTTTACGAAATCGGCTTACGTCGTCAACTGCCGCGAAGTCATCCACGAGGTCGAGGACTACAAGCCCGTTTACTACTTAGGAAAACCAACAGAGCATGAATGGCGAGGAGTCACTTCTTTGCCGGGTTGGGAACCCTACGAAGAATGGGAAGGAGAAAAGAAGAAAGCTCGGTGTTATTTGGCAGGAGATTTGCCAAAAGATCTGCTGGTAGCTGCAGTTTCTTTGGAACAAGATGGAGCTGATCTTCTTTCGAAAATGTTTACATATGATCCAGTGAAAAGAATGACAGCTAAAGCAGCAATGGAGCACCCCTACTTCAAGCCAACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

171

Amino Acids

19.52

Weight (kDa)

6.53

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	162, 216
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	4 cut(s)	10, 131, 160, 214
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	67
AfaI	GTAC	2 cut(s)	77, 144
AgsI	TTSAA	1 cut(s)	502
AluBI	AGCT	4 cut(s)	350, 395, 422, 473
AluI	AGCT	4 cut(s)	350, 395, 422, 473
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	395, 479
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	434
BauI	CACGAG	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	382, 491
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	144, 154
BcnI	CCSGG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	3 cut(s)	214, 396, 480
BlsI	GCNGC	3 cut(s)	215, 397, 481
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	382, 491
Bsh1236I	CGCG	2 cut(s)	162, 216
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	41, 305
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp13I	TCCGGA	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	33, 382, 424, 451
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	4 cut(s)	10, 131, 160, 214
BspANI	GGCC	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	162, 216
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	4 cut(s)	33, 382, 424, 451
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	2 cut(s)	162, 216
BstKTI	GATC	4 cut(s)	36, 385, 427, 454
BstMBI	GATC	4 cut(s)	33, 382, 424, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 479
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	2 cut(s)	162, 216
BstV1I	GCAGC	2 cut(s)	382, 491
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	76, 143
CviAII	CATG	3 cut(s)	65, 278, 513
CviJI	RGCY	9 cut(s)	69, 83, 197, 247, 350, 395, 422, 473, 505
CviKI_1	RGCY	9 cut(s)	69, 83, 197, 247, 350, 395, 422, 473, 505
CviQI	GTAC	2 cut(s)	76, 143
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	35, 384, 426, 453
DpnII	GATC	4 cut(s)	33, 382, 424, 451
EaeI	YGGCCR	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	68, 281, 516
FaiI	YATR	5 cut(s)	66, 279, 448, 450, 514
FatI	CATG	3 cut(s)	64, 277, 512
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	214, 396, 480
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	214, 396, 480
GluI	GCNGC	3 cut(s)	214, 396, 480
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	41, 305
Hin1II	CATG	3 cut(s)	68, 281, 516
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	59, 291
HpaII	CCGG	2 cut(s)	41, 305
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	5 cut(s)	76, 186, 208, 253, 444
Hpy188III	TCNNGA	2 cut(s)	41, 112
Hpy8I	GTNNAC	5 cut(s)	76, 186, 208, 253, 444
Hpy99I	CGWCG	2 cut(s)	140, 206
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 479
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	68, 281, 516
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	33, 382, 424, 451
LmnI	GCTCC	2 cut(s)	419, 487
LpnPI	CCDG	6 cut(s)	54, 112, 318, 351, 374, 468
Lsp1109I	GCAGC	2 cut(s)	382, 491
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	109, 124, 292
MalI	GATC	4 cut(s)	35, 384, 426, 453
MboI	GATC	4 cut(s)	33, 382, 424, 451
MboII	GAAGA	3 cut(s)	335, 355, 419
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	45, 156, 223, 229, 281
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	1 cut(s)	117
MspI	CCGG	2 cut(s)	41, 305
MspR9I	CCNGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	162, 216
MwoI	GCNNNNNNNGC	2 cut(s)	283, 479
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	33, 382, 424, 451
NlaIII	CATG	3 cut(s)	68, 281, 516
NlaIV	GGNNCC	1 cut(s)	315
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	109, 124, 292
NspV	TTCGAA	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	215, 397, 481
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	2 cut(s)	77, 144
RsaNI	GTAC	2 cut(s)	76, 143
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	3 cut(s)	214, 396, 480
Sau3AI	GATC	4 cut(s)	33, 382, 424, 451
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	8 cut(s)	126, 148, 204, 234, 352, 397, 424, 475
SfcI	CTRYAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	434
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	4 cut(s)	10, 131, 160, 214
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	234, 434
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	3 cut(s)	109, 124, 292
TseI	GCWGC	2 cut(s)	395, 479
Tsp45I	GTSAC	3 cut(s)	109, 124, 292
TspDTI	ATGAA	2 cut(s)	17, 294
TspRI	CASTG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.