Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Reverse (-)

86936136 .. 86938962

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAAGATTACGAGATCAGTCCGGAGATTTTGAGGGTGGAATCCCATGGCCGAGTGTACAAAGCCACGCACAAATTGACCGGAGAGTTGGTGACGATTAAAAAGGTGACTGCGGACGACGGCGTCGTACCTCCTACTCTCGTCCGCGAGATGTCCGTCTTGGGGAAGTTTACGAAATCGGCTTACGTTGTCAACTGCCGCGAAGTCATCCACGAGGTCGAGGACTACAAGCCCGTTTACTACGTTATTTACGAGTACCTACAGACTGATCTCCACAGCTACATCGCCGCCAAACCCTTACCGTCCGATGTGGTCAAGAATCTTCTCTTCAAGCTCCTCCAGGGAGTCGACGAGTGTCACTCTAAAGGAGTCCGCCACCGGAACCTAAACCCTAGTAATCTGCTGGCGGACGAGGAACGAGGGTGTCTTAAAATTGGGGCTGGCATTGGTCAGTCCTTCGCTTTTTTGGGGAGGCTTCTTCCATCCCCGGCGGGACGGTCAGTCTCTTTTACCAGGCTCCGGAGGCTTTGCTCCGATCAACCAAGTGCTGGGCTGCTGTTGACATGTGGGCTGTCGGCTGCATATTCGGTACTATTCACTGAGATGGTGACTGGGGAGGTTCTGTTTGTCGGAATTGGTGATGATCCTAAACACGCTGATAACGAGCACTTGCGTGAGATTTTCAGGCAGTTAGGAAAACCAACAGAGCATGAGTGGCGAGGAGTCACTTCTTTGCCGGGTTGGGAACCCTACGAAGAATGGGAAGGAGAAAAGAAGAAAGCTCGGTGTTATTTGGCAGGAGATTTGCCAAAAGATCTGCTGGTAGCTGCAGTTTCTTTGGAACAAGATGGAGCTGATCTTCTTTCGAAAATGCTTACATATGATCCAGTTAAAAGAATCACAGTTAAAGCAGCAATGGAGCACCCCTACTTCAAGCCAACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

315

Amino Acids

35.22

Weight (kDa)

6.38

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 145	8.7e-19	Protein kinase domain
Pkinase	PF00069	195 - 311	4.9e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	2 cut(s)	147, 201
AccIII	TCCGGA	2 cut(s)	22, 519
AciI	CCGC	7 cut(s)	113, 145, 199, 288, 373, 407, 491
AclWI	GGATC	2 cut(s)	638, 878
AcoI	YGGCCR	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	4 cut(s)	59, 129, 257, 591
AfiI	CCNNNNNNNGG	3 cut(s)	162, 519, 548
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	2 cut(s)	331, 934
AhdI	GACNNNNNGTC	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	339, 512
AleI	CACNNNNGTG	1 cut(s)	672
AluBI	AGCT	5 cut(s)	279, 334, 782, 827, 854
AluI	AGCT	5 cut(s)	279, 334, 782, 827, 854
Alw21I	GWGCWC	2 cut(s)	669, 924
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	2 cut(s)	638, 878
Aor13HI	TCCGGA	2 cut(s)	22, 519
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	4 cut(s)	553, 578, 827, 911
AsuC2I	CCSGG	2 cut(s)	488, 738
AsuHPI	GGTGA	4 cut(s)	103, 118, 619, 650
AsuII	TTCGAA	1 cut(s)	866
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	669, 924
BbvI	GCAGC	4 cut(s)	540, 565, 814, 923
BccI	CCATC	3 cut(s)	490, 598, 842
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	341, 514
BcnI	CCSGG	2 cut(s)	488, 738
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	260, 828
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	6 cut(s)	199, 288, 554, 579, 828, 912
BlsI	GCNGC	6 cut(s)	200, 289, 555, 580, 829, 913
Bme1390I	CCNGG	4 cut(s)	341, 488, 514, 738
BmeRI	GACNNNNNGTC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	383, 518, 747
BmrFI	CCNGG	4 cut(s)	341, 488, 514, 738
BmrI	ACTGGG	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	621
BoxI	GACNNNNGTC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	866
BpuMI	CCSGG	2 cut(s)	488, 738
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	46, 340, 486
BsaWI	WCCGGW	4 cut(s)	22, 80, 378, 519
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 608, 638
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 519, 548
Bse1I	ACTGG	2 cut(s)	616, 887
Bse3DI	GCAATG	1 cut(s)	921
BseAI	TCCGGA	2 cut(s)	22, 519
BseBI	CCWGG	2 cut(s)	341, 514
BseDI	CCNNGG	3 cut(s)	46, 340, 486
BseGI	GGATG	2 cut(s)	207, 482
BseLI	CCNNNNNNNGG	3 cut(s)	162, 519, 548
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	616, 887
BseRI	GAGGAG	2 cut(s)	326, 735
BseXI	GCAGC	4 cut(s)	540, 565, 814, 923
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	2 cut(s)	147, 201
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	669, 924
BsiSI	CCGG	6 cut(s)	23, 81, 379, 488, 520, 737
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	162, 519, 548
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	669, 924
Bsp13I	TCCGGA	2 cut(s)	22, 519
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	7 cut(s)	113, 145, 199, 288, 373, 407, 491
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	592
BspEI	TCCGGA	2 cut(s)	22, 519
BspFNI	CGCG	2 cut(s)	147, 201
BspLI	GGNNCC	3 cut(s)	383, 518, 747
BspMAI	CTGCAG	1 cut(s)	832
BspPI	GGATC	2 cut(s)	638, 878
BspT104I	TTCGAA	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	921
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	616, 887
BssECI	CCNNGG	3 cut(s)	46, 340, 486
BssMI	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	341, 514
Bst4CI	ACNGT	3 cut(s)	303, 498, 904
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	405, 442
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	207, 482
BstFNI	CGCG	2 cut(s)	147, 201
BstKTI	GATC	7 cut(s)	18, 271, 538, 646, 817, 859, 886
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 715
BstNI	CCWGG	2 cut(s)	341, 514
BstNSI	RCATGY	1 cut(s)	567
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	4 cut(s)	339, 486, 512, 736
BstSFI	CTRYAG	2 cut(s)	260, 828
BstUI	CGCG	2 cut(s)	147, 201
BstV1I	GCAGC	4 cut(s)	540, 565, 814, 923
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	207, 482
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	405, 442
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	58, 128, 256, 590
CviAII	CATG	4 cut(s)	47, 564, 710, 945
CviQI	GTAC	4 cut(s)	58, 128, 256, 590
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	7 cut(s)	17, 270, 537, 645, 816, 858, 885
DpnII	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	2 cut(s)	362, 422
Eco130I	CCWWGG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	339, 512
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	4 cut(s)	50, 567, 713, 948
FaiI	YATR	7 cut(s)	48, 565, 583, 711, 880, 882, 946
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	4 cut(s)	46, 563, 709, 944
FauI	CCCGC	1 cut(s)	484
FauNDI	CATATG	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	199, 288, 554, 579, 828, 912
FokI	GGATG	2 cut(s)	194, 469
Fsp4HI	GCNGC	6 cut(s)	199, 288, 554, 579, 828, 912
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	6 cut(s)	199, 288, 554, 579, 828, 912
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	6 cut(s)	23, 81, 379, 488, 520, 737
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	50, 567, 713, 948
HincII	GTYRAC	3 cut(s)	193, 349, 561
HindII	GTYRAC	3 cut(s)	193, 349, 561
HinfI	GANTC	6 cut(s)	41, 319, 345, 369, 723, 897
HpaII	CCGG	6 cut(s)	23, 81, 379, 488, 520, 737
HphI	GGTGA	4 cut(s)	103, 118, 619, 650
Hpy166II	GTNNAC	6 cut(s)	58, 171, 193, 238, 349, 561
Hpy188I	TCNGA	3 cut(s)	307, 535, 632
Hpy188III	TCNNGA	3 cut(s)	23, 316, 520
Hpy8I	GTNNAC	6 cut(s)	58, 171, 193, 238, 349, 561
Hpy99I	CGWCG	3 cut(s)	122, 128, 353
HpyAV	CCTTC	2 cut(s)	466, 758
HpyCH4III	ACNGT	3 cut(s)	303, 498, 904
HpyCH4IV	ACGT	2 cut(s)	186, 243
HpyCH4V	TGCA	3 cut(s)	4, 581, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 715
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	2 cut(s)	186, 243
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	50, 567, 713, 948
Kpn2I	TCCGGA	2 cut(s)	22, 519
Kzo9I	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
LmnI	GCTCC	5 cut(s)	339, 522, 536, 851, 919
Lsp1109I	GCAGC	4 cut(s)	540, 565, 814, 923
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	186, 243
MaeIII	GTNAC	5 cut(s)	91, 106, 356, 607, 724
MalI	GATC	7 cut(s)	17, 270, 537, 645, 816, 858, 885
MboI	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
MboII	GAAGA	6 cut(s)	314, 319, 470, 767, 787, 851
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	669, 924
MluCI	AATT	3 cut(s)	74, 432, 633
MlyI	GAGTC	3 cut(s)	354, 378, 732
MmeI	TCCRAC	1 cut(s)	610
MroI	TCCGGA	2 cut(s)	22, 519
MseI	TTAA	4 cut(s)	99, 429, 891, 906
MslI	CAYNNNNRTG	2 cut(s)	602, 672
MspI	CCGG	6 cut(s)	23, 81, 379, 488, 520, 737
MspR9I	CCNGG	4 cut(s)	341, 488, 514, 738
MvaI	CCWGG	2 cut(s)	341, 514
MvnI	CGCG	2 cut(s)	147, 201
MwoI	GCNNNNNNNGC	2 cut(s)	523, 715
NciI	CCSGG	2 cut(s)	488, 738
NcoI	CCATGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
NlaIII	CATG	4 cut(s)	50, 567, 713, 948
NlaIV	GGNNCC	3 cut(s)	383, 518, 747
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	5 cut(s)	91, 106, 356, 607, 724
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	866
OliI	CACNNNNGTG	1 cut(s)	672
PciI	ACATGT	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 249, 660
PfeI	GAWTC	3 cut(s)	41, 319, 897
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	200, 289, 555, 580, 829, 913
PleI	GAGTC	3 cut(s)	353, 377, 731
PpsI	GAGTC	3 cut(s)	353, 377, 731
PscI	ACATGT	1 cut(s)	563
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	339, 512
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	2 cut(s)	339, 512
PspN4I	GGNNCC	3 cut(s)	383, 518, 747
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	814
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	4 cut(s)	59, 129, 257, 591
RsaNI	GTAC	4 cut(s)	58, 128, 256, 590
RseI	CAYNNNNRTG	2 cut(s)	602, 672
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	99, 429, 891, 906
SatI	GCNGC	6 cut(s)	199, 288, 554, 579, 828, 912
Sau3AI	GATC	7 cut(s)	15, 268, 535, 643, 814, 856, 883
SchI	GAGTC	3 cut(s)	354, 378, 732
ScrFI	CCNGG	4 cut(s)	341, 488, 514, 738
SduI	GDGCHC	2 cut(s)	669, 924
SfcI	CTRYAG	2 cut(s)	260, 828
SfuI	TTCGAA	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	602, 672
Sse9I	AATT	3 cut(s)	74, 432, 633
SsiI	CCGC	7 cut(s)	113, 145, 199, 288, 373, 407, 491
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	339, 486, 512, 736
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	303, 498, 904
TaiI	ACGT	2 cut(s)	189, 246
TaqI	TCGA	3 cut(s)	219, 348, 866
TasI	AATT	3 cut(s)	74, 432, 633
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	201, 290
TfiI	GAWTC	3 cut(s)	41, 319, 897
Tru1I	TTAA	4 cut(s)	99, 429, 891, 906
Tru9I	TTAA	4 cut(s)	99, 429, 891, 906
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	5 cut(s)	91, 106, 356, 607, 724
TseI	GCWGC	4 cut(s)	553, 578, 827, 911
Tsp45I	GTSAC	5 cut(s)	91, 106, 356, 607, 724
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	604
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	548
XceI	RCATGY	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.