Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001298.1

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Reverse (-)

176887 .. 183784

Gene Structure 6898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001298.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ctgttcaaagctcacaatcaagattggtcagaggagaaacaacagagcctcaagatcggcgatgggatcagtcagccgtttgctttctgctacgagacttttgtgccggaggcggtcactctctcttaccaagcgccggaggttttgctggggtctgtcgatttctcgacttcggcggacatttgggccgtcggctgcatcttcgctaagatggtgactgggggtgtactgtttgtcggaatcggtgatgatcctaatcaagctgataagcagcaattgcgagagattttcagacagctaggaaaaccgatgttgaatcagtgtccaggactcacttcgttgccggcttgggagacctaccaagaatgggaaggggaaaagatgaaagatcggttctatttggcaggagatttgccatcggatctgctggtagctacagtttatttggaacaagatggagttgaacttctatcggccaattttgatgcacctgaaggggacgagcctttggctttggacatggggagcatggggaagggtgaagtacagataacattggaagatactggactgttcatgctaatggtaactgcagcgcatgcggttattttgattgaagaaatcagaaagccagagagaacctccatcgcctctgcaatagtcgccgctccgtcaccgacctccagctatcctaagacgacgtacgatctctacgcctccatctccagtctaatgcccatattcaaagctcacaatctcctcagctacgtcgactactccatcacgccactgaagaaattcctctcgaatgacgccggagaaccaacgaccacgatcagcctgagctacgaggcctggatggctcacaaggccaaatttaagccgcccgagacgtcagaaacttggtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

33.42

Weight (kDa)

4.52

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	896
AccBSI	CCGCTC	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	5 cut(s)	113, 176, 602, 666, 884
AclWI	GGATC	3 cut(s)	74, 245, 429
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	797, 875
AcuI	CTGAAG	2 cut(s)	513, 812
AcyI	GRCGYC	2 cut(s)	813, 893
AfaI	GTAC	3 cut(s)	228, 546, 704
AfiI	CCNNNNNNNGG	2 cut(s)	136, 367
AgsI	TTSAA	5 cut(s)	7, 316, 464, 617, 745
AjnI	CCWGG	2 cut(s)	325, 854
AluBI	AGCT	8 cut(s)	11, 263, 298, 434, 687, 749, 765, 846
AluI	AGCT	8 cut(s)	11, 263, 298, 434, 687, 749, 765, 846
Alw26I	GTCTC	3 cut(s)	89, 347, 884
AlwI	GGATC	3 cut(s)	74, 245, 429
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	4 cut(s)	186, 474, 852, 870
ApeKI	GCWGC	3 cut(s)	195, 271, 593
ApoI	RAATTY	2 cut(s)	797, 875
Asp700I	GAANNNNTTC	1 cut(s)	797
AspLEI	GCGC	2 cut(s)	136, 598
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	4 cut(s)	226, 257, 551, 666
AvaI	CYCGRG	1 cut(s)	887
BbvCI	CCTCAGC	1 cut(s)	761
BbvI	GCAGC	3 cut(s)	182, 283, 605
BccI	CCATC	8 cut(s)	56, 205, 424, 449, 653, 728, 788, 853
BceAI	ACGGC	2 cut(s)	61, 173
BciT130I	CCWGG	2 cut(s)	327, 856
BcoDI	GTCTC	3 cut(s)	89, 347, 884
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	435, 591
BfoI	RGCGCY	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	860
BisI	GCNGC	5 cut(s)	196, 272, 594, 666, 884
BlsI	GCNGC	5 cut(s)	197, 273, 595, 667, 885
Bme1390I	CCNGG	2 cut(s)	327, 856
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	327, 856
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	207, 475
BmuI	ACTGGG	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	2 cut(s)	667, 709
Bpu10I	CCTNAGC	2 cut(s)	761, 842
BpuEI	CTTGAG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	2 cut(s)	813, 893
BsaI	GGTCTC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 367
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	223, 571, 726
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	327, 856
BseGI	GGATG	1 cut(s)	864
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	136, 367
BseMII	CTCAG	2 cut(s)	775, 833
BseNI	ACTGG	3 cut(s)	223, 571, 726
BseRI	GAGGAG	2 cut(s)	47, 749
BseXI	GCAGC	3 cut(s)	182, 283, 605
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	4 cut(s)	188, 476, 854, 872
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	4 cut(s)	107, 137, 344, 816
BsiWI	CGTACG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	136, 367
BsmAI	GTCTC	3 cut(s)	89, 347, 884
BsmBI	CGTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	4 cut(s)	188, 476, 854, 872
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	887
Bsp143I	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
BspACI	CCGC	5 cut(s)	113, 176, 602, 666, 884
BspANI	GGCC	4 cut(s)	188, 476, 854, 872
BspCNI	CTCAG	2 cut(s)	774, 834
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	3 cut(s)	74, 245, 429
BspTNI	GGTCTC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	223, 571, 726
BssAI	RCCGGY	1 cut(s)	343
BssMI	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
BssNI	GRCGYC	2 cut(s)	813, 893
Bst2UI	CCWGG	2 cut(s)	327, 856
Bst4CI	ACNGT	3 cut(s)	231, 439, 573
BstACI	GRCGYC	2 cut(s)	813, 893
BstAPI	GCANNNNNTGC	2 cut(s)	277, 599
BstC8I	GCNNGC	2 cut(s)	345, 600
BstDEI	CTNAG	4 cut(s)	207, 693, 761, 842
BstF5I	GGATG	1 cut(s)	864
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	136, 598
BstKTI	GATC	7 cut(s)	57, 69, 253, 391, 424, 709, 837
BstMAI	GTCTC	3 cut(s)	89, 347, 884
BstMBI	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 599, 662, 860, 869
BstNI	CCWGG	2 cut(s)	327, 856
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	325, 854
BstSFI	CTRYAG	2 cut(s)	435, 591
BstV1I	GCAGC	3 cut(s)	182, 283, 605
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	188, 476, 854, 872
BtgZI	GCGATG	2 cut(s)	75, 631
BtsCI	GGATG	1 cut(s)	864
BtsIMutI	CAGTG	2 cut(s)	326, 788
Cac8I	GCNNGC	2 cut(s)	345, 600
CfoI	GCGC	2 cut(s)	136, 598
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	227, 545, 703
CviAII	CATG	4 cut(s)	520, 529, 577, 599
CviQI	GTAC	3 cut(s)	227, 545, 703
DdeI	CTNAG	4 cut(s)	207, 693, 761, 842
DpnI	GATC	7 cut(s)	56, 68, 252, 390, 423, 708, 836
DpnII	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
EaeI	YGGCCR	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	513, 812
Eco88I	CYCGRG	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	325, 854
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	4 cut(s)	523, 532, 580, 602
FaiI	YATR	6 cut(s)	521, 530, 578, 600, 740, 910
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	519, 528, 576, 598
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	5 cut(s)	196, 272, 594, 666, 884
FokI	GGATG	1 cut(s)	871
Fsp4HI	GCNGC	5 cut(s)	196, 272, 594, 666, 884
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	2 cut(s)	135, 597
GluI	GCNGC	5 cut(s)	196, 272, 594, 666, 884
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	2 cut(s)	667, 709
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	188, 476, 854, 872
HapII	CCGG	4 cut(s)	107, 137, 344, 816
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	2 cut(s)	136, 598
Hin1I	GRCGYC	2 cut(s)	813, 893
Hin1II	CATG	4 cut(s)	523, 532, 580, 602
Hin6I	GCGC	2 cut(s)	134, 596
HinP1I	GCGC	2 cut(s)	134, 596
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	3 cut(s)	240, 316, 330
HpaII	CCGG	4 cut(s)	107, 137, 344, 816
HphI	GGTGA	4 cut(s)	226, 257, 551, 666
Hpy166II	GTNNAC	2 cut(s)	227, 772
Hpy188I	TCNGA	6 cut(s)	31, 239, 293, 421, 626, 898
Hpy188III	TCNNGA	4 cut(s)	20, 52, 166, 805
Hpy8I	GTNNAC	2 cut(s)	227, 772
Hpy99I	CGWCG	3 cut(s)	194, 703, 773
HpyAV	CCTTC	3 cut(s)	365, 488, 529
HpyCH4III	ACNGT	3 cut(s)	231, 439, 573
HpyCH4IV	ACGT	3 cut(s)	701, 768, 893
HpyCH4V	TGCA	4 cut(s)	198, 488, 593, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 599, 662, 860, 869
HpyF3I	CTNAG	4 cut(s)	207, 693, 761, 842
HpySE526I	ACGT	3 cut(s)	701, 768, 893
Hsp92I	GRCGYC	2 cut(s)	813, 893
Hsp92II	CATG	4 cut(s)	523, 532, 580, 602
HspAI	GCGC	2 cut(s)	134, 596
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
LmnI	GCTCC	2 cut(s)	525, 673
Lsp1109I	GCAGC	3 cut(s)	182, 283, 605
LweI	GCATC	2 cut(s)	207, 475
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	3 cut(s)	701, 768, 893
MaeIII	GTNAC	4 cut(s)	115, 214, 586, 672
MalI	GATC	7 cut(s)	56, 68, 252, 390, 423, 708, 836
MbiI	CCGCTC	1 cut(s)	668
MboI	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
MboII	GAAGA	4 cut(s)	193, 572, 629, 805
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	4 cut(s)	275, 478, 797, 875
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	797
MseI	TTAA	1 cut(s)	879
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	4 cut(s)	107, 137, 344, 816
MspR9I	CCNGG	2 cut(s)	327, 856
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	2 cut(s)	327, 856
MwoI	GCNNNNNNNGC	5 cut(s)	277, 599, 662, 860, 869
NaeI	GCCGGC	1 cut(s)	345
NdeII	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
NgoMIV	GCCGGC	1 cut(s)	343
NlaIII	CATG	4 cut(s)	523, 532, 580, 602
NmuCI	GTSAC	3 cut(s)	115, 214, 672
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	854
PdiI	GCCGGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	240, 316
Pfl23II	CGTACG	1 cut(s)	702
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	197, 273, 595, 667, 885
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	325, 854
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	325, 854
PspLI	CGTACG	1 cut(s)	702
PspPI	GGNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	3 cut(s)	228, 546, 704
RsaNI	GTAC	3 cut(s)	227, 545, 703
RseI	CAYNNNNRTG	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	5 cut(s)	196, 272, 594, 666, 884
Sau3AI	GATC	7 cut(s)	54, 66, 250, 388, 421, 706, 834
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	327, 856
SfaNI	GCATC	2 cut(s)	207, 475
SfcI	CTRYAG	2 cut(s)	435, 591
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	4 cut(s)	275, 478, 797, 875
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	5 cut(s)	113, 176, 602, 666, 884
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	2 cut(s)	325, 854
TaaI	ACNGT	3 cut(s)	231, 439, 573
TaiI	ACGT	3 cut(s)	704, 771, 896
TaqI	TCGA	4 cut(s)	159, 167, 771, 806
TasI	AATT	4 cut(s)	275, 478, 797, 875
TatI	WGTACW	2 cut(s)	226, 544
TauI	GCSGC	2 cut(s)	668, 886
TfiI	GAWTC	2 cut(s)	240, 316
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	2 cut(s)	326, 795
TseFI	GTSAC	3 cut(s)	115, 214, 672
TseI	GCWGC	3 cut(s)	195, 271, 593
Tsp45I	GTSAC	3 cut(s)	115, 214, 672
TspDTI	ATGAA	2 cut(s)	398, 565
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	326, 795
XapI	RAATTY	2 cut(s)	797, 875
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	797
XspI	CTAG	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.