Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

53585101 .. 53588349

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGCTGAACTTCTATCGCAATTACCATGTTTGTCGGAATTACATTCCCTTTCTTCAGTGGTCTCCATGGATTTTTCAGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGCGTAATGTGGCTTGCCTTCCAGACTGCGAAATTGCTGTATTCAACATTGCCAAAGTAAATGAAATAAAGGTGGAACTTCAGACATCCCAAAAACAATTTTTTCCCACCAACTCTGAGTTGTGGTCATGGGAAACCTTCAGTGAAGACATTTCTTCATGGACAGGTGATACAACTCTCACAGTCATTGGTTTCGTAGATCAGTTGAACATCACTCTAGGCCCCAATGATTATCTACGGTACAGCACCAGTGTCGACATAAGTCCATCTAAATCATTTCTGCGTGGTGTTAAGCATCCAATTCTCACTGTGTTGTCAGCTGGGACCGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTGGTGTGAATAAATTTTCGCTTCTAAGTGTAGCTGTTGGATTACCGGTCCCTATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

201

Amino Acids

22.67

Weight (kDa)

5.74

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	3 cut(s)	41, 182, 241
AfaI	GTAC	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	163, 325
AluBI	AGCT	4 cut(s)	7, 437, 472, 575
AluI	AGCT	4 cut(s)	7, 437, 472, 575
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	487
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	554
AsiGI	ACCGGT	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	338, 441, 589
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	441, 589
BbsI	GAAGAC	1 cut(s)	270
BccI	CCATC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	441, 589
BmgT120I	GGNCC	3 cut(s)	338, 441, 589
BmiI	GGNNCC	3 cut(s)	340, 442, 591
BmsI	GCATC	1 cut(s)	421
BoxI	GACNNNNGTC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	203, 412
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	225, 489
BseNI	ACTGG	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	1 cut(s)	339
BshTI	ACCGGT	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	3 cut(s)	454, 505, 575
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	3 cut(s)	454, 505, 575
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	316, 479
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	226, 488
BspLI	GGNNCC	3 cut(s)	340, 442, 591
BspPI	GGATC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	316, 479
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	301, 357, 427
BstC8I	GCNNGC	2 cut(s)	133, 540
BstDEI	CTNAG	3 cut(s)	234, 475, 566
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	203, 412
BstKTI	GATC	2 cut(s)	319, 482
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	316, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	3 cut(s)	455, 538, 542
BstPAI	GACNNNNGTC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	203, 412
BtsIMutI	CAGTG	4 cut(s)	65, 265, 373, 423
Cac8I	GCNNGC	2 cut(s)	133, 540
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	3 cut(s)	338, 441, 589
Csp6I	GTAC	1 cut(s)	358
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	7 cut(s)	29, 69, 246, 276, 452, 535, 539
CviJI	RGCY	6 cut(s)	7, 131, 339, 437, 472, 575
CviKI_1	RGCY	6 cut(s)	7, 131, 339, 437, 472, 575
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	234, 475, 566
DpnI	GATC	2 cut(s)	318, 481
DpnII	GATC	2 cut(s)	316, 479
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	441, 589
Eco57I	CTGAAG	3 cut(s)	41, 182, 241
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	2 cut(s)	453, 540
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	7 cut(s)	32, 72, 249, 279, 455, 538, 542
FaqI	GGGAC	3 cut(s)	454, 505, 575
FatI	CATG	7 cut(s)	28, 68, 245, 275, 451, 534, 538
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	2 cut(s)	190, 399
FspBI	CTAG	1 cut(s)	335
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	587
Hin1II	CATG	7 cut(s)	32, 72, 249, 279, 455, 538, 542
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	2 cut(s)	493, 510
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	373, 532
Hpy188I	TCNGA	4 cut(s)	39, 81, 201, 235
Hpy188III	TCNNGA	2 cut(s)	140, 477
Hpy8I	GTNNAC	2 cut(s)	373, 532
HpyAV	CCTTC	2 cut(s)	146, 265
HpyCH4III	ACNGT	3 cut(s)	301, 357, 427
HpyCH4V	TGCA	3 cut(s)	451, 499, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	234, 475, 566
Hsp92II	CATG	7 cut(s)	32, 72, 249, 279, 455, 538, 542
Kzo9I	GATC	2 cut(s)	316, 479
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	153, 267, 379, 423, 462, 482, 507, 518, 528
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	335
MalI	GATC	2 cut(s)	318, 481
MboI	GATC	2 cut(s)	316, 479
MboII	GAAGA	3 cut(s)	47, 264, 275
MluCI	AATT	7 cut(s)	22, 40, 150, 215, 417, 554, 597
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	17, 559
MnlI	CCTC	1 cut(s)	75
Mph1103I	ATGCAT	2 cut(s)	453, 540
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	316, 479
NlaIII	CATG	7 cut(s)	32, 72, 249, 279, 455, 538, 542
NlaIV	GGNNCC	3 cut(s)	340, 442, 591
NsiI	ATGCAT	2 cut(s)	453, 540
NspI	RCATGY	3 cut(s)	455, 538, 542
PaeI	GCATGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	586
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PshAI	GACNNNNGTC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	340, 442, 591
PspPI	GGNCC	3 cut(s)	338, 441, 589
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	316, 479
Sau96I	GGNCC	3 cut(s)	338, 441, 589
SchI	GAGTC	1 cut(s)	487
SetI	ASST	7 cut(s)	9, 192, 257, 286, 439, 474, 577
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	2 cut(s)	441, 589
SmiMI	CAYNNNNRTG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	7 cut(s)	22, 40, 150, 215, 417, 554, 597
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	301, 357, 427
TaqI	TCGA	1 cut(s)	372
TasI	AATT	7 cut(s)	22, 40, 150, 215, 417, 554, 597
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	4 cut(s)	65, 265, 373, 430
TspDTI	ATGAA	2 cut(s)	195, 264
TspRI	CASTG	4 cut(s)	65, 265, 373, 430
VpaK11BI	GGWCC	2 cut(s)	441, 589
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	3 cut(s)	455, 538, 542
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	2 cut(s)	453, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.