Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

2422579 .. 2423279

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCTAGCTGACTTTAAAGATCTTTTAGATAAAATGTTTGTATTGGATCCGGATAAGAGGTTGACAGTATCACAAGCTTTGAACCATCCTTTCATCACTGTTTTGGCATGGTTGAAGTCAGAAGGGGTGATGTTTTGGTCAGGAGTACTCATCACTGGCGGGGGTTCTTTCACTTGTACTGTTTCTATCGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

66

Amino Acids

7.21

Weight (kDa)

4.88

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	41, 54
AfaI	GTAC	2 cut(s)	147, 178
AgsI	TTSAA	2 cut(s)	82, 115
AluBI	AGCT	2 cut(s)	8, 77
AluI	AGCT	2 cut(s)	8, 77
AlwI	GGATC	2 cut(s)	41, 54
Aor13HI	TCCGGA	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	139
AsuNHI	GCTAGC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	5
BglII	AGATCT	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	48
BmtI	GCTAGC	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	19, 46
BspACI	CCGC	1 cut(s)	159
BspDI	ATCGAT	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	41, 54
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	19, 46
Bst4CI	ACNGT	3 cut(s)	67, 100, 181
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	22, 49
BstMBI	GATC	2 cut(s)	19, 46
BstX2I	RGATCY	2 cut(s)	19, 46
BstYI	RGATCY	2 cut(s)	19, 46
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	96, 153
Cac8I	GCNNGC	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	146, 177
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	2 cut(s)	8, 77
CviKI_1	RGCY	2 cut(s)	8, 77
CviQI	GTAC	2 cut(s)	146, 177
DpnI	GATC	2 cut(s)	21, 48
DpnII	GATC	2 cut(s)	19, 46
DraI	TTTAAA	1 cut(s)	16
FaeI	CATG	1 cut(s)	111
FaiI	YATR	2 cut(s)	109, 194
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	5
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	75
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	50, 141
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	67, 100, 181
Hsp92II	CATG	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	19, 46
LpnPI	CCDG	3 cut(s)	63, 126, 141
MaeI	CTAG	1 cut(s)	5
MalI	GATC	2 cut(s)	21, 48
MboI	GATC	2 cut(s)	19, 46
MflI	RGATCY	2 cut(s)	19, 46
MnlI	CCTC	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	1 cut(s)	15
MspI	CCGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	19, 46
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	19, 46
RsaI	GTAC	2 cut(s)	147, 178
RsaNI	GTAC	2 cut(s)	146, 177
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	19, 46
ScaI	AGTACT	1 cut(s)	147
SetI	ASST	3 cut(s)	10, 62, 79
SgeI	CNNG	8 cut(s)	17, 62, 86, 120, 153, 168, 172, 186
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	3 cut(s)	67, 100, 181
TaqI	TCGA	1 cut(s)	189
TatI	WGTACW	2 cut(s)	145, 176
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	103, 160
TspDTI	ATGAA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	103, 160
XspI	CTAG	1 cut(s)	5
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.