Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

8054584 .. 8058170

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGCCCCCGCCCCAAAATACAAGATTACGAGATCAGTCCCGAGATTTTGAGGGTGGAATCCCATGGCCAAGTGTACAAAGCCACGCACAAATTGACCGGCGAGTTAGTCACGATTAAAAAGGTGACGGCGGACGACGGCGTACCTCCCACTCTCGTCCGCGAGATGTCTGTCTTGGGGAAGTTTACGAAATCGGTTTACGTCGTCAACTGCCGCGAAGTCATCCACGAGGTCGAGGACTACAAGCCCGTTTACTACGTTATTTACGAGTACCTAGTAACCGATCTCCACAGCTACATTGCCGCCAAACCCTTACCGTCCGATGTGGTCAAGAATCTTCTCTTCAAGCTCCTCCAGGGCGTCGACGAGTGTCACTCTAAAGGAGTCCGCCACCGGAACCTAAACCCTAGTAATCTGCTGGTGGACGAGGAACGAGGATGTCTTAAAATTGGGGCCGGCATTGGTCAGTCCTTCGCTTTTTTTGGTGAGGCTTCTTCCATCCCCGGCGGGACGGTCAGTCTCTTTTACCAGGCTCCGGAGGCTTTGCTCCGATCAACCAAGTGCGGGGCTGCTGTTGACATGTGGGCTGTCGGCTGCATATTCGCTGAGATGGTGACTGGGGATGTTCTGTTTGTCGGAATTGGTGATGATCCTAAACATGCTGATAAGGAGCACTTGCATGAGATTTTCAGGCAATTAGGAAAACCAACAGAGCATGAGTGGCGAGGAGTCACTTCTTTGCCGGGTTGGGAACCCTACGAAGAATGGGAAGGAGAAAAGAAGAAAGCTCGGTGTTATTTGGCAGGAGATTTGCCAAAAGATCTGCTGGTAGCTGCAGTTTCTTTGGAACAAGATGGAGCTGATCTTCTTTCGAAAATGCTTATATATGATCCAGTGAAAAGAATCACAGCTAAAGCAGCAATGGAGCATCCCTACTTTGAGCCAGTGGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

318

Amino Acids

35.49

Weight (kDa)

5.6

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 313	1.6e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 208	2e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	2 cut(s)	162, 216
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	8 cut(s)	10, 131, 160, 214, 303, 388, 507, 564
AclWI	GGATC	2 cut(s)	644, 884
AcoI	YGGCCR	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	77, 144, 272
AfiI	CCNNNNNNNGG	2 cut(s)	535, 564
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	1 cut(s)	346
AhdI	GACNNNNNGTC	1 cut(s)	516
AjnI	CCWGG	2 cut(s)	354, 528
AluBI	AGCT	6 cut(s)	294, 349, 788, 833, 860, 911
AluI	AGCT	6 cut(s)	294, 349, 788, 833, 860, 911
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	2 cut(s)	644, 884
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	2 cut(s)	67, 453
ApeKI	GCWGC	4 cut(s)	569, 594, 833, 917
AspS9I	GGNCC	1 cut(s)	453
AsuC2I	CCSGG	2 cut(s)	504, 744
AsuHPI	GGTGA	4 cut(s)	136, 497, 625, 656
AsuII	TTCGAA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	556, 581, 820, 929
BccI	CCATC	3 cut(s)	506, 604, 848
BceAI	ACGGC	2 cut(s)	144, 154
BciT130I	CCWGG	2 cut(s)	356, 530
BcnI	CCSGG	2 cut(s)	504, 744
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	275, 408
BfmI	CTRYAG	1 cut(s)	834
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	6 cut(s)	214, 303, 570, 595, 834, 918
BlsI	GCNGC	6 cut(s)	215, 304, 571, 596, 835, 919
Bme1390I	CCNGG	4 cut(s)	356, 504, 530, 744
BmeRI	GACNNNNNGTC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	4 cut(s)	398, 454, 534, 753
BmrFI	CCNGG	4 cut(s)	356, 504, 530, 744
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	627
BoxI	GACNNNNGTC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	872
BpuMI	CCSGG	2 cut(s)	504, 744
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	64, 355, 502
BsaWI	WCCGGW	2 cut(s)	393, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 564
Bse118I	RCCGGY	2 cut(s)	98, 455
Bse1I	ACTGG	3 cut(s)	622, 893, 944
Bse3DI	GCAATG	2 cut(s)	297, 927
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	356, 530
BseDI	CCNNGG	3 cut(s)	64, 355, 502
BseGI	GGATG	5 cut(s)	222, 443, 498, 628, 928
BseLI	CCNNNNNNNGG	2 cut(s)	535, 564
BseMI	GCAATG	2 cut(s)	297, 927
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	3 cut(s)	622, 893, 944
BseRI	GAGGAG	2 cut(s)	341, 741
BseXI	GCAGC	4 cut(s)	556, 581, 820, 929
Bsh1236I	CGCG	2 cut(s)	162, 216
BshFI	GGCC	2 cut(s)	69, 455
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	6 cut(s)	99, 394, 456, 504, 536, 743
BslFI	GGGAC	2 cut(s)	24, 523
BslI	CCNNNNNNNGG	2 cut(s)	535, 564
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	24, 523
BsnI	GGCC	2 cut(s)	69, 455
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	872
Bsp1286I	GDGCHC	2 cut(s)	8, 675
Bsp13I	TCCGGA	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	8 cut(s)	10, 131, 160, 214, 303, 388, 507, 564
BspANI	GGCC	2 cut(s)	69, 455
BspCNI	CTCAG	1 cut(s)	598
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	162, 216
BspLI	GGNNCC	4 cut(s)	398, 454, 534, 753
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	2 cut(s)	644, 884
BspT104I	TTCGAA	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	297, 927
BsrFI	RCCGGY	2 cut(s)	98, 455
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	622, 893, 944
BssAI	RCCGGY	2 cut(s)	98, 455
BssECI	CCNNGG	3 cut(s)	64, 355, 502
BssMI	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	356, 530
Bst4CI	ACNGT	2 cut(s)	318, 514
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	5 cut(s)	222, 443, 498, 628, 928
BstFNI	CGCG	2 cut(s)	162, 216
BstKTI	GATC	7 cut(s)	36, 286, 554, 652, 823, 865, 892
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	539, 721, 917
BstNI	CCWGG	2 cut(s)	356, 530
BstNSI	RCATGY	2 cut(s)	583, 662
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	4 cut(s)	354, 502, 528, 742
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	2 cut(s)	162, 216
BstV1I	GCAGC	4 cut(s)	556, 581, 820, 929
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	2 cut(s)	69, 455
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	5 cut(s)	222, 443, 498, 628, 928
BtsIMutI	CAGTG	2 cut(s)	900, 951
Cac8I	GCNNGC	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	98, 455
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	76, 143, 271
CviAII	CATG	5 cut(s)	65, 580, 659, 680, 716
CviQI	GTAC	3 cut(s)	76, 143, 271
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	7 cut(s)	35, 285, 553, 651, 822, 864, 891
DpnII	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
DriI	GACNNNNNGTC	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	347
Eam1105I	GACNNNNNGTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	2 cut(s)	146, 377
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	354, 528
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	5 cut(s)	68, 583, 662, 683, 719
FaiI	YATR	9 cut(s)	66, 581, 599, 660, 681, 717, 884, 886, 888
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	2 cut(s)	24, 523
FatI	CATG	5 cut(s)	64, 579, 658, 679, 715
FauI	CCCGC	3 cut(s)	17, 500, 557
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	6 cut(s)	214, 303, 570, 595, 834, 918
FokI	GGATG	5 cut(s)	209, 450, 485, 635, 915
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	214, 303, 570, 595, 834, 918
FspBI	CTAG	2 cut(s)	275, 408
GluI	GCNGC	6 cut(s)	214, 303, 570, 595, 834, 918
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	69, 455
HapII	CCGG	6 cut(s)	99, 394, 456, 504, 536, 743
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	5 cut(s)	68, 583, 662, 683, 719
HincII	GTYRAC	3 cut(s)	208, 364, 577
HindII	GTYRAC	3 cut(s)	208, 364, 577
HinfI	GANTC	5 cut(s)	59, 334, 384, 729, 903
HpaII	CCGG	6 cut(s)	99, 394, 456, 504, 536, 743
HphI	GGTGA	4 cut(s)	136, 497, 625, 656
Hpy166II	GTNNAC	9 cut(s)	76, 186, 199, 208, 253, 364, 424, 577, 949
Hpy188I	TCNGA	3 cut(s)	322, 551, 638
Hpy188III	TCNNGA	4 cut(s)	41, 112, 331, 536
Hpy8I	GTNNAC	9 cut(s)	76, 186, 199, 208, 253, 364, 424, 577, 949
Hpy99I	CGWCG	4 cut(s)	140, 206, 365, 368
HpyAV	CCTTC	2 cut(s)	481, 764
HpyCH4III	ACNGT	2 cut(s)	318, 514
HpyCH4IV	ACGT	2 cut(s)	201, 258
HpyCH4V	TGCA	3 cut(s)	597, 679, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	539, 721, 917
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	2 cut(s)	201, 258
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	68, 583, 662, 683, 719
Kpn2I	TCCGGA	1 cut(s)	535
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Kzo9I	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
LmnI	GCTCC	6 cut(s)	354, 538, 552, 670, 857, 925
Lsp1109I	GCAGC	4 cut(s)	556, 581, 820, 929
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	2 cut(s)	275, 408
MaeII	ACGT	2 cut(s)	201, 258
MaeIII	GTNAC	6 cut(s)	109, 124, 277, 371, 613, 730
MalI	GATC	7 cut(s)	35, 285, 553, 651, 822, 864, 891
MboI	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
MboII	GAAGA	6 cut(s)	329, 334, 486, 773, 793, 857
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	2 cut(s)	8, 675
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	4 cut(s)	92, 447, 639, 695
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	393, 738
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	117, 444
MslI	CAYNNNNRTG	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	69
MspI	CCGG	6 cut(s)	99, 394, 456, 504, 536, 743
MspR9I	CCNGG	4 cut(s)	356, 504, 530, 744
MvaI	CCWGG	2 cut(s)	356, 530
MvnI	CGCG	2 cut(s)	162, 216
MwoI	GCNNNNNNNGC	3 cut(s)	539, 721, 917
NaeI	GCCGGC	1 cut(s)	457
NciI	CCSGG	2 cut(s)	504, 744
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	5 cut(s)	68, 583, 662, 683, 719
NlaIV	GGNNCC	4 cut(s)	398, 454, 534, 753
NmuCI	GTSAC	5 cut(s)	109, 124, 371, 613, 730
NspI	RCATGY	2 cut(s)	583, 662
NspV	TTCGAA	1 cut(s)	872
PciI	ACATGT	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	59, 334, 903
PkrI	GCNGC	6 cut(s)	215, 304, 571, 596, 835, 919
PleI	GAGTC	2 cut(s)	392, 737
PpsI	GAGTC	2 cut(s)	392, 737
PscI	ACATGT	1 cut(s)	579
PshAI	GACNNNNGTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	354, 528
PspGI	CCWGG	2 cut(s)	354, 528
PspN4I	GGNNCC	4 cut(s)	398, 454, 534, 753
PspPI	GGNCC	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	3 cut(s)	77, 144, 272
RsaNI	GTAC	3 cut(s)	76, 143, 271
RseI	CAYNNNNRTG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	117, 444
SatI	GCNGC	6 cut(s)	214, 303, 570, 595, 834, 918
Sau3AI	GATC	7 cut(s)	33, 283, 551, 649, 820, 862, 889
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	2 cut(s)	393, 738
ScrFI	CCNGG	4 cut(s)	356, 504, 530, 744
SduI	GDGCHC	2 cut(s)	8, 675
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	872
SgrDI	CGTCGACG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	4 cut(s)	92, 447, 639, 695
SsiI	CCGC	8 cut(s)	10, 131, 160, 214, 303, 388, 507, 564
SspMI	CTAG	2 cut(s)	275, 408
StyD4I	CCNGG	4 cut(s)	354, 502, 528, 742
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	318, 514
TaiI	ACGT	2 cut(s)	204, 261
TaqI	TCGA	3 cut(s)	234, 363, 872
TasI	AATT	4 cut(s)	92, 447, 639, 695
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	2 cut(s)	216, 305
TfiI	GAWTC	3 cut(s)	59, 334, 903
Tru1I	TTAA	2 cut(s)	117, 444
Tru9I	TTAA	2 cut(s)	117, 444
TscAI	CASTG	2 cut(s)	900, 951
TseFI	GTSAC	5 cut(s)	109, 124, 371, 613, 730
TseI	GCWGC	4 cut(s)	569, 594, 833, 917
Tsp45I	GTSAC	5 cut(s)	109, 124, 371, 613, 730
TspRI	CASTG	2 cut(s)	900, 951
XceI	RCATGY	2 cut(s)	583, 662
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	275, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.