Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003461

Physical Location & Seq

Genomic Coordinates Forward (+)

42079050 .. 42082470

Gene Structure 3421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACAATTACGACATGTCGCCGGAGATTCTGAGAGAAGAACCACACGGCCGCTTGTACAAAGCCACGTTCAAACCCACCGGCGAGACCGTCGTCATCAAGAAGATCCCGTCCGACGCTAACTTCCCGAACGGCCTACCTCCCGCCCTCTCCCGCGAGATTCTAATCTACCAGAAGCTTCCTCAGTCCGCTTACGTCATCGATCGCCGCCACGTGTTCCGCCAGTTCGAGGACGGCGGCCCCGTCTTCTACATTGTCTACGAGCACCTCGACACCGATCTCGCCGCCTTCATCGCCGCCTCCTCCGTCAGTCCCTTGCCGTCCAATTTGGTCAAGAAGCTTCTCTTCCAGCTCCTCAAGGGCGTCGACCACTGTCACCGTAACGGCATCATCCACCGGAACCTGAACCCCAAGAATCTGCTGCTTGACGAGAAACAACAGAGCCTCAAGATCGGCGATGGGATCAGTCAGTCTTTTGCTTTCTGCTACGAGACTTTTTTGCCGGAGACGGTCACTCTCTCTTACCAGGCGCCGGAGGTTTTGCTGGGGTCCACCGATTTCTCGACTCCGGCGGACATTTGGGCCGTCGGCTGCATCTTCGCTGAGATGGTGACTGGGGATGTACTGTTTGTCGGAATCGGTGATGATCCTAATCAAGCTGATAAGCAGCAATTGCGTGAGATTTTCAGACAGCTAGGAAAACCGATGTTGAATCAGTGTCCAGGACTCACTTCTTTGCCGGCTTGGGAGACCTACCAAGAATGGGAAGGGGAAAAGATGAAAGCTCGGTTCTATTCGGCAGGAGATTTGCCATCGGATCTGCTGGTAGCTACAGTTTCTTTGGAACAAGATGGAGCTGACCTTCTATCGGTAAGTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

32.84

Weight (kDa)

4.96

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 207	6.6e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 231	3.9e-35	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16100 FvH4_2g16100 FvH4_2g16100 FvH4_3g37810
pyrus_communis	pycom16g03910
rosa_chinensis	RchiOBHm_Chr5g0011221 RchiOBHm_Chr6g0279771
rosa_laevigata	RLG00000001558 RLG00000013122 RLG00000030029 RLG00000031819
rosa_multiflora	Rmu_co8468977.1_g000001 Rmu_sc0000898.1_g000056 Rmu_sc0001298.1_g000055 Rmu_sc0002990.1_g000006 Rmu_sc0003242.1_g000033
rosa_roxburghii	Rroxscaffold_1G00065180 Rroxscaffold_7G00188680
rosa_rugosa	Rorug01G0480900 Rorug02G0507500 Rorug04G0455700 Rorug04G0455800 Rorug06G0127900 Rorug07G0130900
rosa_samantha	Rh2CG560400 Rh2DG469000 Rh4AG014400 Rh5AG087800 Rh5CG095600 Rh5DG082500 Rh6AG236100 Rh6BG240300 Rh6CG242500 Rh6DG234000
rosa_wichuraiana	Rw5G007600 Rw6G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	2 cut(s)	258, 366
AccII	CGCG	1 cut(s)	156
AclWI	GGATC	4 cut(s)	100, 470, 641, 825
AcoI	YGGCCR	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	214
AcyI	GRCGYC	2 cut(s)	363, 530
AfaI	GTAC	2 cut(s)	59, 624
AfiI	CCNNNNNNNGG	4 cut(s)	229, 532, 763, 868
AflIII	ACRYGT	2 cut(s)	15, 213
AgsI	TTSAA	2 cut(s)	73, 712
AjnI	CCWGG	2 cut(s)	525, 721
AluBI	AGCT	8 cut(s)	178, 340, 352, 659, 694, 785, 830, 857
AluI	AGCT	8 cut(s)	178, 340, 352, 659, 694, 785, 830, 857
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	4 cut(s)	80, 485, 500, 743
AlwI	GGATC	4 cut(s)	100, 470, 641, 825
AoxI	GGCC	4 cut(s)	49, 133, 238, 582
ApeKI	GCWGC	3 cut(s)	421, 591, 667
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	239, 549, 582
AsuHPI	GGTGA	3 cut(s)	368, 622, 653
AvaII	GGWCC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	529
BbrPI	CACGTG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	408, 578, 679
BccI	CCATC	4 cut(s)	452, 601, 820, 845
BceAI	ACGGC	6 cut(s)	64, 148, 250, 304, 400, 569
BciT130I	CCWGG	2 cut(s)	527, 723
BcoDI	GTCTC	4 cut(s)	80, 485, 500, 743
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	1 cut(s)	533
BisI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 422, 592, 668
BlsI	GCNGC	8 cut(s)	53, 209, 239, 286, 298, 423, 593, 669
Bme1390I	CCNGG	2 cut(s)	527, 723
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	239, 549, 582
BmiI	GGNNCC	4 cut(s)	241, 401, 531, 550
BmrFI	CCNGG	2 cut(s)	527, 723
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	396, 603
BmuI	ACTGGG	1 cut(s)	624
BoxI	GACNNNNGTC	2 cut(s)	92, 372
BpiI	GAAGAC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	341, 431
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	2 cut(s)	164, 651
BsaHI	GRCGYC	2 cut(s)	363, 530
BsaI	GGTCTC	2 cut(s)	80, 743
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 532, 763, 868
Bse118I	RCCGGY	2 cut(s)	80, 739
Bse1I	ACTGG	2 cut(s)	223, 619
Bse8I	GATNNNNATC	2 cut(s)	164, 651
BseBI	CCWGG	2 cut(s)	527, 723
BseCI	ATCGAT	1 cut(s)	201
BseGI	GGATG	2 cut(s)	390, 625
BseJI	GATNNNNATC	2 cut(s)	164, 651
BseLI	CCNNNNNNNGG	4 cut(s)	229, 532, 763, 868
BseMII	CTCAG	3 cut(s)	23, 197, 594
BseNI	ACTGG	2 cut(s)	223, 619
BseRI	GAGGAG	2 cut(s)	292, 344
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	408, 578, 679
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	2 cut(s)	52, 205
BshFI	GGCC	4 cut(s)	51, 135, 240, 584
BshNI	GGYRCC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	52, 205
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	7 cut(s)	23, 81, 397, 503, 533, 569, 740
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	229, 532, 763, 868
BsmAI	GTCTC	4 cut(s)	80, 485, 500, 743
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	51, 135, 240, 584
Bso31I	GGTCTC	2 cut(s)	80, 743
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
BspANI	GGCC	4 cut(s)	51, 135, 240, 584
BspCNI	CTCAG	3 cut(s)	24, 196, 595
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	241, 401, 531, 550
BspPI	GGATC	4 cut(s)	100, 470, 641, 825
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	2 cut(s)	80, 743
BsrFI	RCCGGY	2 cut(s)	80, 739
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	223, 619
BssAI	RCCGGY	2 cut(s)	80, 739
BssMI	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
BssNI	GRCGYC	2 cut(s)	363, 530
Bst2UI	CCWGG	2 cut(s)	527, 723
Bst4CI	ACNGT	6 cut(s)	91, 374, 380, 511, 627, 835
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	2 cut(s)	363, 530
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	3 cut(s)	32, 183, 603
BstF5I	GGATG	2 cut(s)	390, 625
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	7 cut(s)	108, 205, 280, 453, 465, 649, 820
BstMAI	GTCTC	4 cut(s)	80, 485, 500, 743
BstMBI	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
BstMCI	CGRYCG	2 cut(s)	52, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 673
BstNI	CCWGG	2 cut(s)	527, 723
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	2 cut(s)	92, 372
BstSCI	CCNGG	2 cut(s)	525, 721
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	408, 578, 679
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	105, 817
BstYI	RGATCY	2 cut(s)	105, 817
BstZI	CGGCCG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	51, 135, 240, 584
BsuTUI	ATCGAT	1 cut(s)	201
BtgZI	GCGATG	2 cut(s)	277, 471
BtsCI	GGATG	2 cut(s)	390, 625
BtsIMutI	CAGTG	2 cut(s)	370, 722
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	2 cut(s)	80, 739
Cfr13I	GGNCC	3 cut(s)	239, 549, 582
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	125, 352
Csp6I	GTAC	2 cut(s)	58, 623
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	2 cut(s)	58, 623
DdeI	CTNAG	3 cut(s)	32, 183, 603
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	7 cut(s)	107, 204, 279, 452, 464, 648, 819
DpnII	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EciI	GGCGGA	2 cut(s)	209, 587
EclXI	CGGCCG	1 cut(s)	49
Eco31I	GGTCTC	2 cut(s)	80, 743
Eco47I	GGWCC	1 cut(s)	549
Eco52I	CGGCCG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	525, 721
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	1 cut(s)	15
FauI	CCCGC	2 cut(s)	151, 161
FblI	GTMKAC	2 cut(s)	258, 366
Fnu4HI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 422, 592, 668
FokI	GGATG	2 cut(s)	377, 632
Fsp4HI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 422, 592, 668
FspBI	CTAG	1 cut(s)	695
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 422, 592, 668
GsaI	CCCAGC	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	51, 135, 240, 584
HapII	CCGG	7 cut(s)	23, 81, 397, 503, 533, 569, 740
HgaI	GACGC	2 cut(s)	125, 352
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	2 cut(s)	363, 530
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	176, 338
HinfI	GANTC	7 cut(s)	28, 160, 415, 565, 636, 712, 726
HpaII	CCGG	7 cut(s)	23, 81, 397, 503, 533, 569, 740
HphI	GGTGA	3 cut(s)	368, 622, 653
Hpy166II	GTNNAC	3 cut(s)	259, 367, 552
Hpy188I	TCNGA	5 cut(s)	33, 115, 635, 689, 817
Hpy188III	TCNNGA	5 cut(s)	100, 127, 334, 448, 562
Hpy8I	GTNNAC	3 cut(s)	259, 367, 552
Hpy99I	CGWCG	4 cut(s)	95, 119, 368, 590
HpyAV	CCTTC	3 cut(s)	298, 761, 872
HpyCH4III	ACNGT	6 cut(s)	91, 374, 380, 511, 627, 835
HpyCH4IV	ACGT	3 cut(s)	68, 195, 213
HpyCH4V	TGCA	1 cut(s)	594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 673
HpyF3I	CTNAG	3 cut(s)	32, 183, 603
HpySE526I	ACGT	3 cut(s)	68, 195, 213
Hsp92I	GRCGYC	2 cut(s)	363, 530
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	530
KasI	GGCGCC	1 cut(s)	529
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Kzo9I	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
LmnI	GCTCC	2 cut(s)	357, 854
Lsp1109I	GCAGC	3 cut(s)	408, 578, 679
LweI	GCATC	2 cut(s)	396, 603
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	3 cut(s)	68, 195, 213
MaeIII	GTNAC	4 cut(s)	374, 380, 511, 610
MalI	GATC	7 cut(s)	107, 204, 279, 452, 464, 648, 819
MboI	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
MboII	GAAGA	5 cut(s)	50, 115, 238, 337, 589
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	2 cut(s)	105, 817
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	7, 325, 671
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	559, 720
MmeI	TCCRAC	2 cut(s)	138, 613
MroNI	GCCGGC	1 cut(s)	739
MseI	TTAA	1 cut(s)	883
MspI	CCGG	7 cut(s)	23, 81, 397, 503, 533, 569, 740
MspR9I	CCNGG	2 cut(s)	527, 723
MunI	CAATTG	1 cut(s)	671
MvaI	CCWGG	2 cut(s)	527, 723
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	293, 673
NaeI	GCCGGC	1 cut(s)	741
NarI	GGCGCC	1 cut(s)	530
NdeII	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	4 cut(s)	241, 401, 531, 550
NmuCI	GTSAC	3 cut(s)	374, 511, 610
NspI	RCATGY	1 cut(s)	19
PciI	ACATGT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 267
PdiI	GCCGGC	1 cut(s)	741
PfeI	GAWTC	5 cut(s)	28, 160, 415, 636, 712
PfoI	TCCNGGA	1 cut(s)	721
PkrI	GCNGC	8 cut(s)	53, 209, 239, 286, 298, 423, 593, 669
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	559, 720
PluTI	GGCGCC	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	2 cut(s)	559, 720
Ppu21I	YACGTR	1 cut(s)	214
PscI	ACATGT	1 cut(s)	15
PshAI	GACNNNNGTC	2 cut(s)	92, 372
Psp6I	CCWGG	2 cut(s)	525, 721
PspCI	CACGTG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	525, 721
PspN4I	GGNNCC	4 cut(s)	241, 401, 531, 550
PspPI	GGNCC	3 cut(s)	239, 549, 582
PsuI	RGATCY	2 cut(s)	105, 817
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	59, 624
RsaNI	GTAC	2 cut(s)	58, 623
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	8 cut(s)	52, 208, 238, 285, 297, 422, 592, 668
Sau3AI	GATC	7 cut(s)	105, 202, 277, 450, 462, 646, 817
Sau96I	GGNCC	3 cut(s)	239, 549, 582
SchI	GAGTC	2 cut(s)	559, 720
ScrFI	CCNGG	2 cut(s)	527, 723
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	396, 603
SfcI	CTRYAG	1 cut(s)	831
SfoI	GGCGCC	1 cut(s)	531
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	356, 446
SmoI	CTYRAG	2 cut(s)	356, 446
Sse9I	AATT	3 cut(s)	7, 325, 671
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	525, 721
TaaI	ACNGT	6 cut(s)	91, 374, 380, 511, 627, 835
TaiI	ACGT	3 cut(s)	71, 198, 216
TaqI	TCGA	5 cut(s)	201, 228, 270, 366, 563
TasI	AATT	3 cut(s)	7, 325, 671
TatI	WGTACW	2 cut(s)	57, 622
TauI	GCSGC	5 cut(s)	54, 210, 240, 287, 299
TfiI	GAWTC	5 cut(s)	28, 160, 415, 636, 712
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	2 cut(s)	377, 722
TseFI	GTSAC	3 cut(s)	374, 511, 610
TseI	GCWGC	3 cut(s)	421, 591, 667
Tsp45I	GTSAC	3 cut(s)	374, 511, 610
TspDTI	ATGAA	2 cut(s)	280, 794
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	377, 722
VpaK11BI	GGWCC	1 cut(s)	549
XceI	RCATGY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	258, 366
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.